BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0094.p (636 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] 688 0.0 ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii N... 529 e-148 emb|CCC55885.1| putative NopM [Sinorhizobium fredii] 505 e-141 ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium ja... 505 e-140 gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] 505 e-140 >emb|CAQ57580.1| NopM protein [Bradyrhizobium elkanii] Length = 610 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/641 (59%), Positives = 461/641 (71%), Gaps = 36/641 (5%) Query: 1 MNTERAQPRAGIPF---ESESTEPTSRAAGQSPSCLTQWASALTRWATGAAAADLVSSQD 57 MNTE Q +G P +SE++EP S AA TQW ALT A+A + SSQ Sbjct: 1 MNTE--QLGSGTPSGTSDSETSEPASPAA-------TQWGEALTD--ALASAGEASSSQL 49 Query: 58 RVLATWAAEEGQGEDENRQEGVNRTRAWRDEGDVGDELNLSSLSLTALPASLLPRLRTLN 117 VL+TWAAE GQG+ E+R+E V+RTRAW+D GDV + L+LSSLSLT LPAS L LR LN Sbjct: 50 EVLSTWAAEGGQGQHEDRREAVSRTRAWQDRGDVNEALDLSSLSLTGLPASTLAGLRRLN 109 Query: 118 VIGNQLSSLPARLPGGLRDLYASDNRLTSLPALPSRLRHLHLMANELSSLPAELPFRLRS 177 V NQL+SLP LP L+ L AS+NRLT LP LP+ L L +++N L++LPA+LP L Sbjct: 110 VDDNQLNSLPGNLPVSLQWLSASNNRLTGLPELPNGLLQLDVISNGLTNLPAQLPPGLLR 169 Query: 178 LTVDSNQLTDLPALPATIEELSASNNQLTSLPD-LPARLRRLDVSENQLTSLPDLPARLR 236 L VD NNQLTSLPD LPA L LD S N+LT+LPDLP+RL+ Sbjct: 170 LRVD--------------------NNQLTSLPDRLPATLEELDASGNRLTNLPDLPSRLQ 209 Query: 237 YLDAGDNQLTSLPG-VPARLRYLDVSENQLTNLPETLPVGLEMLGASNNQLTGLPATVLT 295 L+ NQLT LP +P L++L S N+LT+LPET L LGASNNQLT +P T+LT Sbjct: 210 RLNVDHNQLTDLPEPLPGGLQWLSASHNELTSLPETALPDLIWLGASNNQLTSVPETLLT 269 Query: 296 QLGSASSIDVRSNPIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPLLHEVVADW 355 QL SS+++ +NP+P V A L + YAGPQV LS +E QP L EVVA W Sbjct: 270 QLSGYSSVNLENNPLPDLVQAGLTATIHAAGYAGPQVFLSTAEGALEVQPRSLQEVVAHW 329 Query: 356 LADEPGAVAAWQGFAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQAAMRPRLRE 415 L EP +A WQ FA+EPGAQD+A FL+RL GTVNYG++AFR V E+L QAA+RPRLRE Sbjct: 330 LEAEPSVMATWQRFAQEPGAQDYARFLDRLGGTVNYGNEAFRQAVVEDLRQAAVRPRLRE 389 Query: 416 QYFELASGATASCEDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVMFRLEALDD 475 Q+F+LASGA+ CEDRVTLTWNGMQ+ARLNADV+DG+YD +L +LLQ GRV+FRLEALD Sbjct: 390 QFFQLASGASERCEDRVTLTWNGMQSARLNADVEDGVYDGRLTELLQQGRVLFRLEALDR 449 Query: 476 IARETVRSLRRADPDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDVTADDVARA 535 IARETV SLRRADPDA++DEIEVYLAYQTQLR+ L+L HIAPDMRFLN+S+VT DD+ RA Sbjct: 450 IARETVNSLRRADPDADVDEIEVYLAYQTQLRNPLQLLHIAPDMRFLNVSNVTEDDIVRA 509 Query: 536 ETSVREQEAAGFADFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPTRLNERLAE 595 E SVR QEAA F D+LATRW PW++V++RIAP+DH AM RL DAM DEF RL+ RLAE Sbjct: 510 EASVRNQEAAEFPDYLATRWHPWESVLRRIAPEDHVAMERRLVDAMGDEFQARLDRRLAE 569 Query: 596 PGLTDDVDARRVVGAQILSEIACEIKGELMHKVLREQGLEL 636 GLT D DA RV+GAQI EIA EIKG +MH+VL GLEL Sbjct: 570 NGLTGDADAERVLGAQIRKEIALEIKGPVMHQVLERFGLEL 610 >ref|NP_443862.1| nodulation protein NopM [Sinorhizobium fredii NGR234] sp|P55456.1|Y4FR_RHISN RecName: Full=Probable E3 ubiquitin-protein ligase NGR_a03640 gb|AAB91674.1| nodulation outer protein NopM; probable type III effector [Sinorhizobium fredii NGR234] Length = 546 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 280/448 (62%), Positives = 339/448 (75%), Gaps = 4/448 (0%) Query: 191 LPATIEELSASNNQLTSLPD-LPARLRRLDVSENQLTSLPDLPARLRYLDAGDNQLTSLP 249 L + + L+ +NNQL LPD LP L L+ SEN+LT LPDLPA L+ L+ +N+LT+LP Sbjct: 101 LVSGLRRLNVNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLP 160 Query: 250 G-VPARLRYLDVSENQLTNLPETLPVGLEMLGASNNQLTGLPATVLTQLGSASSIDVRSN 308 +PA L +L NQLT LPE +P L LGA NNQLT +P ++LTQLG SSID+ +N Sbjct: 161 EPLPAALEWLGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPESLLTQLGQWSSIDLENN 220 Query: 309 PIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPLLHEVVADWLADEPGAVAAWQG 368 P+P V +L +A YAGPQ+ L P+ PVE LHEVVADWL + VAAW+G Sbjct: 221 PLPHGVQTNLVTAMHAAGYAGPQIFL--PMGPVELARRPLHEVVADWLEGDLETVAAWRG 278 Query: 369 FAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQAAMRPRLREQYFELASGATASC 428 FA E GA+D+A FL+RL TVNYG+ AFR VA L QA RP+LR QYFE ASGA+ SC Sbjct: 279 FANEQGARDYAHFLDRLRTTVNYGNDAFRQAVAIGLRQAVARPQLRAQYFEQASGASDSC 338 Query: 429 EDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVMFRLEALDDIARETVRSLRRAD 488 EDR+TLTWNGMQTA L ADV+DG+YD L QLLQHGRVMFRLEALD IARETV SLRR D Sbjct: 339 EDRITLTWNGMQTALLIADVEDGVYDGSLHQLLQHGRVMFRLEALDGIARETVNSLRRTD 398 Query: 489 PDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDVTADDVARAETSVREQEAAGFA 548 PDA+IDEIEVYLAYQTQLRD LELRH+APDMRFLN+S VT +DVARA +SVRE EA GF Sbjct: 399 PDADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFG 458 Query: 549 DFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPTRLNERLAEPGLTDDVDARRVV 608 +++ATRW+PW+ V++RIAP HAAM+++L +AM +EF +RL+E+LAE GLT D DA RV Sbjct: 459 EYVATRWQPWERVMRRIAPASHAAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAERVF 518 Query: 609 GAQILSEIACEIKGELMHKVLREQGLEL 636 GA+IL++IA IKGE M KVLR +GLEL Sbjct: 519 GAEILNDIARRIKGETMEKVLRGRGLEL 546 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MNTERAQPRAGIPFE---SESTEPTSRAAGQSPSCLTQWASALTRWATGAAAADLVSSQD 57 MN +R G FE SES+EP S P+ +W A +T A A+ SSQ Sbjct: 1 MNVQRPGLAVGPLFENPESESSEPGS------PAAAARWVEA----STEAEASAASSSQG 50 Query: 58 RVLATWAAEEGQGEDENRQEGVNRTRAWRDEGDVGDELNLSSLSLTALPASLLPRLRTLN 117 +++A AEE E QE V+RTRAWR+ GDV + L+LS LSLT L L+ LR LN Sbjct: 51 QIVAAPTAEERPWEGRP-QEAVSRTRAWREAGDVDEPLDLSFLSLTPLSIPLVSGLRRLN 109 Query: 118 VIGNQLSSLPARLPGGLRDLYASDNRLTSLPALPSRLRHLHLMANELSSLPAELPFRLRS 177 V NQL LP LPG L +L AS+NRLT LP LP+ L+ L++ N L++LP LP L Sbjct: 110 VNNNQLGDLPDTLPGTLLELEASENRLTRLPDLPAGLQRLNVENNRLTNLPEPLPAALEW 169 Query: 178 LTVDSNQLTDLP-ALPATIEELSASNNQLTSLPD 210 L NQLT LP +P + L A NNQLTS+P+ Sbjct: 170 LGAGYNQLTRLPEMIPPELIWLGARNNQLTSVPE 203 >emb|CCC55885.1| putative NopM [Sinorhizobium fredii] Length = 581 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 322/648 (49%), Positives = 407/648 (62%), Gaps = 81/648 (12%) Query: 1 MNTERAQPRAGI-PFESESTEPTSRAAGQSPSCLTQWASALTRWATGAAAADLVSSQDRV 59 MN AQ AG P SE E S +G + + A+T + T A S++ ++ Sbjct: 1 MNIGDAQQSAGSSPATSEEGEQESYLSGFA-RAVADLVEAMTGYRTPA------SARAQI 53 Query: 60 LATWAAEEGQGEDENRQEGVNRTRAWRDEGDVGDELNLSSLSLTALPASLLPRLRTLNVI 119 L W AEEGQGE ENR++G R R + G L+LSSLSLTALPA+L PRL L Sbjct: 54 LDNWVAEEGQGEAENRRQGRTRIRGSDNTGSH--SLDLSSLSLTALPAALPPRLLEL--- 108 Query: 120 GNQLSSLPARLPGGLRDLYASDNRLTSLPALPSRLRHLHLMANELSSLPAELPFRLRSLT 179 R RH NELSSLPA P L+ L Sbjct: 109 ---------------------------------RARH-----NELSSLPASFPPGLQHLL 130 Query: 180 VDSNQLTDLP-ALPATIEELSASNNQLTSLP-DLPARLRRLDVSENQLTSLPD-LPARLR 236 + N+LT LP ALPAT+ L ++N LTSLP +LPA L L+ S+N+LTSLPD LP+RL Sbjct: 131 ISHNRLTSLPDALPATLSRLEVADNSLTSLPANLPAGLEILNASDNRLTSLPDALPSRLT 190 Query: 237 YLDAGDNQLTSLP-GVPARLRYLDVSENQLTNLPETLPVGLEMLGASNNQLTGLPATVLT 295 L NQLT LP +P+ L LDVS NQL NLP+ LP L+ L S N+LTGLP +L Sbjct: 191 SLAVSGNQLTDLPDSLPSGLIELDVSSNQLANLPDPLPSTLQSLNLSGNRLTGLPEDLLE 250 Query: 296 --------QLGSASSIDVRSNPIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPL 347 +++ NP+P VLA+LA+A P A Sbjct: 251 GRVPNLSLSYPHLENLEFGDNPLPDDVLANLAAAEAPPQLAQQS---------------- 294 Query: 348 LHEVVADWLADEPGAVAAWQGFAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQA 407 L+E A WLAD+P +A WQ FA+EPGAQD+A FLERL GTVNYG+ FR +VA++L Q Sbjct: 295 LYEAAAHWLADDPATLAEWQHFADEPGAQDYAQFLERLRGTVNYGNDEFRQRVADDLRQT 354 Query: 408 AMRPRLREQYFELASGATASCEDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVM 467 A PRLREQ+F AS A ASCEDRVTL WNGMQTARLNADV+ G+YD +L +L+Q GRV Sbjct: 355 AANPRLREQFFAQASDANASCEDRVTLHWNGMQTARLNADVEGGVYDDRLGELIQRGRVA 414 Query: 468 FRLEALDDIARETVRSLRRADPDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDV 527 FRLEALD+IAR+ V SL DP NID++EVYLAYQ +LR+ LEL H+APDMRFL +S V Sbjct: 415 FRLEALDEIARDRVNSLLSLDP--NIDDVEVYLAYQHRLREPLELSHVAPDMRFLAVSHV 472 Query: 528 TADDVARAETSVREQEAAGFADFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPT 587 + DD A +RE+EA F D++ATRW+PW+TV++RIAPD+HAAM+DRL +AM +EF + Sbjct: 473 SEDDATEALDLIREREANQFTDYMATRWQPWETVLRRIAPDEHAAMQDRLVEAMGEEFQS 532 Query: 588 RLNERLAEPGLTDDVDARRVVGAQILSEIACEIKGELMHKVLREQGLE 635 RL++RLAE GL DVDA RV+GAQ+ ++IA EIKGE+M+++L E+GLE Sbjct: 533 RLDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEVMNRLLSERGLE 580 >ref|NP_768544.1| hypothetical protein blr1904 [Bradyrhizobium japonicum USDA 110] dbj|BAC47169.1| blr1904 [Bradyrhizobium japonicum USDA 110] Length = 585 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/586 (52%), Positives = 389/586 (66%), Gaps = 57/586 (9%) Query: 54 SSQDRVLATWAAEEGQGEDENRQEGVNRTRAWRDEGDVGDELNLSSLSLTALPASLLPRL 113 S++ ++L WAAEEGQGE ENR++G R R + G L+LSSLSLTALPA+L PRL Sbjct: 52 SARAQLLDNWAAEEGQGEAENRRQGRARIRGADNTGSH--SLDLSSLSLTALPAALPPRL 109 Query: 114 RTLNVIGNQLSSLPARLPGGLRDLYASDNRLTSLP-ALPSRLRHLHLMANELSSLPAELP 172 L N+LSSLPA P GL+ L S NRL SLP ALP+ L L + N L+SLPA L Sbjct: 110 LELRARHNELSSLPASFPPGLQHLLISHNRLISLPDALPATLSRLEVADNSLTSLPANL- 168 Query: 173 FRLRSLTVDSNQLTDLPALPATIEELSASNNQLTSLPD-LPARLRRLDVSENQLTSLPD- 230 PA +E L+AS+N+LTSLPD LP+RL L VS NQLT LPD Sbjct: 169 -------------------PAGLEILNASDNRLTSLPDALPSRLTSLAVSGNQLTDLPDY 209 Query: 231 LPARLRYLDAGDNQLTSLPG-VPARLRYLDVSENQLTNLPETLPVGLEMLGASNNQLTGL 289 LP+ L LD NQL LP +P+ L+ L++S N+LT+LPE L L G Sbjct: 210 LPSGLIELDVSSNQLADLPAPLPSTLQSLNLSGNRLTSLPEDL-------------LEGR 256 Query: 290 PATVLTQLGSASSIDVRSNPIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPLLH 349 + +++ NP+P VLA+LA+A P A L+ Sbjct: 257 VPNLSLSYPHLENLEFGDNPLPDDVLANLATAEAPPQLAQQS----------------LY 300 Query: 350 EVVADWLADEPGAVAAWQGFAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQAAM 409 E A WLAD+P +A WQ FA+EPGAQD+A FLERL TVNYG+ FR VA++L QAA Sbjct: 301 EAAAQWLADDPATLAKWQHFADEPGAQDYAQFLERLRETVNYGNDEFRQAVADDLQQAAA 360 Query: 410 RPRLREQYFELASGATASCEDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVMFR 469 P LREQ+F AS A ASCEDRVTL WNGMQTARLNADV+DG+YD +L L+Q GRV FR Sbjct: 361 NPTLREQFFAQASEANASCEDRVTLHWNGMQTARLNADVEDGVYDDRLGDLIQRGRVAFR 420 Query: 470 LEALDDIARETVRSLRRADPDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDVTA 529 LEALD+IAR+ + SL +P N+D+IEVYLAYQ +LR+ LEL H+APDMRFL +S V+ Sbjct: 421 LEALDEIARDRINSLASGNP--NVDDIEVYLAYQHRLREPLELSHVAPDMRFLAVSHVSE 478 Query: 530 DDVARAETSVREQEAAGFADFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPTRL 589 DD A VRE+EA+ F DF+A+RW+PW+TV++RIAPD+HAAM+DRL +AM +EF +RL Sbjct: 479 DDATEALDLVREREASQFTDFMASRWQPWETVLRRIAPDEHAAMQDRLVEAMGEEFQSRL 538 Query: 590 NERLAEPGLTDDVDARRVVGAQILSEIACEIKGELMHKVLREQGLE 635 ++RLAE GL DVDA RV+GAQ+ ++IA EIKGE+MH++L E+GLE Sbjct: 539 DQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEVMHRLLAERGLE 584 >gb|AAG60884.1|AF322013_3 ID431 [Bradyrhizobium japonicum] Length = 581 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 308/587 (52%), Positives = 389/587 (66%), Gaps = 57/587 (9%) Query: 53 VSSQDRVLATWAAEEGQGEDENRQEGVNRTRAWRDEGDVGDELNLSSLSLTALPASLLPR 112 S++ ++L WAAEEGQGE ENR++G R R + G L+LSSLSLTALPA+L PR Sbjct: 47 ASARAQLLDNWAAEEGQGEAENRRQGRARIRGADNTGSH--SLDLSSLSLTALPAALPPR 104 Query: 113 LRTLNVIGNQLSSLPARLPGGLRDLYASDNRLTSLP-ALPSRLRHLHLMANELSSLPAEL 171 L L N+LSSLPA P GL+ L S NRL SLP ALP+ L L + N L+SLPA L Sbjct: 105 LLELRARHNELSSLPASFPPGLQHLLISHNRLISLPDALPATLSRLEVADNSLTSLPANL 164 Query: 172 PFRLRSLTVDSNQLTDLPALPATIEELSASNNQLTSLPD-LPARLRRLDVSENQLTSLPD 230 PA +E L+AS+N+LTSLPD LP+RL L VS NQLT LPD Sbjct: 165 --------------------PAGLEILNASDNRLTSLPDALPSRLTSLAVSGNQLTDLPD 204 Query: 231 -LPARLRYLDAGDNQLTSLPG-VPARLRYLDVSENQLTNLPETLPVGLEMLGASNNQLTG 288 LP+ L LD NQL LP +P+ L+ L++S N+LT+LPE L L G Sbjct: 205 YLPSGLIELDVSSNQLADLPAPLPSTLQSLNLSGNRLTSLPEDL-------------LEG 251 Query: 289 LPATVLTQLGSASSIDVRSNPIPGPVLADLASATRGPDYAGPQVLLSMPLQPVEHQPPLL 348 + +++ NP+P VLA+LA+A P A L Sbjct: 252 RVPNLSLSYPHLENLEFGDNPLPDDVLANLATAEAPPQLAQQS----------------L 295 Query: 349 HEVVADWLADEPGAVAAWQGFAEEPGAQDFALFLERLAGTVNYGHQAFRDQVAENLLQAA 408 +E A WLAD+P +A WQ FA+EPGAQD+A FLERL TVNYG+ FR VA++L QAA Sbjct: 296 YEAAAQWLADDPATLAKWQHFADEPGAQDYAQFLERLRETVNYGNDEFRQAVADDLQQAA 355 Query: 409 MRPRLREQYFELASGATASCEDRVTLTWNGMQTARLNADVKDGLYDSQLDQLLQHGRVMF 468 P LREQ+F AS A ASCEDRVTL WNGMQTARLNADV+DG+YD +L L+Q GRV F Sbjct: 356 ANPTLREQFFAQASEANASCEDRVTLHWNGMQTARLNADVEDGVYDDRLGDLIQRGRVAF 415 Query: 469 RLEALDDIARETVRSLRRADPDANIDEIEVYLAYQTQLRDRLELRHIAPDMRFLNLSDVT 528 RLEALD+IAR+ + SL +P N+D+IEVYLAYQ +LR+ LEL H+APDMRFL +S V+ Sbjct: 416 RLEALDEIARDRINSLASGNP--NVDDIEVYLAYQHRLREPLELSHVAPDMRFLAVSHVS 473 Query: 529 ADDVARAETSVREQEAAGFADFLATRWEPWDTVVKRIAPDDHAAMRDRLADAMEDEFPTR 588 DD A VRE+EA+ F DF+A+RW+PW+TV++RIAPD+HAAM+DRL +AM +EF +R Sbjct: 474 EDDATEALDLVREREASQFTDFMASRWQPWETVLRRIAPDEHAAMQDRLVEAMGEEFQSR 533 Query: 589 LNERLAEPGLTDDVDARRVVGAQILSEIACEIKGELMHKVLREQGLE 635 L++RLAE GL DVDA RV+GAQ+ ++IA EIKGE+MH++L E+GLE Sbjct: 534 LDQRLAEHGLVGDVDAERVLGAQVRNQIAGEIKGEVMHRLLAERGLE 580