BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0078.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772725.1| acid--CoA ligase [Bradyrhizobium japonicum USDA... 744 0.0 ref|YP_001204384.1| putative O-succinylbenzoate-CoA ligase [Brad... 717 0.0 ref|ZP_07657192.1| 2-succinylbenzoate--CoA ligase [Roseibium sp.... 493 e-137 ref|YP_158159.1| putative ADP-producing CoA ligase, feruloyl-CoA... 446 e-123 ref|YP_782133.1| AMP-dependent synthetase and ligase [Rhodopseud... 426 e-117 >ref|NP_772725.1| acid--CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC51350.1| blr6085 [Bradyrhizobium japonicum USDA 110] Length = 511 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/510 (68%), Positives = 417/510 (81%) Query: 3 LDLCTLIERNAAYAPDKAALRFEGHALSYSGFNRRIGRVSYALKRQLGIKRGDRIAILSL 62 +DLC+LI+RNAA+APDK A+ F LSY+ F RI + + ALK++L + RGDR+AILSL Sbjct: 1 MDLCSLIDRNAAFAPDKTAIAFGRERLSYAAFAARIEQTATALKQELDVGRGDRVAILSL 60 Query: 63 NRPDYLTLLYACARLGAILVPLNWRLAAAEQLFILSDSGAKVLVLEQAFNAVLPALTRQL 122 NRPDYL LLYACARLGA+LVPLNWRLA AEQLFIL+D+GAKVLVLEQAF VL L R Sbjct: 61 NRPDYLVLLYACARLGAMLVPLNWRLAIAEQLFILTDAGAKVLVLEQAFEGVLSELVRTA 120 Query: 123 PDTCLVGLDFAPPGGSKLDDVLDECCGDEPTPDADLSCPVLIVYTSGTTGRPKGAVLRQD 182 P T +VGLDF PP G+ + +L P DLSCP+LIVYTSGTTGRPKGAVLRQ+ Sbjct: 121 PGTSVVGLDFVPPRGTTFESLLANSDLTSRNPHTDLSCPLLIVYTSGTTGRPKGAVLRQE 180 Query: 183 ALLWNGVMSQHMHDLTSTDHALTVLPLFHVGGLNIQTTPGLHHGATVTIQSRFSPEATFD 242 AL WNGVMSQHMH++TS DH LTVLPLFHVGGLNIQTTP L GATVTI +RF+P+ Sbjct: 181 ALFWNGVMSQHMHNMTSDDHVLTVLPLFHVGGLNIQTTPALQLGATVTIHARFTPDTALA 240 Query: 243 AFEHDRPTLAALVPAMMQALTDHPRWASADLSALKAICTGSTMVPQRLVERFARRGVPVL 302 A HDRPTL +VPA++QA ++HP W +ADLS+LKA+ TGST+VP L++RF RGVPVL Sbjct: 241 AIAHDRPTLTVMVPAIIQAASEHPAWTTADLSSLKAVATGSTIVPPHLIDRFVARGVPVL 300 Query: 303 QVYGATETSPIAVYTKLGADLAPDGASGLPGLCCEAAIIDDVGTKLPPGTPGEIVIRGPN 362 QVYG+TET PIA+YT+LG DL+ +G++GL GLCCEA +ID+ G ++P GTPGEI +RGPN Sbjct: 301 QVYGSTETCPIAIYTRLGGDLSREGSTGLAGLCCEAQVIDEAGREVPAGTPGEIAVRGPN 360 Query: 363 VFCGYWGDQQATREAFSDGWYRTGDIGRCDADGYFWVRDRKKNLIISGGENIYPAEVERV 422 VF YWG+ AT +A SDGWYRTGDIG CDADGYFW+RDRKKNLIISGGEN+YPAEVERV Sbjct: 361 VFFEYWGNADATHDALSDGWYRTGDIGLCDADGYFWIRDRKKNLIISGGENVYPAEVERV 420 Query: 423 LMGHPDVAECAVVGRRDPRWDEVPIAYVVRRPGSRIAAEALLTHVQSQLARFKVPREIIF 482 L+ HPDV+ECAV+GR DPRWDEVPIAYV+RRPG R+ AE L ++Q+QLARFKVPR+I+F Sbjct: 421 LLEHPDVSECAVIGRPDPRWDEVPIAYVIRRPGCRLEAEELRAYLQAQLARFKVPRDIVF 480 Query: 483 THELPKTALGKVQHFMLKELDTQSSPEGDS 512 +LP+TALGKVQHF+LK+LD QS G++ Sbjct: 481 VTDLPRTALGKVQHFLLKQLDAQSRARGET 510 >ref|YP_001204384.1| putative O-succinylbenzoate-CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL76147.1| putative O-succinylbenzoate-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 504 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/499 (68%), Positives = 408/499 (81%) Query: 3 LDLCTLIERNAAYAPDKAALRFEGHALSYSGFNRRIGRVSYALKRQLGIKRGDRIAILSL 62 +DLC+LIERNAA+ PDK A+RFEG L+Y+ F+ RI ++ ALK + G+ RGDR+AILSL Sbjct: 1 MDLCSLIERNAAFTPDKPAIRFEGATLTYAEFSARIAAMARALKSEFGVGRGDRVAILSL 60 Query: 63 NRPDYLTLLYACARLGAILVPLNWRLAAAEQLFILSDSGAKVLVLEQAFNAVLPALTRQL 122 NRPDYL LLYACARLGAILVPLNWRLA AEQ+FILSD+ AKVLVLEQAF VLPAL Q Sbjct: 61 NRPDYLVLLYACARLGAILVPLNWRLAVAEQVFILSDAAAKVLVLEQAFAPVLPALAEQH 120 Query: 123 PDTCLVGLDFAPPGGSKLDDVLDECCGDEPTPDADLSCPVLIVYTSGTTGRPKGAVLRQD 182 P+T VG+DF P G ++DD+L GD+ P DLSCP+LIVYTSGTTGRPKGAVLRQ+ Sbjct: 121 PETVPVGVDFTPASGLQIDDLLARGHGDDRNPHIDLSCPLLIVYTSGTTGRPKGAVLRQE 180 Query: 183 ALLWNGVMSQHMHDLTSTDHALTVLPLFHVGGLNIQTTPGLHHGATVTIQSRFSPEATFD 242 ALLWNGVMSQHMH LTS DH LTVLPLFHVGGLNIQTTP LHHGATVT+ +RF+P+ T Sbjct: 181 ALLWNGVMSQHMHGLTSDDHVLTVLPLFHVGGLNIQTTPALHHGATVTLYARFTPDTTLA 240 Query: 243 AFEHDRPTLAALVPAMMQALTDHPRWASADLSALKAICTGSTMVPQRLVERFARRGVPVL 302 A H+RPTL LVPA +QA+T+HP WA+ADLS+LKA+ TGS++VP L++R RGVPVL Sbjct: 241 AIVHERPTLTVLVPATIQAVTEHPGWAAADLSSLKAVSTGSSIVPPALIDRITARGVPVL 300 Query: 303 QVYGATETSPIAVYTKLGADLAPDGASGLPGLCCEAAIIDDVGTKLPPGTPGEIVIRGPN 362 QVYG+TET PIAVYT+LG DL+ G++GLPGLCCEA IID G +LP G GEI +RGPN Sbjct: 301 QVYGSTETCPIAVYTRLGGDLSRTGSTGLPGLCCEAKIIDREGDELPAGKAGEIAVRGPN 360 Query: 363 VFCGYWGDQQATREAFSDGWYRTGDIGRCDADGYFWVRDRKKNLIISGGENIYPAEVERV 422 VF YWG+ +AT++A DGWYRTGDI + DADGYF+V +RK N+IISGGEN+YPAE+ERV Sbjct: 361 VFFEYWGNAKATQQAIHDGWYRTGDIAQRDADGYFYVLERKNNMIISGGENVYPAEIERV 420 Query: 423 LMGHPDVAECAVVGRRDPRWDEVPIAYVVRRPGSRIAAEALLTHVQSQLARFKVPREIIF 482 L HPDV EC V+GR DPRWDEVP+A+VV+R + AE L H+QSQLAR+KVPR+I+F Sbjct: 421 LSEHPDVVECGVIGRPDPRWDEVPVAFVVKRKDCALDAETLRAHLQSQLARYKVPRDIVF 480 Query: 483 THELPKTALGKVQHFMLKE 501 +LP+TALGKVQH +L++ Sbjct: 481 VDDLPRTALGKVQHHLLRQ 499 >ref|ZP_07657192.1| 2-succinylbenzoate--CoA ligase [Roseibium sp. TrichSKD4] gb|EFO34142.1| 2-succinylbenzoate--CoA ligase [Roseibium sp. TrichSKD4] Length = 511 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 244/505 (48%), Positives = 328/505 (64%), Gaps = 12/505 (2%) Query: 4 DLCTLIERNAAYAPDKAALRFEGHALSYSGFNRRIGRVSYALKRQLGIKRGDRIAILSLN 63 DL + IE++A++ P K AL FEG A+SY+ + RI + LK + IK G+R+A L N Sbjct: 3 DLASWIEKHASFTPQKTALAFEGSAMSYAELSNRIKTCAAILKHRHQIKEGERVAFLGHN 62 Query: 64 RPDYLTLLYACARLGAILVPLNWRLAAAEQLFILSDSGAKVLVLEQAFNAVLPALTRQLP 123 PD+L L +ACARL A+ +PLNWRLAA E L+IL D+ ++ V E F L LP Sbjct: 63 SPDFLILFFACARLRALFLPLNWRLAAPEHLYILQDASPRLCVCEAHFKEHAEGLKESLP 122 Query: 124 DTCLVGLDFAPPGGSKLDDVLDECCGDEPTPDADL------SCPVLIVYTSGTTGRPKGA 177 D + DF+ DD L P A PVL+VYTSGTTG PKGA Sbjct: 123 DCQFLAADFSA------DDWLSLSSSQTGLPKAPAPAHGADDAPVLLVYTSGTTGHPKGA 176 Query: 178 VLRQDALLWNGVMSQHMHDLTSTDHALTVLPLFHVGGLNIQTTPGLHHGATVTIQSRFSP 237 VL Q A+ WN + S HMHD+T+ D LTVLP+FHVGGLNIQTTP L+ GATV + +F+P Sbjct: 177 VLTQKAIQWNALNSLHMHDMTAKDTVLTVLPMFHVGGLNIQTTPALYCGATVELHRKFNP 236 Query: 238 EATFDAFEHDRPTLAALVPAMMQALTDHPRWASADLSALKAICTGSTMVPQRLVERFARR 297 T A E RPTL LVPA +QAL HP W++ADLS+LK++ TGS++VP LV+ F R Sbjct: 237 SDTLKAIEDARPTLTVLVPATLQALISHPDWSAADLSSLKSVSTGSSVVPTGLVQAFHDR 296 Query: 298 GVPVLQVYGATETSPIAVYTKLGADLAPDGASGLPGLCCEAAIIDDVGTKLPPGTPGEIV 357 VPVLQVYG+TET PIA+Y K ++ G++G P L CEA ++DD GT + GEI+ Sbjct: 297 KVPVLQVYGSTETCPIAIYLKSEDAVSQLGSTGKPALHCEARVVDDHGTDIADNQSGEIL 356 Query: 358 IRGPNVFCGYWGDQQATREAFSDGWYRTGDIGRCDADGYFWVRDRKKNLIISGGENIYPA 417 I+GPN+ GYW ++ ++ + +GW+ TGD+G DA+G+F++ DRKK++IISGGENIYPA Sbjct: 357 IKGPNLMRGYWNNETESKRSLREGWFYTGDVGYRDANGFFYINDRKKDVIISGGENIYPA 416 Query: 418 EVERVLMGHPDVAECAVVGRRDPRWDEVPIAYVVRRPGSRIAAEALLTHVQSQLARFKVP 477 E+E VL +A+ VVGR D RW +VP+A V PG + +L H +LARFK P Sbjct: 417 ELELVLNEISGLAQATVVGRDDKRWVQVPVAVVSLLPGYTVTKTDILKHFDDRLARFKHP 476 Query: 478 REIIFTHELPKTALGKVQHFMLKEL 502 ++++ +LP A+GKVQ F +++L Sbjct: 477 KDVVILDQLPSNAMGKVQKFAVRQL 501 >ref|YP_158159.1| putative ADP-producing CoA ligase, feruloyl-CoA synthetase [Aromatoleum aromaticum EbN1] emb|CAI07258.1| putative ADP-producing CoA ligase,similar to feruloyl-CoA synthetase [Aromatoleum aromaticum EbN1] Length = 510 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/502 (48%), Positives = 316/502 (62%), Gaps = 4/502 (0%) Query: 3 LDLCTLIERNAAYAPDKAALRFEGHALSYSGFNRRIGRVSYALKRQLGIKRGDRIAILSL 62 ++L I+R+A P K A+RF LSY+ + R++ ALK G+ +A L Sbjct: 1 MELSEWIDRHAGLEPGKTAIRFPERDLSYAQLAGLVERLASALKAS-GVAHRSCVAYLGY 59 Query: 63 NRPDYLTLLYACARLGAILVPLNWRLAAAEQLFILSDSGAKVLVLEQAFNAVLPALTRQL 122 N P+ L L+ACARLGA+ +PLNWRLA E +L+D VL +E F A + A L Sbjct: 60 NSPEMLATLFACARLGALFMPLNWRLAGPEHRQLLADCPPSVLFVEPRFVAQIDAFRDAL 119 Query: 123 PDTCLVGLDFAPPGGSKLDDVLDECCGDEPTPDADL--SCPVLIVYTSGTTGRPKGAVLR 180 D LV D APP G + L E GD D + P+LI YTSGTTG+PKGA+L Sbjct: 120 ADVTLVAFD-APPQGWISYEALLERSGDAVPRDPQVGPQTPLLICYTSGTTGKPKGALLS 178 Query: 181 QDALLWNGVMSQHMHDLTSTDHALTVLPLFHVGGLNIQTTPGLHHGATVTIQSRFSPEAT 240 Q AL WN V S +H+L++ D LT LPLFHVGGLN QTTP L GATV + +F +AT Sbjct: 179 QGALAWNAVNSIDLHELSADDRILTTLPLFHVGGLNNQTTPALSAGATVVLHPKFDADAT 238 Query: 241 FDAFEHDRPTLAALVPAMMQALTDHPRWASADLSALKAICTGSTMVPQRLVERFARRGVP 300 FDA E +R TL LVPA ++ + PRW SADLS+L+ I TGST+VP+RL+ RRGVP Sbjct: 239 FDAIEQERITLTVLVPAQLEMMIARPRWQSADLSSLRMITTGSTIVPERLIREVHRRGVP 298 Query: 301 VLQVYGATETSPIAVYTKLGADLAPDGASGLPGLCCEAAIIDDVGTKLPPGTPGEIVIRG 360 ++Q+YG+TET PIA Y K G++G C I+ D G + PG GEI++RG Sbjct: 299 LVQIYGSTETCPIAAYVKPADAQRKAGSAGRAAPHCSLRIVGDDGHDVKPGATGEILVRG 358 Query: 361 PNVFCGYWGDQQATREAFSDGWYRTGDIGRCDADGYFWVRDRKKNLIISGGENIYPAEVE 420 PNV YW D QA+ DGW+RTGD+G D +GY WV RKK +IISGGENIYPAE+E Sbjct: 359 PNVMNAYWNDLQASAAVLKDGWFRTGDMGHQDGEGYLWVDGRKKEMIISGGENIYPAEIE 418 Query: 421 RVLMGHPDVAECAVVGRRDPRWDEVPIAYVVRRPGSRIAAEALLTHVQSQLARFKVPREI 480 +L PD+AE AVVGR D RW EV +A VV G + A +L ++ ++AR+K+P+E+ Sbjct: 419 NLLGESPDIAEVAVVGRLDERWGEVVVAVVVPLEGRTLDAGHVLQLLEGRIARYKLPKEV 478 Query: 481 IFTHELPKTALGKVQHFMLKEL 502 +F ELP+TALGKV+ +++L Sbjct: 479 VFLDELPRTALGKVRKDDVRQL 500 >ref|YP_782133.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] gb|ABJ07153.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] Length = 511 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 222/492 (45%), Positives = 302/492 (61%), Gaps = 3/492 (0%) Query: 3 LDLCTLIERNAAYAPDKAALRFEGHALSYSGFNRRIGRVSYALKRQLGIKRGDRIAILSL 62 +++ I+R+AA+AP+ +ALRF G + +Y F I + L LGI +GD +A L Sbjct: 1 MNIARWIDRHAAFAPEGSALRFAGESTTYRAFAAEIDATARKLA-SLGITQGDIVAYLGF 59 Query: 63 NRPDYLTLLYACARLGAILVPLNWRLAAAEQLFILSDSGAKVLVLEQAFNAVLPALTRQL 122 N P L LL+AC R+GA+L PLNWRLAA E +L D +++++ A L Sbjct: 60 NDPALLALLFACGRIGAVLTPLNWRLAAPEHERMLRDCAPRLVLVADEHIAHAEPLRATG 119 Query: 123 PDTCLVGLDFAPPGGSKLDDVLDECCGDEPTPDADLSCPVLIVYTSGTTGRPKGAVLRQD 182 T L P G D++ E G P D D PVL+ YTSG TG PKG V D Sbjct: 120 NATRWASLSRVP-GWLPWQDIVPEGTGLPPRED-DGDLPVLLCYTSGATGTPKGVVHTHD 177 Query: 183 ALLWNGVMSQHMHDLTSTDHALTVLPLFHVGGLNIQTTPGLHHGATVTIQSRFSPEATFD 242 +L WN V S HMHDLTS D LT LP+FHVGGLNI TTP +H GA+VT+ ++F P D Sbjct: 178 SLFWNAVNSAHMHDLTSADRVLTTLPMFHVGGLNILTTPAMHAGASVTLHAKFDPGEAID 237 Query: 243 AFEHDRPTLAALVPAMMQALTDHPRWASADLSALKAICTGSTMVPQRLVERFARRGVPVL 302 E +R TL LVPA + A+ HPRW ADLS+L+A+ TGST+V V RG+ ++ Sbjct: 238 TIERERITLTVLVPAQLTAMMAHPRWNRADLSSLRAVTTGSTIVSASFVHEVNARGLRLI 297 Query: 303 QVYGATETSPIAVYTKLGADLAPDGASGLPGLCCEAAIIDDVGTKLPPGTPGEIVIRGPN 362 Q+YG+TET P+A Y ++ + G++GLP L C+ I+D G + PG GEI++RG N Sbjct: 298 QIYGSTETCPVAAYQRVDSAERKAGSAGLPALHCDLRIVDLDGRDVAPGDNGEILVRGRN 357 Query: 363 VFCGYWGDQQATREAFSDGWYRTGDIGRCDADGYFWVRDRKKNLIISGGENIYPAEVERV 422 + Y +AT A DGWY TGDIG D +GY +V RK ++IISGGEN+YPAE+E + Sbjct: 358 LMREYLNAPEATAAALRDGWYHTGDIGHLDDEGYLFVAARKSDMIISGGENVYPAEIENI 417 Query: 423 LMGHPDVAECAVVGRRDPRWDEVPIAYVVRRPGSRIAAEALLTHVQSQLARFKVPREIIF 482 L+ P +A +VVGR DP W E +A +V G+++A +L +Q ++AR+K PREI+F Sbjct: 418 LLEFPGIAAASVVGRPDPHWGEAIVAVIVPALGAKVAETEVLALLQGRIARYKHPREIVF 477 Query: 483 THELPKTALGKV 494 +LP+ ALGKV Sbjct: 478 MDDLPRNALGKV 489