BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0023.p (538 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769403.1| cbb3-type cytochrome c oxidase subunit I [Brady... 931 0.0 ref|ZP_08628816.1| cytochrome c oxidase subunit CcoN [Bradyrhizo... 929 0.0 ref|YP_001238831.1| cbb3-type cytochrome c oxidase subunit I [Br... 921 0.0 ref|YP_001204500.1| cbb3-type cytochrome c oxidase subunit I [Br... 919 0.0 ref|YP_529913.1| cbb3-type cytochrome c oxidase subunit I [Rhodo... 907 0.0 >ref|NP_769403.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium japonicum USDA 110] sp|Q03073.1|FIXN_BRAJA RecName: Full=Cytochrome c oxidase subunit 1 homolog, bacteroid; AltName: Full=Cytochrome CBB3 subunit 1; AltName: Full=Cytochrome c oxidase polypeptide I homolog; AltName: Full=Heme B/copper cytochrome c oxidase subunit gb|AAA26203.1| membrane protein [Bradyrhizobium japonicum] emb|CAA06279.1| FixN protein [Bradyrhizobium japonicum] dbj|BAC48028.1| cytochrome-c oxidase [Bradyrhizobium japonicum USDA 110] Length = 549 Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/539 (85%), Positives = 501/539 (92%), Gaps = 2/539 (0%) Query: 1 MGEAGLMSVFAVSAYVFFFAGAMGHDSAFTFHALLASAASLTATGVILNRYYERPAQLPP 60 +GE+GL VFA +A++ A A D+ F FHA L++AAS+ A I+NRY+ERPA LPP Sbjct: 12 IGESGLAVVFAATAFLCVIAAAKALDAPFAFHAALSAAASVAAVFCIVNRYFERPAALPP 71 Query: 61 AQINGRPNYNLGPIKFASVLAMFWGIAGFSIGLLIASQLAWPALNFDLPWASFGRLRPLH 120 A+INGRPNYN+GPIKF+S +AMFWGIAGF +GL+IASQLAWPALNFDLPW SFGRLRPLH Sbjct: 72 AEINGRPNYNMGPIKFSSFMAMFWGIAGFLVGLIIASQLAWPALNFDLPWISFGRLRPLH 131 Query: 121 TSAVIFAFGGNVLIATSFYVVQKTCRTRLAGDLAPWFVVVGYNFFILIAGTGYLFGVTQS 180 TSAVIFAFGGNVLIATSFYVVQK+CR RLAGDLAPWFVVVGYNFFIL+AGTGYL GVTQS Sbjct: 132 TSAVIFAFGGNVLIATSFYVVQKSCRVRLAGDLAPWFVVVGYNFFILVAGTGYLLGVTQS 191 Query: 181 KEYAEPEWYADLWLTIVWITYLIVFVATLLKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 240 KEYAEPEWYADLWLTIVW+ YL+VF+AT++KRKEPHIFVANWFYLAFIVTIAVLHLGNNP Sbjct: 192 KEYAEPEWYADLWLTIVWVVYLLVFLATIIKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 251 Query: 241 ALPVSVFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 300 ALPVS FGSKSY+AWGG+QDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERP+YSYR Sbjct: 252 ALPVSAFGSKSYVAWGGIQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPIYSYR 311 Query: 301 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGMMTLSGAW 360 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMING+MTLSGAW Sbjct: 312 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAW 371 Query: 361 DKLRTDPVLRMLVVSVAFYGMATFEGPTMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS 420 DKLRTDPVLRMLVVSVAFYGM+TFEGP M+IKVVNSLSHYTDWT+GHVHSGALGWVGFVS Sbjct: 372 DKLRTDPVLRMLVVSVAFYGMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVS 431 Query: 421 FGALYCLIPWLWNRQ-LYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGF 479 FGALYCL+PW WNR+ LYSLKLVNWHFW+AT+GIVLYISAMWVSGILQGLMWRAYTSLGF Sbjct: 432 FGALYCLVPWAWNRKGLYSLKLVNWHFWVATLGIVLYISAMWVSGILQGLMWRAYTSLGF 491 Query: 480 LEYSFIESVEAMHPFYIIRAAGGALFLIGALIMAANLWMTVNAREADQIQDARALQVAE 538 LEYSFIE+VEAMHPFYIIRAAGG LFLIGALIMA NLWMTV EA+ +Q ALQ AE Sbjct: 492 LEYSFIETVEAMHPFYIIRAAGGGLFLIGALIMAYNLWMTVRVGEAE-VQMPVALQPAE 549 >ref|ZP_08628816.1| cytochrome c oxidase subunit CcoN [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08175.1| cytochrome c oxidase subunit CcoN [Bradyrhizobiaceae bacterium SG-6C] Length = 550 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/538 (85%), Positives = 492/538 (91%), Gaps = 1/538 (0%) Query: 2 GEAGLMSVFAVSAYVFFFAGAMGHDSAFTFHALLASAASLTATGVILNRYYERPAQLPPA 61 GE L + FAVS + A A D+AF FHA +A ASL A I+NRY++RPA L P Sbjct: 13 GEGSLAAFFAVSVLLCLVAAAKAQDAAFAFHAYVAMGASLIAAFAIINRYFDRPASLLPQ 72 Query: 62 QINGRPNYNLGPIKFASVLAMFWGIAGFSIGLLIASQLAWPALNFDLPWASFGRLRPLHT 121 +I GRPNYNL PIK ASVL++FWGIAGF++GLLIASQLAWP LNFDLPW +FGRLRPLHT Sbjct: 73 EIGGRPNYNLAPIKVASVLSVFWGIAGFTVGLLIASQLAWPQLNFDLPWTTFGRLRPLHT 132 Query: 122 SAVIFAFGGNVLIATSFYVVQKTCRTRLAGDLAPWFVVVGYNFFILIAGTGYLFGVTQSK 181 SAVIFAFGGNVLIATSFYVVQKTCR RLAGDLAPWFVV+GYNFFILIAGTGYL GVTQSK Sbjct: 133 SAVIFAFGGNVLIATSFYVVQKTCRVRLAGDLAPWFVVLGYNFFILIAGTGYLLGVTQSK 192 Query: 182 EYAEPEWYADLWLTIVWITYLIVFVATLLKRKEPHIFVANWFYLAFIVTIAVLHLGNNPA 241 EYAEPEWYADL LT+VW+TYL+VFVATL+KRKEPHIFVANWFYLAFIVTIAVLHLGNNP Sbjct: 193 EYAEPEWYADLLLTVVWVTYLLVFVATLIKRKEPHIFVANWFYLAFIVTIAVLHLGNNPG 252 Query: 242 LPVSVFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRL 301 +PVS+FGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRL Sbjct: 253 VPVSLFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRL 312 Query: 302 SIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGMMTLSGAWD 361 SIIHFWA+IFLYIWAGPHHLHYTALPDW QTLGMTFSIMLWMPSWGGMING+MTLSGAWD Sbjct: 313 SIIHFWAIIFLYIWAGPHHLHYTALPDWAQTLGMTFSIMLWMPSWGGMINGLMTLSGAWD 372 Query: 362 KLRTDPVLRMLVVSVAFYGMATFEGPTMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVSF 421 KLRTDPVLRMLVVSVAFYGMATFEGP M++K VNSLSHYTDWT+GHVHSGALGWVGFVSF Sbjct: 373 KLRTDPVLRMLVVSVAFYGMATFEGPLMSVKAVNSLSHYTDWTIGHVHSGALGWVGFVSF 432 Query: 422 GALYCLIPWLWNRQ-LYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGFL 480 GALYCL+PWLW+R+ LYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGFL Sbjct: 433 GALYCLVPWLWDRKGLYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGFL 492 Query: 481 EYSFIESVEAMHPFYIIRAAGGALFLIGALIMAANLWMTVNAREADQIQDARALQVAE 538 EYSFIE+VEAMHPFYIIRAAGGALFLIG+LIMA NLWMT EA ++ +RALQ AE Sbjct: 493 EYSFIETVEAMHPFYIIRAAGGALFLIGSLIMAYNLWMTARTDEASEMSSSRALQPAE 550 >ref|YP_001238831.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium sp. BTAi1] gb|ABQ34925.1| Cytochrome c oxidase polypeptide I [Bradyrhizobium sp. BTAi1] Length = 539 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/539 (85%), Positives = 500/539 (92%), Gaps = 3/539 (0%) Query: 1 MGEAGLMSVFAVSAYVFFFAGAMGHDSAFTFHALLASAASLTATGVILNRYYERPAQLPP 60 +GE+GL FAV+A++ FA A D+AF FHA LA+AAS + ILNRY+ER +LPP Sbjct: 3 IGESGLSLTFAVTAFLCVFAAAKALDTAFAFHASLAAAASAASVFFILNRYFER-GELPP 61 Query: 61 AQINGRPNYNLGPIKFASVLAMFWGIAGFSIGLLIASQLAWPALNFDLPWASFGRLRPLH 120 +INGRPNYNLGPIKF+S +AMFWGIAGF++GL+IASQLAWPALNFDLPW SFGRLRPLH Sbjct: 62 QEINGRPNYNLGPIKFSSFMAMFWGIAGFAVGLIIASQLAWPALNFDLPWTSFGRLRPLH 121 Query: 121 TSAVIFAFGGNVLIATSFYVVQKTCRTRLAGDLAPWFVVVGYNFFILIAGTGYLFGVTQS 180 TSAVIFAFGGNVL+ATSFYVVQ+TCR RLAGDLAPWFVV+GYNFFILIAGTGYL GVT+ Sbjct: 122 TSAVIFAFGGNVLLATSFYVVQRTCRVRLAGDLAPWFVVIGYNFFILIAGTGYLLGVTEG 181 Query: 181 KEYAEPEWYADLWLTIVWITYLIVFVATLLKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 240 KEYAEPEWY+DLWLTIVW+ YL+VF+ T++KRKEPHIFVANWFYLAFIVTIAVLHLGNNP Sbjct: 182 KEYAEPEWYSDLWLTIVWVVYLLVFLVTVIKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 241 Query: 241 ALPVSVFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 300 ALPVS FGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR Sbjct: 242 ALPVSFFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 301 Query: 301 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGMMTLSGAW 360 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMING+MTLSGAW Sbjct: 302 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAW 361 Query: 361 DKLRTDPVLRMLVVSVAFYGMATFEGPTMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS 420 DKLRTDPVLRMLVVSVAFYGM+TFEGP M+IKVVNSLSHYTDWT+GHVHSGALGWVGFVS Sbjct: 362 DKLRTDPVLRMLVVSVAFYGMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVS 421 Query: 421 FGALYCLIPWLWNRQ-LYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGF 479 FGALYCL+PW+WNR+ LYSLKLVNWHFW AT+GIVLYISAMWVSGILQGLMWR+YT+LGF Sbjct: 422 FGALYCLVPWIWNRKGLYSLKLVNWHFWTATLGIVLYISAMWVSGILQGLMWRSYTALGF 481 Query: 480 LEYSFIESVEAMHPFYIIRAAGGALFLIGALIMAANLWMTVNAREADQIQDARALQVAE 538 LEYSFIE+VEAMHPFYIIRAAGGALFLIG+LIMA NLWMTV E +++Q ALQ AE Sbjct: 482 LEYSFIETVEAMHPFYIIRAAGGALFLIGSLIMAYNLWMTVRVGE-EEVQSPVALQPAE 539 >ref|YP_001204500.1| cbb3-type cytochrome c oxidase subunit I [Bradyrhizobium sp. ORS 278] emb|CAL76263.1| Cytochrome c oxidase polypeptide I; fixN homolog [Bradyrhizobium sp. ORS 278] Length = 564 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/539 (84%), Positives = 499/539 (92%), Gaps = 3/539 (0%) Query: 1 MGEAGLMSVFAVSAYVFFFAGAMGHDSAFTFHALLASAASLTATGVILNRYYERPAQLPP 60 +GE+GL FAV+A++ FA A D+AF FHA LA+AAS + ILNRY+ER +LP Sbjct: 28 IGESGLTLTFAVTAFLCIFAAAKALDTAFAFHASLAAAASAASVFFILNRYFER-GELPA 86 Query: 61 AQINGRPNYNLGPIKFASVLAMFWGIAGFSIGLLIASQLAWPALNFDLPWASFGRLRPLH 120 +INGRPNYNLGPIKF+S +AMFWGIAGF++GL+IASQLAWPALNFDLPW SFGRLRPLH Sbjct: 87 QEINGRPNYNLGPIKFSSFMAMFWGIAGFAVGLIIASQLAWPALNFDLPWTSFGRLRPLH 146 Query: 121 TSAVIFAFGGNVLIATSFYVVQKTCRTRLAGDLAPWFVVVGYNFFILIAGTGYLFGVTQS 180 TSAVIFAFGGNVL+ATSFYVVQ+TCR RLAGDLAPWFVV+GYNFFILIAGTGYL GVT+ Sbjct: 147 TSAVIFAFGGNVLLATSFYVVQRTCRVRLAGDLAPWFVVIGYNFFILIAGTGYLLGVTEG 206 Query: 181 KEYAEPEWYADLWLTIVWITYLIVFVATLLKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 240 KEYAEPEWY+DLWLTIVW+ YL+VF+ T++KRKEPHIFVANWFYLAFIVTIAVLHLGNNP Sbjct: 207 KEYAEPEWYSDLWLTIVWVVYLLVFLTTIIKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 266 Query: 241 ALPVSVFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 300 ALPVS FGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR Sbjct: 267 ALPVSFFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 326 Query: 301 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGMMTLSGAW 360 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMING+MTLSGAW Sbjct: 327 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAW 386 Query: 361 DKLRTDPVLRMLVVSVAFYGMATFEGPTMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS 420 DKLRTDPVLRMLVVSVAFYGM+TFEGP M+IKVVNSLSHYTDWT+GHVHSGALGWVGFVS Sbjct: 387 DKLRTDPVLRMLVVSVAFYGMSTFEGPMMSIKVVNSLSHYTDWTIGHVHSGALGWVGFVS 446 Query: 421 FGALYCLIPWLWNRQ-LYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGF 479 FGALYCL+PW+WNR+ LYSLKLVNWHFW AT+GIVLYISAMWVSGILQGLMWR+YT+LGF Sbjct: 447 FGALYCLVPWIWNRKGLYSLKLVNWHFWTATLGIVLYISAMWVSGILQGLMWRSYTALGF 506 Query: 480 LEYSFIESVEAMHPFYIIRAAGGALFLIGALIMAANLWMTVNAREADQIQDARALQVAE 538 LEYSFIE+VEAMHPFYIIRAAGGALFLIG+LIMA NLWMTV E +++Q ALQ AE Sbjct: 507 LEYSFIETVEAMHPFYIIRAAGGALFLIGSLIMAYNLWMTVRVGE-EEVQSPVALQPAE 564 >ref|YP_529913.1| cbb3-type cytochrome c oxidase subunit I [Rhodopseudomonas palustris BisB18] gb|ABD85594.1| cytochrome c oxidase, cbb3-type, subunit I [Rhodopseudomonas palustris BisB18] Length = 550 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/539 (82%), Positives = 479/539 (88%), Gaps = 1/539 (0%) Query: 1 MGEAGLMSVFAVSAYVFFFAGAMGHDSAFTFHALLASAASLTATGVILNRYYERPAQLPP 60 +GE GL+++F V + A DSAF FHA + +A S A I R+ RPA PP Sbjct: 12 IGEGGLLALFTVMVALCVLAVIKAQDSAFAFHAAIGAAVSAWAVFAIFTRFSGRPAARPP 71 Query: 61 AQINGRPNYNLGPIKFASVLAMFWGIAGFSIGLLIASQLAWPALNFDLPWASFGRLRPLH 120 +ING PNYN GP+KF S +AMFWGIAGFS+GL+IA QLA+P LNFD+ W SFGRLRPLH Sbjct: 72 QEINGVPNYNFGPVKFCSFMAMFWGIAGFSVGLMIALQLAFPLLNFDIQWISFGRLRPLH 131 Query: 121 TSAVIFAFGGNVLIATSFYVVQKTCRTRLAGDLAPWFVVVGYNFFILIAGTGYLFGVTQS 180 TSAV+FAFGGNVL+ATS YVVQKT R RLAGDLAPWFVV+GYN FILIAGTGYL GVTQS Sbjct: 132 TSAVVFAFGGNVLLATSLYVVQKTSRVRLAGDLAPWFVVIGYNVFILIAGTGYLLGVTQS 191 Query: 181 KEYAEPEWYADLWLTIVWITYLIVFVATLLKRKEPHIFVANWFYLAFIVTIAVLHLGNNP 240 KEYAEPEWY+D LT+VW+ YL+VF+ TL+KRKEPHIFVANWFYLAFI+TIAVLHLGNNP Sbjct: 192 KEYAEPEWYSDALLTVVWVAYLLVFLMTLVKRKEPHIFVANWFYLAFIITIAVLHLGNNP 251 Query: 241 ALPVSVFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYR 300 A+PVS FGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERP+YSYR Sbjct: 252 AVPVSWFGSKSYIAWGGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPIYSYR 311 Query: 301 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGMMTLSGAW 360 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMING+MTLSGAW Sbjct: 312 LSIIHFWALIFLYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAW 371 Query: 361 DKLRTDPVLRMLVVSVAFYGMATFEGPTMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS 420 DKLRTDPVLRMLVVSVAFYGM+TFEGP MAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS Sbjct: 372 DKLRTDPVLRMLVVSVAFYGMSTFEGPMMAIKVVNSLSHYTDWTVGHVHSGALGWVGFVS 431 Query: 421 FGALYCLIPWLWNR-QLYSLKLVNWHFWIATIGIVLYISAMWVSGILQGLMWRAYTSLGF 479 FGALYCL+PW+WNR QLYSLKLVNWHFWIAT+GIVLYISAMWVSGILQGLMWRAYTSLGF Sbjct: 432 FGALYCLVPWVWNRKQLYSLKLVNWHFWIATLGIVLYISAMWVSGILQGLMWRAYTSLGF 491 Query: 480 LEYSFIESVEAMHPFYIIRAAGGALFLIGALIMAANLWMTVNAREADQIQDARALQVAE 538 LEYSFIESVEAMHPFY+IRAAGG LFL GALIMA NLWMTV E+ + Q + ALQ AE Sbjct: 492 LEYSFIESVEAMHPFYMIRAAGGGLFLCGALIMAYNLWMTVRTGESSETQPSVALQAAE 550