BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0022.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizo... 390 e-106 ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [B... 381 e-104 ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [B... 379 e-103 ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhod... 378 e-103 ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Brad... 377 e-103 >ref|ZP_08628817.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08176.1| cytochrome c oxidase subunit CcoO [Bradyrhizobiaceae bacterium SG-6C] Length = 244 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/244 (74%), Positives = 204/244 (83%), Gaps = 16/244 (6%) Query: 1 MSLWNRHKIFEKNSIILIAGILAVIAIGGLVEITPLFYLKSTIEAX-----------AGR 49 MS W RH+IFEKNSI+LI GILAVIAIGGLVEITPLFYLKSTIE AGR Sbjct: 1 MSFWKRHQIFEKNSIVLIIGILAVIAIGGLVEITPLFYLKSTIEKVEGMRPYTPLELAGR 60 Query: 50 NIYVREGCYVCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARIGGKYS 109 NIYVREGCY+CHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLAR+G KYS Sbjct: 61 NIYVREGCYLCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGAKYS 120 Query: 110 DEWHVTHLTNPRAIVPQSVMPGYPSLANTEVDLTDMVAHLRTNRAIGVPYSEDQIKNAVA 169 DEWHVTHL NPRAIVPQSVMPGYP L+ TEVD + + HL+ NR +GVPYS++QI NA++ Sbjct: 121 DEWHVTHLVNPRAIVPQSVMPGYPFLSETEVDTSTIAGHLQANRTVGVPYSDEQIANAIS 180 Query: 170 DMKTQLDPDSANVESFQKRYPKAAVRNFDGRAGNPTELX-----LQMLGTLIDFKLYDEK 224 D++ Q DPD+ +V++ QKRYPKA RNFDG+ GNPTE+ LQMLGTL+DFKLYDEK Sbjct: 181 DLQAQADPDNGDVDALQKRYPKAVARNFDGKPGNPTEMDALVAYLQMLGTLVDFKLYDEK 240 Query: 225 ANLR 228 ANLR Sbjct: 241 ANLR 244 >ref|YP_001238832.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp. BTAi1] gb|ABQ34926.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. BTAi1] Length = 244 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/244 (72%), Positives = 203/244 (83%), Gaps = 16/244 (6%) Query: 1 MSLWNRHKIFEKNSIILIAGILAVIAIGGLVEITPLFYLKSTIEAX-----------AGR 49 MS W RH++FEKNSIIL+ GIL VIAIGGLVEITPLFYLKSTIEA AGR Sbjct: 1 MSFWQRHQVFEKNSIILVIGILLVIAIGGLVEITPLFYLKSTIEAVDGIRPYTPLELAGR 60 Query: 50 NIYVREGCYVCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARIGGKYS 109 NIYVREGCY+CHSQM+RPLRDEVERYGH+SLAAESMYDHPFQWGSKRTGPDLAR+G KYS Sbjct: 61 NIYVREGCYLCHSQMVRPLRDEVERYGHFSLAAESMYDHPFQWGSKRTGPDLARVGNKYS 120 Query: 110 DEWHVTHLTNPRAIVPQSVMPGYPSLANTEVDLTDMVAHLRTNRAIGVPYSEDQIKNAVA 169 D+WHVTHLTNPRAIVPQS+MPGYP L TE++ ++ HL+T RA+GVPY++DQI NA A Sbjct: 121 DDWHVTHLTNPRAIVPQSIMPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAA 180 Query: 170 DMKTQLDPDSANVESFQKRYPKAAVRNFDGRAGNPTELX-----LQMLGTLIDFKLYDEK 224 D+K Q+DPD A E+ KRYPKA VRNFDG+AG PTE+ LQMLGTL+DFK+Y+EK Sbjct: 181 DLKAQVDPDGAGAEALTKRYPKAVVRNFDGKAGAPTEMDALVAYLQMLGTLVDFKIYNEK 240 Query: 225 ANLR 228 ANLR Sbjct: 241 ANLR 244 >ref|YP_001204501.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium sp. ORS 278] emb|CAL76264.1| cytochrome-c oxidase fixO chain [Bradyrhizobium sp. ORS 278] Length = 249 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/244 (72%), Positives = 202/244 (82%), Gaps = 16/244 (6%) Query: 1 MSLWNRHKIFEKNSIILIAGILAVIAIGGLVEITPLFYLKSTIEAX-----------AGR 49 MS W RH++FEKNSIIL+ GIL VIAIGGLVEITPLFYLKSTIEA AGR Sbjct: 6 MSFWQRHQVFEKNSIILVIGILLVIAIGGLVEITPLFYLKSTIEAVDGVRPYTPLELAGR 65 Query: 50 NIYVREGCYVCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARIGGKYS 109 NIYVREGCY+CHSQMIRPLRDEVERYGH+SLAAESMYDHPFQWGSKRTGPDLAR+G KYS Sbjct: 66 NIYVREGCYLCHSQMIRPLRDEVERYGHFSLAAESMYDHPFQWGSKRTGPDLARVGSKYS 125 Query: 110 DEWHVTHLTNPRAIVPQSVMPGYPSLANTEVDLTDMVAHLRTNRAIGVPYSEDQIKNAVA 169 D+WHVTHLTNPRAIVPQS+MPGYP L TE++ ++ HL+T RA+GVPY++DQI NA A Sbjct: 126 DDWHVTHLTNPRAIVPQSIMPGYPFLKETELNADNVADHLKTLRAVGVPYTDDQIANAAA 185 Query: 170 DMKTQLDPDSANVESFQKRYPKAAVRNFDGRAGNPTEL-----XLQMLGTLIDFKLYDEK 224 D+K Q+DPD E+ KRYPKA VRNFDG+AG PTE+ LQMLGTL+DFK+Y+EK Sbjct: 186 DLKAQVDPDGPGAEALTKRYPKAVVRNFDGKAGAPTEMDALVAYLQMLGTLVDFKIYNEK 245 Query: 225 ANLR 228 ANLR Sbjct: 246 ANLR 249 >ref|YP_529912.1| cbb3-type cytochrome c oxidase subunit II [Rhodopseudomonas palustris BisB18] gb|ABD85593.1| cytochrome c oxidase, cbb3-type, subunit II [Rhodopseudomonas palustris BisB18] Length = 245 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/243 (74%), Positives = 200/243 (82%), Gaps = 16/243 (6%) Query: 2 SLWNRHKIFEKNSIILIAGILAVIAIGGLVEITPLFYLKSTIEAX-----------AGRN 50 + W+RHKIFEKNSI+LI GILAVIAIGGLVEITPLFYLKSTIE AGRN Sbjct: 3 TFWDRHKIFEKNSIVLIVGILAVIAIGGLVEITPLFYLKSTIEKVDGVRPYTPLELAGRN 62 Query: 51 IYVREGCYVCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARIGGKYSD 110 I+VREGCY+CHSQMIRPLRDEVERYGH+SLAAESMYDHPFQWGSKRTGPDLAR+GGKYSD Sbjct: 63 IFVREGCYLCHSQMIRPLRDEVERYGHFSLAAESMYDHPFQWGSKRTGPDLARVGGKYSD 122 Query: 111 EWHVTHLTNPRAIVPQSVMPGYPSLANTEVDLTDMVAHLRTNRAIGVPYSEDQIKNAVAD 170 +WHVTHL NPR+IVPQSVMPGY LA TEVD + HLRTNR +GVPY++D+I NA AD Sbjct: 123 DWHVTHLKNPRSIVPQSVMPGYAFLARTEVDTDHIADHLRTNRIVGVPYTDDEIANASAD 182 Query: 171 MKTQLDPDSANVESFQKRYPKAAVRNFDGRAGNPTELX-----LQMLGTLIDFKLYDEKA 225 MK Q++PD+ KRYPKA VRNFDG+ GNPTEL LQMLGTL+DFKLY+EKA Sbjct: 183 MKAQVNPDTPEAAELLKRYPKAVVRNFDGKDGNPTELDALISYLQMLGTLVDFKLYNEKA 242 Query: 226 NLR 228 NLR Sbjct: 243 NLR 245 >ref|NP_769404.1| cbb3-type cytochrome c oxidase subunit II [Bradyrhizobium japonicum USDA 110] gb|AAA26204.1| transmembrane protein [Bradyrhizobium japonicum] emb|CAA06280.1| FixO protein [Bradyrhizobium japonicum] dbj|BAC48029.1| cytochrome-c oxidase [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/244 (72%), Positives = 200/244 (81%), Gaps = 16/244 (6%) Query: 1 MSLWNRHKIFEKNSIILIAGILAVIAIGGLVEITPLFYLKSTIEAX-----------AGR 49 MS W RH++FEKNSIILI GIL VIAIGGLVEITPLFYLKSTIE AGR Sbjct: 1 MSFWTRHQVFEKNSIILIVGILLVIAIGGLVEITPLFYLKSTIEKVDGVRPYTPLELAGR 60 Query: 50 NIYVREGCYVCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARIGGKYS 109 N+YVREGCY+CHSQMIRPLRDEVERYGH+SLAAESM+DHPFQWGSKRTGPDLAR+G KYS Sbjct: 61 NVYVREGCYLCHSQMIRPLRDEVERYGHFSLAAESMFDHPFQWGSKRTGPDLARVGAKYS 120 Query: 110 DEWHVTHLTNPRAIVPQSVMPGYPSLANTEVDLTDMVAHLRTNRAIGVPYSEDQIKNAVA 169 D+WHVTHLTNPRAIVPQSVMPGYP L+ TEVD + H+RT R +GVPY++DQI NA A Sbjct: 121 DDWHVTHLTNPRAIVPQSVMPGYPFLSATEVDPDTIADHMRTLRTVGVPYTDDQIANASA 180 Query: 170 DMKTQLDPDSANVESFQKRYPKAAVRNFDGRAGNPTELX-----LQMLGTLIDFKLYDEK 224 D+K Q DPD+A ++F KRY KA VRNFDG+ G PTE+ LQMLGTL+DFK+Y+EK Sbjct: 181 DLKAQADPDNAGADAFNKRYAKAVVRNFDGKTGTPTEMDALIAYLQMLGTLVDFKIYNEK 240 Query: 225 ANLR 228 ANLR Sbjct: 241 ANLR 244