BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0018.p         (231 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001242344.1| hypothetical protein BBta_6529 [Bradyrhizobi...   132   4e-29
ref|YP_001203627.1| hypothetical protein BRADO1501 [Bradyrhizobi...   124   1e-26
ref|YP_570792.1| hypothetical protein RPD_3668 [Rhodopseudomonas...   119   5e-25
ref|YP_487512.1| hypothetical protein RPB_3908 [Rhodopseudomonas...   117   1e-24
ref|YP_002290078.1| hypothetical protein OCAR_7107 [Oligotropha ...   108   5e-22

>ref|YP_001242344.1| hypothetical protein BBta_6529 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38438.1| hypothetical protein BBta_6529 [Bradyrhizobium sp. BTAi1]
          Length = 328

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 103/171 (60%), Gaps = 22/171 (12%)

Query: 2   MAYSEDHIALAAEYALGTLDAEERAQVETMMAVDSEFAALVQAWQFRLGPLNQMVGLVEP 61
           MAYSEDHIALAAEYALGTLDA ERAQVETMMAVDS+FAA+VQAW+FRL  LNQMVGLVEP
Sbjct: 1   MAYSEDHIALAAEYALGTLDAAERAQVETMMAVDSDFAAVVQAWEFRLSALNQMVGLVEP 60

Query: 62  RPVVWDNIKAAIGPTSAPQAPLVLPETP----------------ATTVTPPPI--TDDPE 103
           RP +W+ IKA I  T AP A  V P T                 A  +  PP+   D P 
Sbjct: 61  RPELWERIKAEIART-APVAQ-VSPTTAAVVAAPVAVDAPEPPGAIVLDAPPVLAADGPA 118

Query: 104 FGSAFDPEPAQSPEPRRLPEARPPRVIFDERNVTALTGRVKRWRGIASAAT 154
             +A D   + + +   L   R   V  D  NV  L+ +V++ R +A+  T
Sbjct: 119 VTAAED--GSATGKTTELKAERTEAVAADNTNVIQLSSKVRQLRIVANVMT 167


>ref|YP_001203627.1| hypothetical protein BRADO1501 [Bradyrhizobium sp. ORS 278]
 emb|CAL75390.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 374

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 62/73 (84%)

Query: 1  LMAYSEDHIALAAEYALGTLDAEERAQVETMMAVDSEFAALVQAWQFRLGPLNQMVGLVE 60
          +MAYSEDHIALAAEYALGTLDA ERAQVETMM  D  FAALVQ W+FRLG LNQMVGLVE
Sbjct: 1  MMAYSEDHIALAAEYALGTLDAVERAQVETMMTADQGFAALVQTWEFRLGSLNQMVGLVE 60

Query: 61 PRPVVWDNIKAAI 73
          PRP +W  IKA I
Sbjct: 61 PRPELWQRIKAEI 73


>ref|YP_570792.1| hypothetical protein RPD_3668 [Rhodopseudomonas palustris BisB5]
 gb|ABE40891.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 299

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 2/89 (2%)

Query: 2  MAYSEDHIALAAEYALGTLDAEERAQVETMMAVDSEFAALVQAWQFRLGPLNQMVGLVEP 61
          MAY+EDHIALAAEYALGTLDA+ERAQV+  M+ D+ +AALV+AW+ +LG LNQMVGLVEP
Sbjct: 1  MAYNEDHIALAAEYALGTLDADERAQVQATMSADANYAALVEAWELKLGALNQMVGLVEP 60

Query: 62 RPVVWDNIKAAIGPTSAPQAPLVLPETPA 90
           P VW+ IKAAIG  S  Q    LP TPA
Sbjct: 61 SPQVWERIKAAIG-MSGEQQAFALP-TPA 87


>ref|YP_487512.1| hypothetical protein RPB_3908 [Rhodopseudomonas palustris HaA2]
 gb|ABD08601.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 302

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 69/91 (75%), Gaps = 4/91 (4%)

Query: 2  MAYSEDHIALAAEYALGTLDAEERAQVETMMAVDSEFAALVQAWQFRLGPLNQMVGLVEP 61
          MA SEDHIALAAEYALGTLDA ERAQVE+MMA D+ +AALV AWQ +LG LNQMVG VEP
Sbjct: 1  MAISEDHIALAAEYALGTLDAGERAQVESMMAADAHYAALVDAWQIKLGALNQMVGFVEP 60

Query: 62 RPVVWDNIKAAIGPTSAPQAPLVLP---ETP 89
           P VW+ IKA+IG     QA   LP   ETP
Sbjct: 61 SPEVWERIKASIGMAGEQQA-FALPPAAETP 90


>ref|YP_002290078.1| hypothetical protein OCAR_7107 [Oligotropha carboxidovorans OM5]
 gb|ACI94213.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 351

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 2/93 (2%)

Query: 1  LMAYSEDHIALAAEYALGTLDAEERAQVETMMAVDSEFAALVQAWQFRLGPLNQMVGLVE 60
          +MAYSEDHIALAAEYALGTLDA+ERA VETMM VD  F A+V AW+ +L PL+QMV  VE
Sbjct: 1  MMAYSEDHIALAAEYALGTLDADERALVETMMIVDPGFLAIVHAWERKLAPLHQMVSPVE 60

Query: 61 PRPVVWDNIKAAIGPTSAPQAPLVLPETPATTV 93
          P  ++W+ I+ AI P   P AP+V  E+P   V
Sbjct: 61 PPGLLWERIRTAIPPREKPVAPVV--ESPVDAV 91