BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0016.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001203625.1| putative flagelar FliJ protein [Bradyrhizobi...   266   7e-70
ref|ZP_08631139.1| flagellar protein FliJ [Bradyrhizobiaceae bac...   254   3e-66
ref|YP_534074.1| flagellar export FliJ [Rhodopseudomonas palustr...   254   3e-66
ref|YP_783173.1| flagellar export FliJ [Rhodopseudomonas palustr...   253   8e-66
ref|NP_768842.1| hypothetical protein blr2202 [Bradyrhizobium ja...   252   1e-65

>ref|YP_001203625.1| putative flagelar FliJ protein [Bradyrhizobium sp. ORS 278]
 ref|YP_001242346.1| putative flagelar FliJ protein [Bradyrhizobium sp. BTAi1]
 emb|CAL75388.1| putative flagelar FliJ protein [Bradyrhizobium sp. ORS 278]
 gb|ABQ38440.1| putative flagelar FliJ protein [Bradyrhizobium sp. BTAi1]
          Length = 139

 Score =  266 bits (680), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 134/139 (96%), Positives = 137/139 (98%)

Query: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSVELEREIQTEQERAGINDPTHFAY 60
           MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMS ELEREIQTEQERAGINDPTHFAY
Sbjct: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSAELEREIQTEQERAGINDPTHFAY 60

Query: 61  PTYAKAAIQRRENLTRSADELRAQLDDAKALLSEAFEELKKVELLDERDQARERAEESAR 120
           PTYAKAAIQRRENLTRSADELRAQL+DAKA LSEAFEE+KKVELLDERDQARE+AEESAR
Sbjct: 61  PTYAKAAIQRRENLTRSADELRAQLEDAKAALSEAFEEMKKVELLDERDQAREKAEESAR 120

Query: 121 EQADMDSIGLMRARLGVIA 139
           EQADMDSIGLMRARLGVIA
Sbjct: 121 EQADMDSIGLMRARLGVIA 139


>ref|ZP_08631139.1| flagellar protein FliJ [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06240.1| flagellar protein FliJ [Bradyrhizobiaceae bacterium SG-6C]
          Length = 139

 Score =  254 bits (649), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/139 (91%), Positives = 134/139 (96%)

Query: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSVELEREIQTEQERAGINDPTHFAY 60
           MKSRETLIRLKKFQVDEKRRRV QIEGMIADFQRMSV+LEREIQ EQERAGINDPTHFAY
Sbjct: 1   MKSRETLIRLKKFQVDEKRRRVAQIEGMIADFQRMSVDLEREIQHEQERAGINDPTHFAY 60

Query: 61  PTYAKAAIQRRENLTRSADELRAQLDDAKALLSEAFEELKKVELLDERDQARERAEESAR 120
           PTYAKAAIQRRENLTRSADELR QL+DAKA+L EAFEELKKVELLDERDQARERAEESAR
Sbjct: 61  PTYAKAAIQRRENLTRSADELRVQLEDAKAVLGEAFEELKKVELLDERDQARERAEESAR 120

Query: 121 EQADMDSIGLMRARLGVIA 139
           EQAD+DSIGLMR+R+G +A
Sbjct: 121 EQADLDSIGLMRSRIGAMA 139


>ref|YP_534074.1| flagellar export FliJ [Rhodopseudomonas palustris BisB18]
 gb|ABD89755.1| Flagellar export FliJ [Rhodopseudomonas palustris BisB18]
          Length = 139

 Score =  254 bits (649), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/139 (90%), Positives = 136/139 (97%)

Query: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSVELEREIQTEQERAGINDPTHFAY 60
           MKSRETLIRLKKFQVDEKRRRV QIEGMIADFQRMSV+LEREIQ+EQERAGINDPTHFAY
Sbjct: 1   MKSRETLIRLKKFQVDEKRRRVAQIEGMIADFQRMSVDLEREIQSEQERAGINDPTHFAY 60

Query: 61  PTYAKAAIQRRENLTRSADELRAQLDDAKALLSEAFEELKKVELLDERDQARERAEESAR 120
           PTYAKAAIQRRENLTRSADELR QL+DA++ L+EAF+ELKKVELLDERDQARERAEESAR
Sbjct: 61  PTYAKAAIQRRENLTRSADELRIQLEDARSQLNEAFDELKKVELLDERDQARERAEESAR 120

Query: 121 EQADMDSIGLMRARLGVIA 139
           EQAD+DSIGLMRAR+GV+A
Sbjct: 121 EQADLDSIGLMRARIGVVA 139


>ref|YP_783173.1| flagellar export FliJ [Rhodopseudomonas palustris BisA53]
 gb|ABJ08193.1| flagellar export protein FliJ [Rhodopseudomonas palustris BisA53]
          Length = 139

 Score =  253 bits (645), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 127/139 (91%), Positives = 133/139 (95%)

Query: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSVELEREIQTEQERAGINDPTHFAY 60
           MKSRETLIRLKKFQVDEKRRRV QIEGMIADFQRMS EL+REIQTEQERAGINDP HFAY
Sbjct: 1   MKSRETLIRLKKFQVDEKRRRVAQIEGMIADFQRMSSELDREIQTEQERAGINDPAHFAY 60

Query: 61  PTYAKAAIQRRENLTRSADELRAQLDDAKALLSEAFEELKKVELLDERDQARERAEESAR 120
           PTYAKAAIQRRENLTRSADELR QLDDA++ L+EAF+ELKKVELLDERDQARERAEESAR
Sbjct: 61  PTYAKAAIQRRENLTRSADELRIQLDDARSHLNEAFDELKKVELLDERDQARERAEESAR 120

Query: 121 EQADMDSIGLMRARLGVIA 139
           EQAD+DSIGLMRARLG IA
Sbjct: 121 EQADLDSIGLMRARLGAIA 139


>ref|NP_768842.1| hypothetical protein blr2202 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47467.1| blr2202 [Bradyrhizobium japonicum USDA 110]
          Length = 139

 Score =  252 bits (644), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/139 (89%), Positives = 135/139 (97%)

Query: 1   MKSRETLIRLKKFQVDEKRRRVTQIEGMIADFQRMSVELEREIQTEQERAGINDPTHFAY 60
           MKSR+TLIRLKKFQVDEKRRRVTQIE MIADFQRMSV+LEREIQTEQERAGINDP+HFAY
Sbjct: 1   MKSRDTLIRLKKFQVDEKRRRVTQIETMIADFQRMSVDLEREIQTEQERAGINDPSHFAY 60

Query: 61  PTYAKAAIQRRENLTRSADELRAQLDDAKALLSEAFEELKKVELLDERDQARERAEESAR 120
           PTYAKAAIQRRENLTRSADEL+ QLD+AKA L+EAFEELKKVELLDERDQARERAEE+AR
Sbjct: 61  PTYAKAAIQRRENLTRSADELKGQLDEAKAALAEAFEELKKVELLDERDQARERAEENAR 120

Query: 121 EQADMDSIGLMRARLGVIA 139
           EQAD+DSIGLMRAR+G +A
Sbjct: 121 EQADLDSIGLMRARIGAVA 139