BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0181.0012.p         (233 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768840.1| two-component response regulator [Bradyrhizobiu...   466   e-130
ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [B...   465   e-129
ref|YP_001203623.1| two-component cell cycle transcriptional reg...   464   e-129
ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter...   464   e-129
ref|YP_578561.1| two component transcriptional regulator [Nitrob...   463   e-128

>ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/233 (99%), Positives = 232/233 (99%)

Query: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60
           MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120
           DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180
           GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEADERIPA 233
           GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHE +ERIPA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEHEERIPA 233


>ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
          Length = 233

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/233 (98%), Positives = 231/233 (99%)

Query: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60
           MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120
           DVLKQLRVSKIKTPILILSGLAGIEDKVKGLG GADDYMTKPFHKDEL+ARIHAIVRRSK
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180
           GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEADERIPA 233
           GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPH+ DERIPA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDMDERIPA 233


>ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS 278]
 emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS 278]
          Length = 233

 Score =  464 bits (1194), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/233 (98%), Positives = 231/233 (99%)

Query: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60
           MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120
           DVLKQLRVSKIKTPILILSGLAGIEDKVKGLG GADDYMTKPFHKDEL+ARIHAIVRRSK
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180
           GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEADERIPA 233
           GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPH+ DERIPA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDLDERIPA 233


>ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi
           Nb-255]
          Length = 233

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/233 (98%), Positives = 231/233 (99%)

Query: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60
           MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120
           DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180
           GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEADERIPA 233
           GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHE + RIPA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEDEVRIPA 233


>ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis
           X14]
          Length = 233

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/233 (98%), Positives = 231/233 (99%)

Query: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60
           MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120
           DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180
           GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEADERIPA 233
           GMDEPELKIIDVFICKLRKKLANAS+GRNFIETVWGRGYVLREPHE + RIPA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEDEARIPA 233