BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0077.p (474 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768172.1| chemotaxis protein [Bradyrhizobium japonicum US... 831 0.0 ref|YP_001203285.1| putative methyl-accepting chemotaxis protein... 748 0.0 ref|YP_001242705.1| methyl-accepting chemotaxis sensory transduc... 740 0.0 ref|ZP_07027160.1| methyl-accepting chemotaxis sensory transduce... 613 e-173 ref|YP_002289202.1| chemotaxis sensory transducer [Oligotropha c... 567 e-159 >ref|NP_768172.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46797.1| bll1532 [Bradyrhizobium japonicum USDA 110] Length = 474 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/473 (85%), Positives = 435/473 (91%) Query: 1 MSAAQLAVLDTSSDRTLAERLVDQLADRIGGLGVELADIAGNVQEVANRVSSQSERFHHL 60 MS AQLAVLDT S+RTLAERL+DQLADRIGGLGVELADIAGNVQEVANRV++QSERFHHL Sbjct: 1 MSLAQLAVLDTGSNRTLAERLIDQLADRIGGLGVELADIAGNVQEVANRVANQSERFHHL 60 Query: 61 QTTAETMVAANHDIANASQAVQTTASAAVGQIAESRHVVETAVSHIAELVAAVGRIEARL 120 Q TAETMV+ANHDIANASQAVQTT SAAVG+IA+SR V+TAVSHI+ELVAAVGRIEARL Sbjct: 61 QETAETMVSANHDIANASQAVQTTTSAAVGEIAQSRSAVDTAVSHISELVAAVGRIEARL 120 Query: 121 AAVGSALSQVAKVSGSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATR 180 +AVGSAL+QVAKVSGSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATR Sbjct: 121 SAVGSALAQVAKVSGSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATR 180 Query: 181 QATHQISDTVRDLDGQIGSLIGESSDASLRAKSAGEGAQQISGIIMRVQEGFSSVGAEIG 240 QATHQISDTVRDLDGQI LIGESSDAS RAK+AGEGAQQIS II RVQ+GF+SV AEI Sbjct: 181 QATHQISDTVRDLDGQIEGLIGESSDASQRAKTAGEGAQQISSIISRVQQGFASVEAEID 240 Query: 241 SVARAATSNLGHCDSVIAELNELAKGVDLSSRDLKHADSRVAKLLELSESLIVTIADSGV 300 SVARAATSNLGHCD+VI+ELNELAKGVDLSSRDLK+AD RVAKLL+ SE LI IADSGV Sbjct: 241 SVARAATSNLGHCDTVISELNELAKGVDLSSRDLKYADERVAKLLDTSEGLIAMIADSGV 300 Query: 301 ETSDTPLIRIVIDTARQISELFGTAVARGEITLAQLMDENYREIAGTNPKQYLTDYVAFT 360 ETSD PLIR V++TA++IS F A+ RGEITL QLMDE YREI GT+PKQYLT YV FT Sbjct: 301 ETSDAPLIRAVVETAKRISAEFEAAIDRGEITLDQLMDEKYREIPGTDPKQYLTSYVDFT 360 Query: 361 DRVLPAIQDPIQKSDPRIVFCVAWARSGYLPTHNPNYRQPQGPDPVWNNANCRNRRLFND 420 DRVLPAIQDPIQK+DPRIVFCVAWA+ GYLPTHNPNYR PQG DPVWNNANCRNRRLF D Sbjct: 361 DRVLPAIQDPIQKADPRIVFCVAWAKGGYLPTHNPNYRLPQGKDPVWNNANCRNRRLFTD 420 Query: 421 RAVSKVAANTKPFLLQTYRRDMGGGNFVLMKDLSSPIVVNGRHWGAFRMGFRQ 473 RAV KVAANTKPFLLQTYRRDMGGG FVLMKDLSSPI++ G+HWGAFRMGFR Sbjct: 421 RAVKKVAANTKPFLLQTYRRDMGGGQFVLMKDLSSPIMIRGKHWGAFRMGFRH 473 >ref|YP_001203285.1| putative methyl-accepting chemotaxis protein [Bradyrhizobium sp. ORS 278] emb|CAL75048.1| Putative methyl-accepting chemotaxis protein [Bradyrhizobium sp. ORS 278] Length = 476 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/475 (77%), Positives = 413/475 (86%), Gaps = 1/475 (0%) Query: 1 MSAAQLAVLDTSSDRTLAERLVDQLADRIGGLGVELADIAGNVQEVANRVSSQSERFHHL 60 MS AQ A+L++ R+ AERL+D++ADRIGGLGVELAD+AGNVQEVANRVS QS+RF HL Sbjct: 1 MSVAQRAILESHDARSGAERLIDEIADRIGGLGVELADVAGNVQEVANRVSYQSQRFGHL 60 Query: 61 QTTAETMVAANHDIANASQAVQTTASAAVGQIAESRHVVETAVSHIAELVAAVGRIEARL 120 Q TA+TMVAANHDIA ASQAVQ+ +AAVG IA+SR+VVETAV HI+ELV +V RIE RL Sbjct: 61 QATAKTMVAANHDIATASQAVQSATTAAVGDIAQSRNVVETAVRHISELVDSVERIEQRL 120 Query: 121 AAVGSALSQVAKVSGSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATR 180 +VG ALSQVAKVS +IEAIAKQTNLLALNATIEAARAG+AGRGFAVVASEVK+LAEATR Sbjct: 121 GSVGDALSQVAKVSVAIEAIAKQTNLLALNATIEAARAGSAGRGFAVVASEVKSLAEATR 180 Query: 181 QATHQISDTVRDLDGQIGSLIGESSDASLRAKSAGEGAQQISGIIMRVQEGFSSVGAEIG 240 QAT QI DT+R LD Q+ SL+GES AS RAK+AGEGAQQI GII+RVQ+GF+SVG EI Sbjct: 181 QATQQIGDTLRGLDSQVKSLLGESGQASSRAKTAGEGAQQIGGIIVRVQDGFTSVGQEID 240 Query: 241 SVARAATSNLGHCDSVIAELNELAKGVDLSSRDLKHADSRVAKLLELSESLIVTIADSGV 300 VA+AATSNL HCD+VI EL ELAKGVD SS +LK ADSR+AKLL+ SE+LI IA+SGV Sbjct: 241 GVAKAATSNLAHCDTVITELAELAKGVDQSSLELKQADSRIAKLLDHSEALIGLIAESGV 300 Query: 301 ETSDTPLIRIVIDTARQISELFGTAVARGEITLAQLMDENYREIAGTNPKQYLTDYVAFT 360 ET+D PLIR V+ TARQIS +F A+ RGEI LA L+DE+YREI GTNPKQYLT YV FT Sbjct: 301 ETADAPLIRTVVATARQISSVFEAAIDRGEIALADLLDESYREIPGTNPKQYLTRYVEFT 360 Query: 361 DRVLPAIQDPIQKSDPRIVFCVAWARSGYLPTHNPNYRQPQGPDPVWNNANCRNRRLFND 420 DRVLPAIQDPIQ SDPRIVFCVAWAR GYLPTHNPNYR+PQGPDPVWNNANCRNRRLF D Sbjct: 361 DRVLPAIQDPIQGSDPRIVFCVAWARGGYLPTHNPNYRKPQGPDPVWNNANCRNRRLFED 420 Query: 421 RAVSKV-AANTKPFLLQTYRRDMGGGNFVLMKDLSSPIVVNGRHWGAFRMGFRQS 474 RAV KV AA++KPFLLQTYRRDMGGG FVLMKDLS+PI + GRHWGAFRMGFR S Sbjct: 421 RAVKKVAAASSKPFLLQTYRRDMGGGQFVLMKDLSAPIFIKGRHWGAFRMGFRPS 475 >ref|YP_001242705.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp. BTAi1] gb|ABQ38799.1| methyl-accepting chemotaxis sensory transducer [Bradyrhizobium sp. BTAi1] Length = 475 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/475 (76%), Positives = 412/475 (86%), Gaps = 1/475 (0%) Query: 1 MSAAQLAVLDTSSDRTLAERLVDQLADRIGGLGVELADIAGNVQEVANRVSSQSERFHHL 60 MS AQ A+L++ R AERL+D++ADRIGGLGVELAD+AGNVQEVANR S QS+RF HL Sbjct: 1 MSVAQRAILESHDARWGAERLIDEIADRIGGLGVELADVAGNVQEVANRFSYQSQRFGHL 60 Query: 61 QTTAETMVAANHDIANASQAVQTTASAAVGQIAESRHVVETAVSHIAELVAAVGRIEARL 120 QTTA+TMVAANHDIA ASQAVQ+ SAAVG IA+SR VV+ AV HIAELV +V RIE RL Sbjct: 61 QTTAKTMVAANHDIATASQAVQSATSAAVGDIAQSRSVVDAAVRHIAELVDSVERIEQRL 120 Query: 121 AAVGSALSQVAKVSGSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATR 180 +VG ALSQVAKVS +IEAIAKQTNLLALNATIEAARAG+AGRGFAVVASEVK+LAEATR Sbjct: 121 GSVGDALSQVAKVSVAIEAIAKQTNLLALNATIEAARAGSAGRGFAVVASEVKSLAEATR 180 Query: 181 QATHQISDTVRDLDGQIGSLIGESSDASLRAKSAGEGAQQISGIIMRVQEGFSSVGAEIG 240 QAT QI DT+R LD Q+ +L+GES AS RAK+AGEGAQQI GII+RVQ+GF+SVG EI Sbjct: 181 QATQQIGDTLRGLDSQVKNLLGESGQASSRAKTAGEGAQQIGGIIVRVQDGFTSVGQEID 240 Query: 241 SVARAATSNLGHCDSVIAELNELAKGVDLSSRDLKHADSRVAKLLELSESLIVTIADSGV 300 VA+AATSNL HCD+VI+ELNELAKGVD SS +LK AD+R+AKLL+ SE+LI IA+SGV Sbjct: 241 GVAKAATSNLAHCDAVISELNELAKGVDQSSIELKQADARIAKLLDSSEALIGLIAESGV 300 Query: 301 ETSDTPLIRIVIDTARQISELFGTAVARGEITLAQLMDENYREIAGTNPKQYLTDYVAFT 360 +T+D PLI+ V++TA+QIS +F AV RGEI+LA LMDENYREI GTNPKQ++T YV FT Sbjct: 301 QTADAPLIKAVVETAKQISAVFEAAVDRGEISLADLMDENYREIPGTNPKQFMTRYVDFT 360 Query: 361 DRVLPAIQDPIQKSDPRIVFCVAWARSGYLPTHNPNYRQPQGPDPVWNNANCRNRRLFND 420 DRVLP IQDP+Q +DPRIVFCVAWAR GYLPTHNPNYR+PQGPDPVWNNANCRNRRLF D Sbjct: 361 DRVLPPIQDPLQSTDPRIVFCVAWARGGYLPTHNPNYRKPQGPDPVWNNANCRNRRLFED 420 Query: 421 RAVSKV-AANTKPFLLQTYRRDMGGGNFVLMKDLSSPIVVNGRHWGAFRMGFRQS 474 RAV KV AA+ KPFLLQTYRRDMGGG FVLMKDLS+PI + GRHWGAFRMGFR S Sbjct: 421 RAVKKVAAASNKPFLLQTYRRDMGGGQFVLMKDLSAPIFIKGRHWGAFRMGFRHS 475 >ref|ZP_07027160.1| methyl-accepting chemotaxis sensory transducer [Afipia sp. 1NLS2] gb|EFI52003.1| methyl-accepting chemotaxis sensory transducer [Afipia sp. 1NLS2] Length = 480 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 301/459 (65%), Positives = 362/459 (78%) Query: 16 TLAERLVDQLADRIGGLGVELADIAGNVQEVANRVSSQSERFHHLQTTAETMVAANHDIA 75 T++ERLVD+L + +G LGVELAD+ GN+ +VA+RVS QSE+F HLQ TA+TMVAAN +I Sbjct: 22 TVSERLVDELGNGLGNLGVELADVLGNLHDVASRVSRQSEQFGHLQETADTMVAANRNID 81 Query: 76 NASQAVQTTASAAVGQIAESRHVVETAVSHIAELVAAVGRIEARLAAVGSALSQVAKVSG 135 A++ VQ+ + A +I +SR VV +AV +I ELV AV RIE RLAA+ LSQV KVSG Sbjct: 82 GAARTVQSFTANAAAEITQSREVVTSAVGNITELVTAVSRIEDRLAAISQVLSQVGKVSG 141 Query: 136 SIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATRQATHQISDTVRDLDG 195 +IE IAKQTNLLALNATIEAARAG+AGRGFAVVA+EVK+LAEATRQAT QI TV++LDG Sbjct: 142 TIETIAKQTNLLALNATIEAARAGDAGRGFAVVANEVKSLAEATRQATLQIGQTVQNLDG 201 Query: 196 QIGSLIGESSDASLRAKSAGEGAQQISGIIMRVQEGFSSVGAEIGSVARAATSNLGHCDS 255 +IG LI +S A+ A+ AGEGA I G I RV EGF++V +I ++A AA +N+ HCD Sbjct: 202 EIGHLIEDSGVATRFAREAGEGANHIQGTINRVHEGFATVERDISAIAAAAATNMEHCDV 261 Query: 256 VIAELNELAKGVDLSSRDLKHADSRVAKLLELSESLIVTIADSGVETSDTPLIRIVIDTA 315 V+AEL +LAKGVDLSS DLKHAD RV LL SE+LI IA+SGVETSDTP I+ ++TA Sbjct: 262 VLAELGDLAKGVDLSSSDLKHADDRVEGLLGASETLIKAIAESGVETSDTPFIQAAVETA 321 Query: 316 RQISELFGTAVARGEITLAQLMDENYREIAGTNPKQYLTDYVAFTDRVLPAIQDPIQKSD 375 ++ + F A+ RGEIT Q + NYREI GTNPKQYL+ YV TDR+LP IQDP+QK D Sbjct: 322 AKVGKAFEAAIERGEITEQQFFEPNYREIEGTNPKQYLSSYVELTDRILPPIQDPVQKMD 381 Query: 376 PRIVFCVAWARSGYLPTHNPNYRQPQGPDPVWNNANCRNRRLFNDRAVSKVAANTKPFLL 435 PR++F VAWAR GYLPTHNPNYR PQG DPVWN ANCRNRR+F DRA KVA +T PFLL Sbjct: 382 PRVMFSVAWARDGYLPTHNPNYRHPQGDDPVWNAANCRNRRIFKDRAAEKVANSTAPFLL 441 Query: 436 QTYRRDMGGGNFVLMKDLSSPIVVNGRHWGAFRMGFRQS 474 QTYRRDMG GNFVL+KD S+PI + GRHWG FR+GFRQS Sbjct: 442 QTYRRDMGNGNFVLLKDASAPIRIRGRHWGCFRIGFRQS 480 >ref|YP_002289202.1| chemotaxis sensory transducer [Oligotropha carboxidovorans OM5] ref|YP_004632761.1| hypothetical protein OCA5_c18060 [Oligotropha carboxidovorans OM5] gb|ACI93337.1| chemotaxis sensory transducer [Oligotropha carboxidovorans OM5] gb|AEI02944.1| hypothetical protein OCA4_c18060 [Oligotropha carboxidovorans OM4] gb|AEI06520.1| hypothetical protein OCA5_c18060 [Oligotropha carboxidovorans OM5] Length = 471 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 284/460 (61%), Positives = 351/460 (76%) Query: 15 RTLAERLVDQLADRIGGLGVELADIAGNVQEVANRVSSQSERFHHLQTTAETMVAANHDI 74 R E+LVD+L + +G LGVELADI GN+ +VA+RVS QSE+F HLQ TA+TMVAAN +I Sbjct: 12 RIAPEKLVDELGNGLGNLGVELADILGNLHDVASRVSRQSEQFGHLQETADTMVAANRNI 71 Query: 75 ANASQAVQTTASAAVGQIAESRHVVETAVSHIAELVAAVGRIEARLAAVGSALSQVAKVS 134 A++ VQ+ + A +I +SR VV TAV HI +LV+AV RIE RL+A+ LSQV KVS Sbjct: 72 DGAARTVQSFTANAAAEITQSRDVVTTAVQHITDLVSAVSRIEDRLSAISQVLSQVGKVS 131 Query: 135 GSIEAIAKQTNLLALNATIEAARAGNAGRGFAVVASEVKNLAEATRQATHQISDTVRDLD 194 G+IE IAKQTNLLALNATIEAARAG+AGRGFAVVA+EVK+LAEATRQAT QI TV++LD Sbjct: 132 GTIENIAKQTNLLALNATIEAARAGDAGRGFAVVANEVKSLAEATRQATLQIGQTVQNLD 191 Query: 195 GQIGSLIGESSDASLRAKSAGEGAQQISGIIMRVQEGFSSVGAEIGSVARAATSNLGHCD 254 G++ LI +S A+ A+ AGEGA I G I RV EGF++V +I ++A AA +N+ HCD Sbjct: 192 GEVSHLIEDSGVATRYARQAGEGANHIQGTINRVHEGFATVERDITAIATAAAANMEHCD 251 Query: 255 SVIAELNELAKGVDLSSRDLKHADSRVAKLLELSESLIVTIADSGVETSDTPLIRIVIDT 314 V+AEL++LAKGVDLSS DLK AD RV LL SE+LI TIA+SGVETSDT +I +D Sbjct: 252 VVLAELSDLAKGVDLSSSDLKLADDRVEGLLGASEALIRTIAESGVETSDTVIITAAVDA 311 Query: 315 ARQISELFGTAVARGEITLAQLMDENYREIAGTNPKQYLTDYVAFTDRVLPAIQDPIQKS 374 A ++ E F A+ARGEIT AQ+ D YREI G+NP Q+ + Y+ D +LP IQDP+ K Sbjct: 312 AAKVGEAFEAAIARGEITEAQMFDRGYREIPGSNPAQHASAYLELADNILPPIQDPVLKV 371 Query: 375 DPRIVFCVAWARSGYLPTHNPNYRQPQGPDPVWNNANCRNRRLFNDRAVSKVAANTKPFL 434 DPR++F V++A GYLPTHNPNY PQG DPVWN ANCRNRR F DRA+ K A+ PFL Sbjct: 372 DPRVIFGVSFATDGYLPTHNPNYSHPQGDDPVWNAANCRNRRFFTDRAIEKATASNDPFL 431 Query: 435 LQTYRRDMGGGNFVLMKDLSSPIVVNGRHWGAFRMGFRQS 474 LQTYRRDMG G FVL+KD+S+PI + GR WG FR+GFRQ+ Sbjct: 432 LQTYRRDMGNGQFVLLKDVSAPIYIRGRRWGMFRIGFRQA 471