BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0060.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773810.1| hypothetical protein bll7170 [Bradyrhizobium ja... 702 0.0 ref|YP_001242690.1| RNA polymerase ECF-type sigma factor [Bradyr... 675 0.0 ref|YP_001203300.1| RNA polymerase ECF-type sigma factor [Bradyr... 674 0.0 ref|YP_487858.1| putative sigma factor [Rhodopseudomonas palustr... 655 0.0 ref|NP_104107.1| ECF subfamily RNA polymerase sigma-70 factor [M... 647 0.0 >ref|NP_773810.1| hypothetical protein bll7170 [Bradyrhizobium japonicum USDA 110] dbj|BAC52435.1| bll7170 [Bradyrhizobium japonicum USDA 110] Length = 433 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/418 (87%), Positives = 392/418 (93%) Query: 2 TDTAWIDAALTSARPQAVGALLRYFRNLDTAEEAFQNACLRALKSWPQNGPPRDPAAWLI 61 TDTAWI+ ALTSARPQAVGALLRYFR+LDTAEEAFQNACLRALK+WPQNGPPRDPAAWLI Sbjct: 4 TDTAWIETALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKTWPQNGPPRDPAAWLI 63 Query: 62 MVGRNVAIDEVRRNKKQQPLPDDDQAISDLDDAEDEIAERLDGSHYRDDILRLLFICCHK 121 MVGRNVAIDEVRR +KQQPLP+DDQAISDLDDAE +AERLDGSHYRDDILRL+FICCH Sbjct: 64 MVGRNVAIDEVRRARKQQPLPEDDQAISDLDDAEGALAERLDGSHYRDDILRLMFICCHP 123 Query: 122 DLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKARVADANVPFETPGAVER 181 LPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKA+VA+A PFETPG +ER Sbjct: 124 QLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKAKVAEAGTPFETPGPIER 183 Query: 182 SERLASVAAMIYLIFNEGYSASGDTAEIRAPLCEEAIRLARLLLRLFQSEPEIMGLTALL 241 SERLA VAAMIYLIFNEGYSASGDTAEIR PLCEEAIRLARLLLRLFQSEPEIMGL ALL Sbjct: 184 SERLAGVAAMIYLIFNEGYSASGDTAEIRKPLCEEAIRLARLLLRLFQSEPEIMGLAALL 243 Query: 242 LLQHARAEARFDADGQVILLDDQDRSLWNQKQIAEGLALIDKAMRHRRSGPYQVQAAIAA 301 LLQHAR+ ARF DG +ILL+DQDRSLWN IAEGLALIDKAMRHRRSGPYQ+QAAIAA Sbjct: 244 LLQHARSAARFADDGSLILLEDQDRSLWNGSMIAEGLALIDKAMRHRRSGPYQIQAAIAA 303 Query: 302 LHARAEKPEDTDWTQIDLLYGALEVMQPSPVITLNRAVAVSKVKGAQAALEMIEPLAPRL 361 LHARA PE+TDW QIDLLYGALE+ QPSPV+TLNRAVAVSKV+G QAAL++IEPLAP+L Sbjct: 304 LHARAATPEETDWAQIDLLYGALELAQPSPVVTLNRAVAVSKVRGPQAALDLIEPLAPKL 363 Query: 362 ANYFHYFGVRGAFLMQLGRNEEARIAFDRAIALANTTAEAAHIRMHIDRLMRDSQPRN 419 NYFH+ GVRGAFLMQLGRN+EARIAFDRAIALANT+AEAAHIRMHIDRL+RDSQP++ Sbjct: 364 GNYFHFHGVRGAFLMQLGRNDEARIAFDRAIALANTSAEAAHIRMHIDRLIRDSQPKS 421 >ref|YP_001242690.1| RNA polymerase ECF-type sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ38784.1| RNA polymerase ECF-type sigma factor [Bradyrhizobium sp. BTAi1] Length = 421 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/415 (84%), Positives = 386/415 (93%), Gaps = 1/415 (0%) Query: 1 VTDTAWIDAALTSARPQAVGALLRYFRNLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 +TD AWIDA LTSARPQAVGALLRYFR+LD AEEAFQNACLRALKSWPQNGPPRDPAAWL Sbjct: 1 MTDGAWIDATLTSARPQAVGALLRYFRDLDAAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 Query: 61 IMVGRNVAIDEVRRNKKQQPLPDDDQAISDLDDAEDEIAERLDGSHYRDDILRLLFICCH 120 IMVGRN ID+VRR +++QPLPDD +AISDLDDAE +A+RLDGSHYRDDILRLLFICCH Sbjct: 61 IMVGRNAGIDDVRRVRREQPLPDD-EAISDLDDAESALADRLDGSHYRDDILRLLFICCH 119 Query: 121 KDLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKARVADANVPFETPGAVE 180 K+LPATQQIALALR+VSGLTVKQIARAFLVSEAAMEQRITRAKARVA A+VPFETPGAVE Sbjct: 120 KELPATQQIALALRVVSGLTVKQIARAFLVSEAAMEQRITRAKARVAQADVPFETPGAVE 179 Query: 181 RSERLASVAAMIYLIFNEGYSASGDTAEIRAPLCEEAIRLARLLLRLFQSEPEIMGLTAL 240 R+ERL +VAAMIYLIFNEGYSASG+ AE+R PL EEAIRLARLLLRLF EPEIMGL AL Sbjct: 180 RAERLVAVAAMIYLIFNEGYSASGEAAELRQPLSEEAIRLARLLLRLFPGEPEIMGLMAL 239 Query: 241 LLLQHARAEARFDADGQVILLDDQDRSLWNQKQIAEGLALIDKAMRHRRSGPYQVQAAIA 300 LLLQHAR+ ARFDA+G ILL+DQDR+LWNQ IAEGLALIDKA+RHRRSGPYQ+QAAIA Sbjct: 240 LLLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAIRHRRSGPYQIQAAIA 299 Query: 301 ALHARAEKPEDTDWTQIDLLYGALEVMQPSPVITLNRAVAVSKVKGAQAALEMIEPLAPR 360 ALHARA +PEDTDWTQIDLLYGALEV+QPSPV+TLNRAVAVSKV+GAQAAL++I PL R Sbjct: 300 ALHARAIRPEDTDWTQIDLLYGALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLETR 359 Query: 361 LANYFHYFGVRGAFLMQLGRNEEARIAFDRAIALANTTAEAAHIRMHIDRLMRDS 415 LANYF++FGVRGA LMQLGRN+EAR AFDRAIALA+++AEAAHIRM +DRLMRDS Sbjct: 360 LANYFYFFGVRGALLMQLGRNDEARTAFDRAIALAHSSAEAAHIRMQLDRLMRDS 414 >ref|YP_001203300.1| RNA polymerase ECF-type sigma factor [Bradyrhizobium sp. ORS 278] emb|CAL75063.1| RNA polymerase ECF-type sigma factor [Bradyrhizobium sp. ORS 278] Length = 423 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/415 (84%), Positives = 388/415 (93%), Gaps = 1/415 (0%) Query: 1 VTDTAWIDAALTSARPQAVGALLRYFRNLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 +TD AWIDAALTSARPQAVGALLRYFR+LDTAEEAFQNACLRALKSWPQNGPPRDPAAWL Sbjct: 1 MTDVAWIDAALTSARPQAVGALLRYFRDLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 Query: 61 IMVGRNVAIDEVRRNKKQQPLPDDDQAISDLDDAEDEIAERLDGSHYRDDILRLLFICCH 120 IMVGRN AID+VRR++++QPLP+D +AISDL DAE + +RLDGSHYRDDILRLLFICCH Sbjct: 61 IMVGRNAAIDDVRRSRREQPLPED-EAISDLGDAESAVVDRLDGSHYRDDILRLLFICCH 119 Query: 121 KDLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKARVADANVPFETPGAVE 180 K+LPATQQIALALR+VSGLTVKQIARAFLVS+AAMEQRITRAKARVA ANVPFETPGAVE Sbjct: 120 KELPATQQIALALRVVSGLTVKQIARAFLVSDAAMEQRITRAKARVAQANVPFETPGAVE 179 Query: 181 RSERLASVAAMIYLIFNEGYSASGDTAEIRAPLCEEAIRLARLLLRLFQSEPEIMGLTAL 240 R+ERL +VAAMIYLIFNEGYS+SG+TA +R L EEAIRLARLLLRLF EPEIMGLTAL Sbjct: 180 RAERLTAVAAMIYLIFNEGYSSSGETAALRRKLSEEAIRLARLLLRLFPGEPEIMGLTAL 239 Query: 241 LLLQHARAEARFDADGQVILLDDQDRSLWNQKQIAEGLALIDKAMRHRRSGPYQVQAAIA 300 LLLQHAR+ ARFDA+G ILL+DQDR+LWNQ IAEGLALIDKAMRHRRSGPYQ+QAAIA Sbjct: 240 LLLQHARSAARFDAEGLPILLEDQDRTLWNQPMIAEGLALIDKAMRHRRSGPYQIQAAIA 299 Query: 301 ALHARAEKPEDTDWTQIDLLYGALEVMQPSPVITLNRAVAVSKVKGAQAALEMIEPLAPR 360 ALHARA +PE+TDWTQIDLLYGALEV+QPSPV+TLNRAVAVSKV+GAQAAL++I PL R Sbjct: 300 ALHARAARPEETDWTQIDLLYGALEVVQPSPVVTLNRAVAVSKVRGAQAALDLIAPLEGR 359 Query: 361 LANYFHYFGVRGAFLMQLGRNEEARIAFDRAIALANTTAEAAHIRMHIDRLMRDS 415 LANYF++FGVRGA LMQLGR++EAR AFDRAIALA+++AEAAHIRM +DRLMRDS Sbjct: 360 LANYFYFFGVRGALLMQLGRHDEARAAFDRAIALAHSSAEAAHIRMQLDRLMRDS 414 >ref|YP_487858.1| putative sigma factor [Rhodopseudomonas palustris HaA2] gb|ABD08947.1| putative sigma factor [Rhodopseudomonas palustris HaA2] Length = 421 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/414 (83%), Positives = 379/414 (91%), Gaps = 1/414 (0%) Query: 1 VTDTAWIDAALTSARPQAVGALLRYFRNLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 +TD AWID A+T++RPQA+GALLRYFR+LDTAEEAFQNACLRALK+WPQNGPPRDPAAWL Sbjct: 1 MTDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQNGPPRDPAAWL 60 Query: 61 IMVGRNVAIDEVRRNKKQQPLPDDDQAISDLDDAEDEIAERLDGSHYRDDILRLLFICCH 120 I+VGRNVAID++RR KKQQPLPDD +AISDLDDAE +AERLDGSHYRDDILRLLFICCH Sbjct: 61 ILVGRNVAIDDLRRGKKQQPLPDD-EAISDLDDAESALAERLDGSHYRDDILRLLFICCH 119 Query: 121 KDLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKARVADANVPFETPGAVE 180 +LP TQQIALALRIVSGLTV QIARAFLVS+AAMEQRITRAKA+VA A VPFETPGA E Sbjct: 120 PELPPTQQIALALRIVSGLTVPQIARAFLVSDAAMEQRITRAKAKVARARVPFETPGAPE 179 Query: 181 RSERLASVAAMIYLIFNEGYSASGDTAEIRAPLCEEAIRLARLLLRLFQSEPEIMGLTAL 240 RSERL +VAAMIYL+FNEGYSASGDTA IRAPLCEEAIRLARLLLRLF SEPEIMGLTAL Sbjct: 180 RSERLGAVAAMIYLVFNEGYSASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTAL 239 Query: 241 LLLQHARAEARFDADGQVILLDDQDRSLWNQKQIAEGLALIDKAMRHRRSGPYQVQAAIA 300 +LLQHARA ARFDA G+++LLD+QDR LW+ K IAEGLALIDKAMRHRR+G YQ+QAAIA Sbjct: 240 MLLQHARAPARFDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIA 299 Query: 301 ALHARAEKPEDTDWTQIDLLYGALEVMQPSPVITLNRAVAVSKVKGAQAALEMIEPLAPR 360 ALHARA +PEDTDW QIDLLYG+LE++QPSPVITLNRAVAVSKV+GA+AAL MI PL R Sbjct: 300 ALHARATRPEDTDWAQIDLLYGSLEILQPSPVITLNRAVAVSKVRGAEAALAMIAPLEER 359 Query: 361 LANYFHYFGVRGAFLMQLGRNEEARIAFDRAIALANTTAEAAHIRMHIDRLMRD 414 L+NYFHYFG RGA L+QLGR +EAR AFDRAIALA TTAEA HIRMH+DR RD Sbjct: 360 LSNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEANHIRMHLDRSKRD 413 >ref|NP_104107.1| ECF subfamily RNA polymerase sigma-70 factor [Mesorhizobium loti MAFF303099] dbj|BAB49893.1| probable sigma-70 factor, ECF subfamily [Mesorhizobium loti MAFF303099] Length = 424 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/418 (78%), Positives = 374/418 (89%), Gaps = 1/418 (0%) Query: 1 VTDTAWIDAALTSARPQAVGALLRYFRNLDTAEEAFQNACLRALKSWPQNGPPRDPAAWL 60 +T+ AWI +A+++ARPQA+GALLRYFR+LDTAEEAFQ+ACLRALK+WPQNGPPRDPAAWL Sbjct: 1 MTELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWL 60 Query: 61 IMVGRNVAIDEVRRNKKQQPLPDDDQAISDLDDAEDEIAERLDGSHYRDDILRLLFICCH 120 I VGRN ID VR+ KQ P+P++DQ ISDL+DAE +IAERLDG+HYRDDILRLLFICCH Sbjct: 61 IFVGRNSGIDAVRKRAKQAPMPEEDQ-ISDLEDAESDIAERLDGAHYRDDILRLLFICCH 119 Query: 121 KDLPATQQIALALRIVSGLTVKQIARAFLVSEAAMEQRITRAKARVADANVPFETPGAVE 180 DLPATQQIA+ALRIVSGL+VKQIARAFLV E+AMEQRITRAKAR+ADA VPFETPGAVE Sbjct: 120 PDLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITRAKARIADAGVPFETPGAVE 179 Query: 181 RSERLASVAAMIYLIFNEGYSASGDTAEIRAPLCEEAIRLARLLLRLFQSEPEIMGLTAL 240 RSERLA+VAAM+YLIFNEGYS + A RAPLCEEAIRLARLLLRLFQ+EPEIMGLTAL Sbjct: 180 RSERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTAL 239 Query: 241 LLLQHARAEARFDADGQVILLDDQDRSLWNQKQIAEGLALIDKAMRHRRSGPYQVQAAIA 300 LLLQHARA ARFD DG+++LL+DQDR LW++K I EGLAL+DKA+RHR+ GPYQVQAAIA Sbjct: 240 LLLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIA 299 Query: 301 ALHARAEKPEDTDWTQIDLLYGALEVMQPSPVITLNRAVAVSKVKGAQAALEMIEPLAPR 360 ALHARAEK EDTDW +IDLLYG LE MQPSPVITLNRAVAVSK++G +AAL MIEPL R Sbjct: 300 ALHARAEKAEDTDWVEIDLLYGLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEER 359 Query: 361 LANYFHYFGVRGAFLMQLGRNEEARIAFDRAIALANTTAEAAHIRMHIDRLMRDSQPR 418 L+ YFH+FG++G LMQL R EEAR+AFDRAIALANT EAAHIRMHIDRLM+D R Sbjct: 360 LSGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEAAHIRMHIDRLMKDGAVR 417