BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0042.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771079.1| penicillin binding protein [Bradyrhizobium japo... 648 0.0 ref|YP_001991808.1| penicillin-binding protein 1C [Rhodopseudomo... 647 0.0 ref|YP_486531.1| penicillin-binding protein 1C [Rhodopseudomonas... 642 0.0 ref|YP_577334.1| penicillin-binding protein 1C [Nitrobacter hamb... 637 e-180 ref|YP_569683.1| penicillin-binding protein 1C [Rhodopseudomonas... 637 e-180 >ref|NP_771079.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49704.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110] Length = 733 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/396 (82%), Positives = 361/396 (91%) Query: 1 MVRAVELERQLSKDQILDLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAEAALLVALP 60 MVRA+E+ER L K +ILDLYLALAP+GGNLEGIRAASIAY GKEPKRLSLAEAALLVALP Sbjct: 185 MVRAIEIERTLGKSEILDLYLALAPYGGNLEGIRAASIAYLGKEPKRLSLAEAALLVALP 244 Query: 61 QSPERRRLDRYPDAAHAARDRVLERMVEDGVVSKDDAAQATATAVPKMRKQIPILAPHSS 120 QSPE RRLDRYPDAA ARDRVL+RMVE+ VVS DDA QA A VPK+RK +P+LAPH+S Sbjct: 245 QSPETRRLDRYPDAALKARDRVLDRMVEEHVVSVDDAKQAKAVPVPKLRKPMPVLAPHAS 304 Query: 121 DQAIATMKDTPVIKLTLDATLQRNLEALARDRAIAQGPDVSVAIVVVDNETGDVLARVGS 180 D A+AT+KD PVIKLTLDA LQ+ LE LARDRA+A G ++SV I+VVDNE+GDVLARVGS Sbjct: 305 DTALATVKDAPVIKLTLDANLQKVLEPLARDRAVALGANISVGIIVVDNESGDVLARVGS 364 Query: 181 ADYFDERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIEDRPIRFGTYAPENF 240 ADYFDE RAGQVDMTRA+RSPGSTLKPFIYGLAFEDGFVHPDSLI+DRP+RFG+YAPENF Sbjct: 365 ADYFDESRAGQVDMTRAIRSPGSTLKPFIYGLAFEDGFVHPDSLIDDRPVRFGSYAPENF 424 Query: 241 DMTFQGTVPIRKALQLSLNVPAIALLDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLG 300 DMTFQGTVP++KALQLSLNVPAI LLDRVGASRL+SRL+QAG +L+LPKDEAPGLAMGLG Sbjct: 425 DMTFQGTVPVKKALQLSLNVPAIVLLDRVGASRLASRLRQAGGNLILPKDEAPGLAMGLG 484 Query: 301 GVGVTLQDLAQLYSGLARLGATKPLREIVQADDGRDTMRLMDQAAAWQVGNVLLGTPPPE 360 GVGVTLQDLAQLY+G ARLG TKPLRE+V A D R+ +RL+DQ AAWQVGNVLLGTPPPE Sbjct: 485 GVGVTLQDLAQLYAGFARLGTTKPLREVVAARDDREPLRLLDQVAAWQVGNVLLGTPPPE 544 Query: 361 NGVHNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWGG 396 N HNRIAFKTGTSYGYRDAWSVGFDGR+TIGVW G Sbjct: 545 NAAHNRIAFKTGTSYGYRDAWSVGFDGRMTIGVWVG 580 >ref|YP_001991808.1| penicillin-binding protein 1C [Rhodopseudomonas palustris TIE-1] gb|ACF01333.1| penicillin-binding protein 1C [Rhodopseudomonas palustris TIE-1] Length = 680 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/397 (80%), Positives = 354/397 (89%), Gaps = 1/397 (0%) Query: 1 MVRAVELERQLSKDQILDLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAEAALLVALP 60 MVRAVELE +LSK QILDLYLALAP+GGNLEGIRAASIAYFGKEPKRL+LAE+ALLVALP Sbjct: 133 MVRAVELEHRLSKQQILDLYLALAPYGGNLEGIRAASIAYFGKEPKRLTLAESALLVALP 192 Query: 61 QSPERRRLDRYPDAAHAARDRVLERMVEDGVVSKDDAAQATATAVPKMRKQIPILAPHSS 120 QSPE RRLDR+PD A ARDRVL RMVEDGVVS +DAAQA A V + RK +PILAPHS+ Sbjct: 193 QSPEHRRLDRHPDVAREARDRVLARMVEDGVVSAEDAAQARAVPVLRQRKPMPILAPHSA 252 Query: 121 DQAIATMKDTPVIKLTLDATLQRNLEALARDRAIAQGPDVSVAIVVVDNETGDVLARVGS 180 DQA+A KD P+I+LTLDA LQR LE LARDRA A GPD+S+ +V VDN +G+VLA VGS Sbjct: 253 DQAVAADKDAPLIRLTLDAGLQRALETLARDRAAALGPDISIGLVAVDNASGEVLAHVGS 312 Query: 181 ADYFDERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIEDRPIRFGTYAPENF 240 ADYFD+RRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHP+SLI+DRP+RFG YAPENF Sbjct: 313 ADYFDDRRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPESLIDDRPVRFGAYAPENF 372 Query: 241 DMTFQGTVPIRKALQLSLNVPAIALLDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLG 300 DMTFQGTVP+RKALQLSLNVPAI LLDRVGA+RL+SRLKQAGT LVLP+DEAPGLAMGLG Sbjct: 373 DMTFQGTVPVRKALQLSLNVPAIELLDRVGAARLASRLKQAGTELVLPRDEAPGLAMGLG 432 Query: 301 GVGVTLQDLAQLYSGLARLGATKPLREIV-QADDGRDTMRLMDQAAAWQVGNVLLGTPPP 359 GVG+ L DL QLYSGL RLG+ PLREI ++D R+T+RLMDQ AAWQVG+VLLGTPPP Sbjct: 433 GVGIKLIDLVQLYSGLPRLGSVLPLREIASSSNDKRETLRLMDQVAAWQVGSVLLGTPPP 492 Query: 360 ENGVHNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWGG 396 EN V N+IAFKTGTSYGYRDAWSVGFDGR+TIGVW G Sbjct: 493 ENAVRNQIAFKTGTSYGYRDAWSVGFDGRMTIGVWVG 529 >ref|YP_486531.1| penicillin-binding protein 1C [Rhodopseudomonas palustris HaA2] gb|ABD07620.1| Penicillin-binding protein 1C [Rhodopseudomonas palustris HaA2] Length = 731 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/397 (79%), Positives = 352/397 (88%), Gaps = 1/397 (0%) Query: 1 MVRAVELERQLSKDQILDLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAEAALLVALP 60 MVRA+ELER LSK QILDLYLALAP+GGNLEGIRAASIAYFGKEPKRL+LAE+ALLVA+P Sbjct: 184 MVRAIELERTLSKPQILDLYLALAPYGGNLEGIRAASIAYFGKEPKRLTLAESALLVAIP 243 Query: 61 QSPERRRLDRYPDAAHAARDRVLERMVEDGVVSKDDAAQATATAVPKMRKQIPILAPHSS 120 QSPERRRLDR+P A AARDRVL R+VED VVS +DAAQA A V + RK +P+LAPHS+ Sbjct: 244 QSPERRRLDRHPATAQAARDRVLTRLVEDQVVSTEDAAQARAVPVARARKPMPVLAPHSA 303 Query: 121 DQAIATMKDTPVIKLTLDATLQRNLEALARDRAIAQGPDVSVAIVVVDNETGDVLARVGS 180 DQA A +KD PVI+LTLDA +Q LEALARDRA+A GPD+S+ IV VDNETGDVLA VGS Sbjct: 304 DQATAVIKDKPVIRLTLDAGIQHALEALARDRAVALGPDISIGIVAVDNETGDVLAHVGS 363 Query: 181 ADYFDERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIEDRPIRFGTYAPENF 240 ADYFD+RRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHP+SLI+DRP+R+G YAPENF Sbjct: 364 ADYFDDRRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPESLIDDRPVRYGAYAPENF 423 Query: 241 DMTFQGTVPIRKALQLSLNVPAIALLDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLG 300 DMTFQGTVP+RKALQLSLNVPAI LLDRVG RL+SRLKQAG LVLPKDEAPGLAMGLG Sbjct: 424 DMTFQGTVPVRKALQLSLNVPAIELLDRVGPHRLASRLKQAGVGLVLPKDEAPGLAMGLG 483 Query: 301 GVGVTLQDLAQLYSGLARLGATKPLREIVQ-ADDGRDTMRLMDQAAAWQVGNVLLGTPPP 359 GVGV L DL QL+SG+ARLG+ PLREI A D R+T+RL+D+ AAWQVGNVLLGTPPP Sbjct: 484 GVGVRLTDLVQLFSGVARLGSVVPLREIASDAKDERETLRLLDKVAAWQVGNVLLGTPPP 543 Query: 360 ENGVHNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWGG 396 +N N+IAFKTGTSYGYRDAWSVGFDGR+TIGVW G Sbjct: 544 DNAARNQIAFKTGTSYGYRDAWSVGFDGRMTIGVWVG 580 >ref|YP_577334.1| penicillin-binding protein 1C [Nitrobacter hamburgensis X14] gb|ABE62874.1| Penicillin-binding protein 1C [Nitrobacter hamburgensis X14] Length = 706 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 317/397 (79%), Positives = 353/397 (88%), Gaps = 1/397 (0%) Query: 1 MVRAVELERQLSKDQILDLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAEAALLVALP 60 +VRA +LE +LSKD+IL+LYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAE+ALLVALP Sbjct: 157 VVRAFQLEHELSKDEILNLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAESALLVALP 216 Query: 61 QSPERRRLDRYPDAAHAARDRVLERMVEDGVVSKDDAAQATATAVPKMRKQIPILAPHSS 120 QSPERRRLDR+P AA AARDRVLERMVE+ +S +DAAQA A V +MRK P+LAPHS+ Sbjct: 217 QSPERRRLDRHPTAARAARDRVLERMVEESRISAEDAAQAKAVPVMRMRKPFPMLAPHSA 276 Query: 121 DQAIATMKDTPVIKLTLDATLQRNLEALARDRAIAQGPDVSVAIVVVDNETGDVLARVGS 180 D+A+AT++D+ VI+LTL++ LQR LEALARDRA A GPD+S+ I+ VDN TGDVLA VGS Sbjct: 277 DRALATVRDSSVIRLTLESGLQRTLEALARDRAGALGPDISIGIIAVDNATGDVLAHVGS 336 Query: 181 ADYFDERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIEDRPIRFGTYAPENF 240 ADYF+ERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLI+DRP+RFG+YAPENF Sbjct: 337 ADYFNERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIDDRPVRFGSYAPENF 396 Query: 241 DMTFQGTVPIRKALQLSLNVPAIALLDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLG 300 DMTFQGTV +R+ALQLSLNVPAI LLDRVGASRLSSRLKQAG LVLPKDEAPGLAMGLG Sbjct: 397 DMTFQGTVAVRRALQLSLNVPAIELLDRVGASRLSSRLKQAGADLVLPKDEAPGLAMGLG 456 Query: 301 GVGVTLQDLAQLYSGLARLGATKPLREIVQADDG-RDTMRLMDQAAAWQVGNVLLGTPPP 359 GVGVTL DL Q YSG+ RLG+ PLREI + R+ +RL+D AAWQVGNVLLGTPPP Sbjct: 457 GVGVTLHDLVQAYSGIPRLGSVMPLREIERGGGSVREPLRLLDPVAAWQVGNVLLGTPPP 516 Query: 360 ENGVHNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWGG 396 EN V NRIAFKTGTSYGYRDAWSVGFDGRVTIGVW G Sbjct: 517 ENAVRNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWVG 553 >ref|YP_569683.1| penicillin-binding protein 1C [Rhodopseudomonas palustris BisB5] gb|ABE39782.1| Penicillin-binding protein 1C [Rhodopseudomonas palustris BisB5] Length = 750 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 319/397 (80%), Positives = 357/397 (89%), Gaps = 1/397 (0%) Query: 1 MVRAVELERQLSKDQILDLYLALAPFGGNLEGIRAASIAYFGKEPKRLSLAEAALLVALP 60 MVRAVELER+L K QILDLYLALAP+GGNLEG+RAASIAYFGKEPKRL+LAE+ALLVALP Sbjct: 203 MVRAVELERKLGKHQILDLYLALAPYGGNLEGVRAASIAYFGKEPKRLTLAESALLVALP 262 Query: 61 QSPERRRLDRYPDAAHAARDRVLERMVEDGVVSKDDAAQATATAVPKMRKQIPILAPHSS 120 QSPE RRLDR+PDAA AARDRVL RMVEDGVVS +DAAQA A V + RK +P+LAPHS+ Sbjct: 263 QSPETRRLDRHPDAARAARDRVLARMVEDGVVSAEDAAQARAAPVLRQRKPMPVLAPHSA 322 Query: 121 DQAIATMKDTPVIKLTLDATLQRNLEALARDRAIAQGPDVSVAIVVVDNETGDVLARVGS 180 DQA A++KD PVI+LTLDA QR LEALARDRA A GPD+S+ IV VDN++GDVLA VGS Sbjct: 323 DQAAASVKDAPVIRLTLDAGTQRALEALARDRATALGPDISIGIVAVDNDSGDVLAHVGS 382 Query: 181 ADYFDERRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPDSLIEDRPIRFGTYAPENF 240 ADYFD+RRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHP+SLI+DRP+RFG YAPENF Sbjct: 383 ADYFDDRRAGQVDMTRAVRSPGSTLKPFIYGLAFEDGFVHPESLIDDRPVRFGAYAPENF 442 Query: 241 DMTFQGTVPIRKALQLSLNVPAIALLDRVGASRLSSRLKQAGTSLVLPKDEAPGLAMGLG 300 DMTFQGTV +RKALQLSLNVPAI LLDRVG+SRL+SRLKQAG SLVLPKDEAPGLAMGLG Sbjct: 443 DMTFQGTVTVRKALQLSLNVPAIELLDRVGSSRLASRLKQAGASLVLPKDEAPGLAMGLG 502 Query: 301 GVGVTLQDLAQLYSGLARLGATKPLREIVQADDG-RDTMRLMDQAAAWQVGNVLLGTPPP 359 GVGV L DL QLYSG+ARLG+ PLREI ++G R+T+RL+D+ AAWQ+GNVL+GTPPP Sbjct: 503 GVGVRLIDLVQLYSGVARLGSVAPLREIASKNNGERETLRLLDKVAAWQIGNVLIGTPPP 562 Query: 360 ENGVHNRIAFKTGTSYGYRDAWSVGFDGRVTIGVWGG 396 EN N+IAFKTGTSYGYRDAWSVGFDG++TIGVW G Sbjct: 563 ENAARNQIAFKTGTSYGYRDAWSVGFDGKITIGVWVG 599