BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0028.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771315.1| hypothetical protein blr4675 [Bradyrhizobium ja...   133   9e-30
ref|YP_003399511.1| TPR repeat-containing protein [Acidaminococc...    39   0.35 
ref|ZP_06861205.1| hypothetical protein CbatJ_06281 [Citromicrob...    35   4.5  

>ref|NP_771315.1| hypothetical protein blr4675 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49940.1| blr4675 [Bradyrhizobium japonicum USDA 110]
          Length = 100

 Score =  133 bits (335), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 80/100 (80%)

Query: 1   MRNLNTVLSKLNDRLLRLEGELFVLRSIARAALTAGDESAVRTRKLLEGAKLALSDEAER 60
           M +LN VL++LNDRLLRLEGELFVLRS+ARA LTAGD+ A R RKL+E AK+AL DEA+R
Sbjct: 1   MADLNAVLTRLNDRLLRLEGELFVLRSLARATLTAGDDHAARMRKLVEAAKVALDDEAKR 60

Query: 61  PLDAATGKYVAAAIAMVEELLENPREAAPLFRVIDGGRRD 100
            LD  T KYV AA A+VEELL  P  A PLF VIDGGRRD
Sbjct: 61  ELDKPTRKYVDAATALVEELLVEPTPARPLFTVIDGGRRD 100


>ref|YP_003399511.1| TPR repeat-containing protein [Acidaminococcus fermentans DSM
           20731]
 gb|ADB48196.1| TPR repeat-containing protein [Acidaminococcus fermentans DSM
           20731]
          Length = 719

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 6   TVLSKLNDRLLR-LEGELFVLRSIARAALTAG--DESAVRTRKLLEGAKLALSDEAERPL 62
           TV   L DRLL   EG LF+LR   +A  T G  D      R + +    AL+D+ ++ L
Sbjct: 181 TVDEHLVDRLLEESEGNLFLLRECLKALQTTGSLDNLTENMRNIFKSNCFALTDDQQKIL 240

Query: 63  DAATGKYVAAAIAMVEELL 81
           D  +  Y  A +AM+ E +
Sbjct: 241 DFISLFYDGAPLAMISEYM 259


>ref|ZP_06861205.1| hypothetical protein CbatJ_06281 [Citromicrobium bathyomarinum
           JL354]
          Length = 304

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 31  AALTAGDESAVR---TRKLLE--GAKLALSDEAERPLDAATGKYVAAAIAMVEELLENPR 85
            ++T  D SA     TR  LE  G +  ++ EA   +DA +GK+ +   + V E LE PR
Sbjct: 163 GSVTGWDVSATSLRDTRHALEAMGVQKPVTLEAHNIVDAPSGKFDSLTFSEVLEHLEQPR 222

Query: 86  EAAPLFRVI--DGGR 98
           +A    R +  DGG+
Sbjct: 223 DALKTLRALLNDGGK 237