BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0016.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771070.1| hypothetical protein bll4430 [Bradyrhizobium ja... 610 e-173 ref|YP_532399.1| twin-arginine translocation pathway signal [Rho... 596 e-168 ref|YP_001240024.1| putative TRAP-type C4-dicarboxylate transpor... 582 e-164 ref|YP_001205684.1| putative TRAP-type C4-dicarboxylate transpor... 580 e-163 ref|YP_001991797.1| TRAP dicarboxylate transporter subunit DctP ... 565 e-159 >ref|NP_771070.1| hypothetical protein bll4430 [Bradyrhizobium japonicum USDA 110] dbj|BAC49695.1| bll4430 [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 610 bits (1574), Expect = e-173, Method: Compositional matrix adjust. Identities = 291/321 (90%), Positives = 309/321 (96%) Query: 1 MGIGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSGGELTAEVYPNSSLIK 60 G GTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRS G++ AE+YPNSSLIK Sbjct: 20 FGTGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSNGDIAAEIYPNSSLIK 79 Query: 61 TNAQFSAMRKGALDLSLYPMPYAGGELPETNIGLMPGLVTTYDQGLRWKKEPVGKALTDF 120 TNAQFSAMRKGALD+SLYPMPYAGGELPETNIGLMPGLVTTYDQG+RWKKEPVGKAL+DF Sbjct: 80 TNAQFSAMRKGALDISLYPMPYAGGELPETNIGLMPGLVTTYDQGMRWKKEPVGKALSDF 139 Query: 121 LADKGILLISWVWQAGGVASRSRAIVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSN 180 LADKGI+L++WVWQAGG+ASRS+ IVAPEDAKG+KVRGGSREMDMVLQTAGA+VLSVPSN Sbjct: 140 LADKGIILLTWVWQAGGLASRSKPIVAPEDAKGMKVRGGSREMDMVLQTAGASVLSVPSN 199 Query: 181 ELYAAMQTGACDAGITSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPK 240 E+YAAMQTGACDA +TSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPK Sbjct: 200 EIYAAMQTGACDAALTSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPK 259 Query: 241 NQQDIILAVGTELEAFGRKGAQDDDTEVAKVYEKAGAKVSALDATIVGKWRDIARDTAWK 300 NQQD++LAVG ELE FGRKGAQDDD EVAKVYEKAGAKVS LDA VGKWRDIARDTAWK Sbjct: 260 NQQDVLLAVGAELEVFGRKGAQDDDVEVAKVYEKAGAKVSVLDAATVGKWRDIARDTAWK 319 Query: 301 DYGAKTATAANLLKLASDVAA 321 DYGAKTATAANLLKLA+DVAA Sbjct: 320 DYGAKTATAANLLKLATDVAA 340 >ref|YP_532399.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] gb|ABD88080.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 338 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 289/319 (90%), Positives = 303/319 (94%) Query: 3 IGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSGGELTAEVYPNSSLIKTN 62 G AHAATTLKISHQFPGGTIDKGDFRDRL R FA E+AKRSGGEL EVYPNSSLIKT Sbjct: 20 FGPAHAATTLKISHQFPGGTIDKGDFRDRLTRKFADEIAKRSGGELIGEVYPNSSLIKTT 79 Query: 63 AQFSAMRKGALDLSLYPMPYAGGELPETNIGLMPGLVTTYDQGLRWKKEPVGKALTDFLA 122 AQFSA+RKGALDLSLYPMPYAGGE+PETNIGLMPGLV+TYDQGLRWK +P+GKALTDFLA Sbjct: 80 AQFSALRKGALDLSLYPMPYAGGEVPETNIGLMPGLVSTYDQGLRWKTQPIGKALTDFLA 139 Query: 123 DKGILLISWVWQAGGVASRSRAIVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSNEL 182 DKGI+LISWVWQAGGVASR+R +VAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSNE+ Sbjct: 140 DKGIVLISWVWQAGGVASRTRPLVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSNEI 199 Query: 183 YAAMQTGACDAGITSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPKNQ 242 YAAMQTGACDAGITSSTSLISFRLEEVAK LTSGAGASYWFMLEPLMMSKAIFDKLPKNQ Sbjct: 200 YAAMQTGACDAGITSSTSLISFRLEEVAKHLTSGAGASYWFMLEPLMMSKAIFDKLPKNQ 259 Query: 243 QDIILAVGTELEAFGRKGAQDDDTEVAKVYEKAGAKVSALDATIVGKWRDIARDTAWKDY 302 QDIILAVG+ELEAFGRKGAQDDD EVAKVYEKAGAKV+ LDA IVG+WRDIARDTAWKDY Sbjct: 260 QDIILAVGSELEAFGRKGAQDDDVEVAKVYEKAGAKVAPLDAAIVGRWRDIARDTAWKDY 319 Query: 303 GAKTATAANLLKLASDVAA 321 AKTAT ANLLKLA+DVAA Sbjct: 320 AAKTATCANLLKLATDVAA 338 >ref|YP_001240024.1| putative TRAP-type C4-dicarboxylate transport system [Bradyrhizobium sp. BTAi1] gb|ABQ36118.1| putative TRAP-type C4-dicarboxylate transport system [Bradyrhizobium sp. BTAi1] Length = 340 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 278/321 (86%), Positives = 298/321 (92%) Query: 1 MGIGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSGGELTAEVYPNSSLIK 60 G GTA AATTLKISHQFPGGTIDKGDFRDRLCRMFA EV+KRSGGE+ AE+YPNSSLIK Sbjct: 20 FGTGTARAATTLKISHQFPGGTIDKGDFRDRLCRMFAEEVSKRSGGEIAAEIYPNSSLIK 79 Query: 61 TNAQFSAMRKGALDLSLYPMPYAGGELPETNIGLMPGLVTTYDQGLRWKKEPVGKALTDF 120 T AQFSAMRKGALD+SLYPMPYAGGE+PETNIGLMPGLVTTYDQGLRWK EPVGKAL+DF Sbjct: 80 TVAQFSAMRKGALDISLYPMPYAGGEVPETNIGLMPGLVTTYDQGLRWKNEPVGKALSDF 139 Query: 121 LADKGILLISWVWQAGGVASRSRAIVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSN 180 LADKGI+L++WVWQAGGVASRSR +V P+DAKG+KVRGGSREMDMVLQTAGA+VLSVPSN Sbjct: 140 LADKGIILLTWVWQAGGVASRSRPLVTPDDAKGMKVRGGSREMDMVLQTAGASVLSVPSN 199 Query: 181 ELYAAMQTGACDAGITSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPK 240 E+Y AMQTGACDAG+TSSTSLISFRLEEVAK+LTSGA ASYWFMLEPLMMSKA FDKLPK Sbjct: 200 EIYTAMQTGACDAGLTSSTSLISFRLEEVAKALTSGAKASYWFMLEPLMMSKATFDKLPK 259 Query: 241 NQQDIILAVGTELEAFGRKGAQDDDTEVAKVYEKAGAKVSALDATIVGKWRDIARDTAWK 300 NQQD++LAVG ELEAFGRKGAQDDD EVAKVYEKAGAKV+ LD V KWRDIARDTAWK Sbjct: 260 NQQDVLLAVGAELEAFGRKGAQDDDIEVAKVYEKAGAKVAELDLETVNKWRDIARDTAWK 319 Query: 301 DYGAKTATAANLLKLASDVAA 321 DYG K+A A LLKLASDVAA Sbjct: 320 DYGGKSANCAKLLKLASDVAA 340 >ref|YP_001205684.1| putative TRAP-type C4-dicarboxylate transport system binding periplasmic protein DctP [Bradyrhizobium sp. ORS 278] emb|CAL77458.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like); putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 340 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 275/321 (85%), Positives = 298/321 (92%) Query: 1 MGIGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSGGELTAEVYPNSSLIK 60 G GTAHAATTLKISHQFPGGTIDKGDFRDRLCR+FA EV+KRSGGE+ AE+YPNSSLIK Sbjct: 20 FGTGTAHAATTLKISHQFPGGTIDKGDFRDRLCRVFAEEVSKRSGGEIAAEIYPNSSLIK 79 Query: 61 TNAQFSAMRKGALDLSLYPMPYAGGELPETNIGLMPGLVTTYDQGLRWKKEPVGKALTDF 120 T AQFSAMRKGALD+SLYPMPYAGGELPETNIGLMPGLVTTYDQG+RWK EPVGKAL+DF Sbjct: 80 TVAQFSAMRKGALDISLYPMPYAGGELPETNIGLMPGLVTTYDQGMRWKNEPVGKALSDF 139 Query: 121 LADKGILLISWVWQAGGVASRSRAIVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSN 180 LADKGI+L++WVWQAGGVASRSR ++ P+DAKG+KVRGGSREMDMVLQTAGA+VLSVPSN Sbjct: 140 LADKGIILLTWVWQAGGVASRSRPLLTPDDAKGMKVRGGSREMDMVLQTAGASVLSVPSN 199 Query: 181 ELYAAMQTGACDAGITSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPK 240 E+Y AMQTGACDAG+TSSTSLISFRLEEVAK+LTSGA ASYWFMLEPLMMSKA FDKLPK Sbjct: 200 EIYTAMQTGACDAGLTSSTSLISFRLEEVAKALTSGAKASYWFMLEPLMMSKASFDKLPK 259 Query: 241 NQQDIILAVGTELEAFGRKGAQDDDTEVAKVYEKAGAKVSALDATIVGKWRDIARDTAWK 300 NQQDI++ VG E+EAFGRKGAQ+DD EVAKVYEKAGAKV LD IV KWRDIARDTAWK Sbjct: 260 NQQDILMTVGAEMEAFGRKGAQEDDIEVAKVYEKAGAKVVELDVEIVNKWRDIARDTAWK 319 Query: 301 DYGAKTATAANLLKLASDVAA 321 DYG K+A A LLKLASDVAA Sbjct: 320 DYGGKSANCAKLLKLASDVAA 340 >ref|YP_001991797.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas palustris TIE-1] gb|ACF01322.1| TRAP dicarboxylate transporter- DctP subunit [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 273/319 (85%), Positives = 293/319 (91%) Query: 2 GIGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKRSGGELTAEVYPNSSLIKT 61 GIG+A AATTLKISHQFPGGTIDKGDFRDRLCR FA E++KRSGGEL EVYP SSLIKT Sbjct: 21 GIGSAQAATTLKISHQFPGGTIDKGDFRDRLCRKFADEISKRSGGELVGEVYPGSSLIKT 80 Query: 62 NAQFSAMRKGALDLSLYPMPYAGGELPETNIGLMPGLVTTYDQGLRWKKEPVGKALTDFL 121 NAQFSAMRKGALDLSLYPMPYAGGE+PETNIGLMPGLV+TY+QGL WK +PVGKALTDFL Sbjct: 81 NAQFSAMRKGALDLSLYPMPYAGGEVPETNIGLMPGLVSTYEQGLSWKTKPVGKALTDFL 140 Query: 122 ADKGILLISWVWQAGGVASRSRAIVAPEDAKGLKVRGGSREMDMVLQTAGAAVLSVPSNE 181 ADKGI+L++WVWQAGGVASRS+A+++P+DAKGLKVRGGSREMDMVLQ AGAAVLSVPSNE Sbjct: 141 ADKGIVLVTWVWQAGGVASRSKALLSPDDAKGLKVRGGSREMDMVLQQAGAAVLSVPSNE 200 Query: 182 LYAAMQTGACDAGITSSTSLISFRLEEVAKSLTSGAGASYWFMLEPLMMSKAIFDKLPKN 241 +YAAMQTGACDAGITSSTSLISFRLEEVAK LTSGA ASYWFMLEPLMMSKAIFDKLPKN Sbjct: 201 IYAAMQTGACDAGITSSTSLISFRLEEVAKHLTSGADASYWFMLEPLMMSKAIFDKLPKN 260 Query: 242 QQDIILAVGTELEAFGRKGAQDDDTEVAKVYEKAGAKVSALDATIVGKWRDIARDTAWKD 301 QDIIL+VG ELE FG++GAQ DD EVAKVYEKAGAKV LDA V KW IARDTAWKD Sbjct: 261 HQDIILSVGAELETFGKQGAQADDIEVAKVYEKAGAKVDKLDAATVEKWAVIARDTAWKD 320 Query: 302 YGAKTATAANLLKLASDVA 320 YG KTAT ANLLKLA+D A Sbjct: 321 YGKKTATCANLLKLATDAA 339