BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0015.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205683.1| putative TRAP-type C4-dicarboxylate transpor... 273 1e-71 ref|NP_771069.1| hypothetical protein bll4429 [Bradyrhizobium ja... 252 2e-65 ref|YP_001991796.1| Tripartite ATP-independent periplasmic trans... 232 1e-59 ref|NP_947884.1| TRAP dicarboxylate family transporter subunit D... 232 2e-59 ref|YP_001240023.1| putative TRAP-type C4-dicarboxylate transpor... 229 1e-58 >ref|YP_001205683.1| putative TRAP-type C4-dicarboxylate transport system DctQ subunit [Bradyrhizobium sp. ORS 278] emb|CAL77457.1| putative TRAP-type C4-dicarboxylate transport system, DctQ subunit; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 182 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 135/183 (73%), Positives = 151/183 (82%), Gaps = 1/183 (0%) Query: 1 MMHGPVADQAETASIAAGNTPVALLGRALSICNNIIVVFAALALVAACVILSYSVLGRAL 60 MMH PV+D T + A P+A + R +S N+IIVVFAA+AL+AACVILSYSV GRAL Sbjct: 1 MMHVPVSDSEATPTTGASG-PLAPVQRVISALNSIIVVFAAIALIAACVILSYSVAGRAL 59 Query: 61 FHSPNYWQDEAAVFLLVGATFMTSAYVQSQRGHVSIEAFVGLLSARANAIRLWLVDVASF 120 F + NYWQDEAAVFLLVGATFMT+AYVQ RGHVSIEAFVGL+S AN IRLWLVDVASF Sbjct: 60 FKAANYWQDEAAVFLLVGATFMTTAYVQEHRGHVSIEAFVGLMSPTANRIRLWLVDVASF 119 Query: 121 AFCAFFAWKSWTLAHEAYVDGQVSNSMWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTG 180 FCAFF WKSWTL HEA+ DGQVSNSMWSPPLAIPY LMA GMTLLC+Q+LLQI+ PL+G Sbjct: 120 LFCAFFTWKSWTLTHEAFEDGQVSNSMWSPPLAIPYGLMAAGMTLLCIQMLLQILSPLSG 179 Query: 181 GAR 183 R Sbjct: 180 ARR 182 >ref|NP_771069.1| hypothetical protein bll4429 [Bradyrhizobium japonicum USDA 110] dbj|BAC49694.1| bll4429 [Bradyrhizobium japonicum USDA 110] Length = 184 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 150/183 (81%) Query: 1 MMHGPVADQAETASIAAGNTPVALLGRALSICNNIIVVFAALALVAACVILSYSVLGRAL 60 M HGP+ D+ + A+ AA A + R L+I N++IVVFAA+ALVAAC ILSYSVL RAL Sbjct: 1 MSHGPLPDRDDQANAAARTGLAAAIDRGLAILNSMIVVFAAIALVAACAILSYSVLSRAL 60 Query: 61 FHSPNYWQDEAAVFLLVGATFMTSAYVQSQRGHVSIEAFVGLLSARANAIRLWLVDVASF 120 F + NYWQDEAAVFLLVGATFMT+AYVQ RGH+ IEAFVGLLS AN IRLWLVD A+F Sbjct: 61 FKAANYWQDEAAVFLLVGATFMTAAYVQQNRGHIGIEAFVGLLSPLANRIRLWLVDAATF 120 Query: 121 AFCAFFAWKSWTLAHEAYVDGQVSNSMWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTG 180 FCAFF WKSWTLAHEAYVDGQVSNSMWSPPLAIPY LMALGM+LLCVQIL+Q+ +P G Sbjct: 121 MFCAFFTWKSWTLAHEAYVDGQVSNSMWSPPLAIPYSLMALGMSLLCVQILVQLALPFAG 180 Query: 181 GAR 183 R Sbjct: 181 ARR 183 >ref|YP_001991796.1| Tripartite ATP-independent periplasmic transporter DctQ component [Rhodopseudomonas palustris TIE-1] gb|ACF01321.1| Tripartite ATP-independent periplasmic transporter DctQ component [Rhodopseudomonas palustris TIE-1] Length = 183 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 124/183 (67%), Positives = 140/183 (76%), Gaps = 1/183 (0%) Query: 1 MMHGPVADQAETASIAAGNTPVALLGRALSICNNIIVVFAALALVAACVILSYSVLGRAL 60 MMHGPV Q + S A T LG AL++ N I+V AA+ALV AC ILSYSV R+L Sbjct: 1 MMHGPVPGQPDPTSAAQRETG-GPLGHALALVNRAILVLAAVALVVACCILSYSVAVRSL 59 Query: 61 FHSPNYWQDEAAVFLLVGATFMTSAYVQSQRGHVSIEAFVGLLSARANAIRLWLVDVASF 120 FHS YWQDEAAVFLLVGATF+T+A+VQSQRGH+ IEAF GLL N +RL LVDVAS Sbjct: 60 FHSATYWQDEAAVFLLVGATFLTAAFVQSQRGHIGIEAFTGLLPPAVNRVRLLLVDVASL 119 Query: 121 AFCAFFAWKSWTLAHEAYVDGQVSNSMWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTG 180 AFC FFAWKSWTL HEAYVDGQVSNS+WSPPLAIPY LMA GMTLLC+QI +QI+ +G Sbjct: 120 AFCGFFAWKSWTLTHEAYVDGQVSNSIWSPPLAIPYALMAAGMTLLCLQIAVQIVNSFSG 179 Query: 181 GAR 183 R Sbjct: 180 TKR 182 >ref|NP_947884.1| TRAP dicarboxylate family transporter subunit DctQ [Rhodopseudomonas palustris CGA009] emb|CAE27983.1| possible TrapT family, dctQ subunit, C4-dicarboxylate transport [Rhodopseudomonas palustris CGA009] Length = 183 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/183 (67%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 1 MMHGPVADQAETASIAAGNTPVALLGRALSICNNIIVVFAALALVAACVILSYSVLGRAL 60 MMHGPV Q + S A T LG AL++ N I+V AA+ALV AC ILSYSV R+L Sbjct: 1 MMHGPVPGQPDPTSTAQRETG-GPLGHALALVNRAILVLAAVALVVACCILSYSVAVRSL 59 Query: 61 FHSPNYWQDEAAVFLLVGATFMTSAYVQSQRGHVSIEAFVGLLSARANAIRLWLVDVASF 120 FHS YWQDEAAVFLLVGATF+T+A+VQSQRGH+ IEAF GLL N +RL LVDVAS Sbjct: 60 FHSATYWQDEAAVFLLVGATFLTAAFVQSQRGHIGIEAFTGLLPPAVNRVRLLLVDVASL 119 Query: 121 AFCAFFAWKSWTLAHEAYVDGQVSNSMWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTG 180 AFC FFAWKSWTL HEAYVDGQVSNS+WSPPLAIPY LMA GMTLLC+QI +QI+ G Sbjct: 120 AFCGFFAWKSWTLTHEAYVDGQVSNSIWSPPLAIPYALMAAGMTLLCLQIAVQIVNSFNG 179 Query: 181 GAR 183 R Sbjct: 180 TKR 182 >ref|YP_001240023.1| putative TRAP-type C4-dicarboxylate transport system DctQ subunit [Bradyrhizobium sp. BTAi1] gb|ABQ36117.1| putative TRAP-type C4-dicarboxylate transport system, DctQ subunit [Bradyrhizobium sp. BTAi1] Length = 180 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 2 MHGPVADQAETASIAAGNTPVALLGRALSICNNIIVVFAALALVAACVILSYSVLGRALF 61 MH PV+D T + A+G P+A L R +S+ N+IIVV AA+AL+AACVILSYSV GRALF Sbjct: 1 MHAPVSDSEATPTGASG--PLAPLQRVISMLNSIIVVLAAIALIAACVILSYSVAGRALF 58 Query: 62 HSPNYWQDEAAVFLLVGATFMTSAYVQSQRGHVSIEAFVGLLSARANAIRLWLVDVASFA 121 + NYWQDEAAVFLLVGATFMT+AYVQ RGHVSIEAFVGL+S AN IRLWLVDVASF Sbjct: 59 KAANYWQDEAAVFLLVGATFMTAAYVQEHRGHVSIEAFVGLMSPLANKIRLWLVDVASFL 118 Query: 122 FCAFFAWKSWTLAHEAYVDGQVSNSMWSPPLAIPYVLMALGMTLLCVQILLQIIIPLTGG 181 FCAFF WKSWTL HEA+ DGQVSNSMWSPPLAIPY LMA GMTLLC+Q+LLQI+ PLTG Sbjct: 119 FCAFFTWKSWTLTHEAWEDGQVSNSMWSPPLAIPYALMAAGMTLLCLQLLLQIVAPLTGA 178 Query: 182 AR 183 R Sbjct: 179 RR 180