BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0013.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205682.1| putative TRAP-type C4-dicarboxylate transpor... 477 e-133 ref|YP_001991795.1| TRAP dicarboxylate transporter subunit DctM ... 472 e-131 ref|YP_532397.1| TRAP C4-dicarboxylate transport system permease... 466 e-129 ref|NP_771068.1| hypothetical protein bll4428 [Bradyrhizobium ja... 459 e-127 ref|NP_947883.1| TRAP dicarboxylate family transporter subunit D... 447 e-123 >ref|YP_001205682.1| putative TRAP-type C4-dicarboxylate transport system large permease component DctM [Bradyrhizobium sp. ORS 278] emb|CAL77456.1| putative TRAP-type C4-dicarboxylate transporter, DctM subunit; putative membrane component [Bradyrhizobium sp. ORS 278] Length = 452 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 248/292 (84%), Positives = 272/292 (93%) Query: 1 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGLYAVFRFRKEYAMARAVYDATGKDAAILQ 60 MILFA+AAEKSLGRLFLAGIGPGLLLVTLFG+YAV RFR+EYA A+A Y+ +G + IL Sbjct: 161 MILFAIAAEKSLGRLFLAGIGPGLLLVTLFGVYAVVRFRQEYAQAKAAYEKSGAWSDILT 220 Query: 61 HDEFTMAERFSALPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAVIYSVWT 120 D+FTMA+RFS LPRVIPFVLLLTGVM+ALYGG+ATPSETAGLGG+LAL LIA+IY VWT Sbjct: 221 KDDFTMAQRFSVLPRVIPFVLLLTGVMVALYGGFATPSETAGLGGILALVLIAIIYRVWT 280 Query: 121 PSDLSPILKSTIRESTMLMLIIGMSLLYSYVMSYLHISQSAAEAIVAMHLPRWELLFAIL 180 PSDL+PI+++T+RESTMLMLIIGMSLLYSYVMSYLHISQS AE+IVAMHLPRWELLFAIL Sbjct: 281 PSDLAPIMRATLRESTMLMLIIGMSLLYSYVMSYLHISQSVAESIVAMHLPRWELLFAIL 340 Query: 181 VMVIVLGFFLPPVSIILMTAPIILPPLRAAEFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 240 +MV+VLGFFLPPVSIILMTAPIILPPLRAA FDIIWFGVVMTIVMEMGLIHPPVGLNIFV Sbjct: 341 LMVVVLGFFLPPVSIILMTAPIILPPLRAANFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 400 Query: 241 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFFPEISTWLPNLIMGPDGGR 292 IRNVAPDIPL +VIWGTLPFVLLMM AVLLLCF P+IST LPNL+MGPD R Sbjct: 401 IRNVAPDIPLRDVIWGTLPFVLLMMAAVLLLCFVPQISTGLPNLVMGPDLSR 452 >ref|YP_001991795.1| TRAP dicarboxylate transporter subunit DctM [Rhodopseudomonas palustris TIE-1] gb|ACF01320.1| TRAP dicarboxylate transporter, DctM subunit [Rhodopseudomonas palustris TIE-1] Length = 452 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 252/292 (86%), Positives = 271/292 (92%) Query: 1 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGLYAVFRFRKEYAMARAVYDATGKDAAILQ 60 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFG+YAV RFRKEYA A+A Y+ATG+ +AIL Sbjct: 161 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGIYAVIRFRKEYATAKAAYEATGQTSAILT 220 Query: 61 HDEFTMAERFSALPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAVIYSVWT 120 ++FTMA+RF ALPRV+PFV+LLTGVMIALYGGYATPSETAGLGGLLAL LIA+IY VW Sbjct: 221 DEKFTMAQRFGALPRVLPFVILLTGVMIALYGGYATPSETAGLGGLLALLLIALIYGVWK 280 Query: 121 PSDLSPILKSTIRESTMLMLIIGMSLLYSYVMSYLHISQSAAEAIVAMHLPRWELLFAIL 180 PSDLSPI+ ST+RESTMLM+IIGMSLLYSYVMSYLHISQSAAEAIVAM LPRW LL AIL Sbjct: 281 PSDLSPIMTSTVRESTMLMMIIGMSLLYSYVMSYLHISQSAAEAIVAMQLPRWGLLAAIL 340 Query: 181 VMVIVLGFFLPPVSIILMTAPIILPPLRAAEFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 240 +V+VLGFFLPPVSIILMTAPIILPPLRAA FDIIWFGVVMTIVMEMGLIHPPVGLNIFV Sbjct: 341 ALVVVLGFFLPPVSIILMTAPIILPPLRAAGFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 400 Query: 241 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFFPEISTWLPNLIMGPDGGR 292 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLC P ISTWLP+L+MGP+ R Sbjct: 401 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCLVPGISTWLPDLVMGPESVR 452 >ref|YP_532397.1| TRAP C4-dicarboxylate transport system permease DctM [Rhodopseudomonas palustris BisB18] gb|ABD88078.1| TRAP dicarboxylate transporter- DctM subunit [Rhodopseudomonas palustris BisB18] Length = 452 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 249/292 (85%), Positives = 269/292 (92%) Query: 1 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGLYAVFRFRKEYAMARAVYDATGKDAAILQ 60 MILFAVAAEKSLGRLFLAGIGPGLLLV LFG YAVFRFRKEYA A +Y+ TG DA IL Sbjct: 161 MILFAVAAEKSLGRLFLAGIGPGLLLVLLFGSYAVFRFRKEYAAASRLYEQTGVDAPILA 220 Query: 61 HDEFTMAERFSALPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAVIYSVWT 120 D+FTMA+RF+ALPRV PFV+LLTGVMIALYGGYATPSETAGLGGLLAL LIA+IY VW Sbjct: 221 RDKFTMAQRFNALPRVAPFVILLTGVMIALYGGYATPSETAGLGGLLALALIALIYGVWR 280 Query: 121 PSDLSPILKSTIRESTMLMLIIGMSLLYSYVMSYLHISQSAAEAIVAMHLPRWELLFAIL 180 P+DL+PIL++TIRESTMLM+IIGMSLLYSYVMSYLHISQS AE+IVAM LPRWELL AIL Sbjct: 281 PTDLAPILQATIRESTMLMMIIGMSLLYSYVMSYLHISQSVAESIVAMQLPRWELLAAIL 340 Query: 181 VMVIVLGFFLPPVSIILMTAPIILPPLRAAEFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 240 VMV+VLGFFLPPVSIILMTAPIILPPLRAA FDIIWFG+VMTIVMEMGLIHPPVGLNIFV Sbjct: 341 VMVVVLGFFLPPVSIILMTAPIILPPLRAANFDIIWFGIVMTIVMEMGLIHPPVGLNIFV 400 Query: 241 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFFPEISTWLPNLIMGPDGGR 292 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCF P+I+T P+L+MGP+ R Sbjct: 401 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFVPQIATGFPDLVMGPESVR 452 >ref|NP_771068.1| hypothetical protein bll4428 [Bradyrhizobium japonicum USDA 110] dbj|BAC49693.1| bll4428 [Bradyrhizobium japonicum USDA 110] Length = 452 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 257/292 (88%), Positives = 271/292 (92%) Query: 1 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGLYAVFRFRKEYAMARAVYDATGKDAAILQ 60 MILFAVAAEKSLGRLFLAGIGPGLLLV+LFG YAV RFR+EYA A A+Y G +AAIL Sbjct: 161 MILFAVAAEKSLGRLFLAGIGPGLLLVSLFGTYAVIRFRREYAAAEAIYRKGGPEAAILA 220 Query: 61 HDEFTMAERFSALPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAVIYSVWT 120 DE+T+AERFS LPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIA IYSVW Sbjct: 221 RDEYTLAERFSVLPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAAIYSVWR 280 Query: 121 PSDLSPILKSTIRESTMLMLIIGMSLLYSYVMSYLHISQSAAEAIVAMHLPRWELLFAIL 180 PSDL+PI+KSTIRESTMLM+IIGMSLLYSYVMSYLHISQS AE++VAMHLPRW LLFAIL Sbjct: 281 PSDLAPIMKSTIRESTMLMMIIGMSLLYSYVMSYLHISQSVAESVVAMHLPRWGLLFAIL 340 Query: 181 VMVIVLGFFLPPVSIILMTAPIILPPLRAAEFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 240 VMV+VLGFFLPPVSIILMTAPIILPPLRAA FDIIWFGVVMTIVMEMGLIHPPVGLNIFV Sbjct: 341 VMVVVLGFFLPPVSIILMTAPIILPPLRAANFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 400 Query: 241 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFFPEISTWLPNLIMGPDGGR 292 IRNVAPDIPLSEVIWGTLPFVLLMM AVLLLCF P IST LP+L+MGPDG R Sbjct: 401 IRNVAPDIPLSEVIWGTLPFVLLMMLAVLLLCFVPGISTALPDLVMGPDGSR 452 >ref|NP_947883.1| TRAP dicarboxylate family transporter subunit DctM [Rhodopseudomonas palustris CGA009] emb|CAE27982.1| TrapT family, dctM subunit, C4-dicarboxylate transport [Rhodopseudomonas palustris CGA009] Length = 452 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 252/292 (86%), Positives = 270/292 (92%) Query: 1 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGLYAVFRFRKEYAMARAVYDATGKDAAILQ 60 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFG+YAV RFRKEYA A+A Y+ATG+ +AIL Sbjct: 161 MILFAVAAEKSLGRLFLAGIGPGLLLVTLFGIYAVVRFRKEYATAKAAYEATGQTSAILT 220 Query: 61 HDEFTMAERFSALPRVIPFVLLLTGVMIALYGGYATPSETAGLGGLLALGLIAVIYSVWT 120 ++FTMA+RF ALPRV+PFV+LLTGVMIALYGGYATPSETAGLGGLLAL LIA+IY VW Sbjct: 221 DEKFTMAQRFGALPRVLPFVILLTGVMIALYGGYATPSETAGLGGLLALLLIALIYGVWK 280 Query: 121 PSDLSPILKSTIRESTMLMLIIGMSLLYSYVMSYLHISQSAAEAIVAMHLPRWELLFAIL 180 PSDLSPI+ STIRESTMLM+IIGMSLLYSYVMSYLHISQSAAEAIVAM LPRW LL AIL Sbjct: 281 PSDLSPIMTSTIRESTMLMMIIGMSLLYSYVMSYLHISQSAAEAIVAMQLPRWGLLAAIL 340 Query: 181 VMVIVLGFFLPPVSIILMTAPIILPPLRAAEFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 240 +V+VLGFFLPPVSIILMTAPIILPPLRAA FDIIWFGVVMTIVMEMGLIHPPVGLNIFV Sbjct: 341 ALVVVLGFFLPPVSIILMTAPIILPPLRAAGFDIIWFGVVMTIVMEMGLIHPPVGLNIFV 400 Query: 241 IRNVAPDIPLSEVIWGTLPFVLLMMFAVLLLCFFPEISTWLPNLIMGPDGGR 292 IRNVAPDIPLSEVIWGTLPFVLLMM AVLLLC P ISTWLP+L+MGP+ R Sbjct: 401 IRNVAPDIPLSEVIWGTLPFVLLMMLAVLLLCLIPGISTWLPDLVMGPESIR 452