BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0004.p (473 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771418.1| dihydrolipoamide dehydrogenase [Bradyrhizobium ... 892 0.0 ref|YP_001240401.1| dihydrolipoamide dehydrogenase [Bradyrhizobi... 880 0.0 ref|YP_004108959.1| dihydrolipoamide dehydrogenase [Rhodopseudom... 878 0.0 ref|YP_001206060.1| dihydrolipoamide dehydrogenase [Bradyrhizobi... 878 0.0 ref|YP_532363.1| dihydrolipoamide dehydrogenase [Rhodopseudomona... 875 0.0 >ref|NP_771418.1| dihydrolipoamide dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC50043.1| dihydrolipoamide dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 473 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/473 (94%), Positives = 460/473 (97%) Query: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 MADTSFD+IIIGSGPGGYVTAIRAAQLGFK AIVEKSYLGGICLNWGCIPTKALLRSAEI Sbjct: 1 MADTSFDIIIIGSGPGGYVTAIRAAQLGFKVAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 Query: 61 YHYMQHAKDYGLSADNVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGEATIDAP 120 YHYMQHAKDYGLSA+ VSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWG A+IDAP Sbjct: 61 YHYMQHAKDYGLSAEKVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGAASIDAP 120 Query: 121 GKITVKKSAVEAPKGASGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPERM 180 GK+TVKKS VEAPKGA GEGTYQAKHIIVATGARPRVLPGLEPDKKL+WTYFEAMVPERM Sbjct: 121 GKVTVKKSDVEAPKGALGEGTYQAKHIIVATGARPRVLPGLEPDKKLIWTYFEAMVPERM 180 Query: 181 PKSLLVVGSGAIGIEFASFFHTMGADVTVVEVLPQILPVEDAEIAGLARKRFEKMGIKIL 240 PKSLLVVGSGAIGIEFASFFHTMG+DVTVVEVLPQILPVEDAEIAGLARKRFEK GIKIL Sbjct: 181 PKSLLVVGSGAIGIEFASFFHTMGSDVTVVEVLPQILPVEDAEIAGLARKRFEKQGIKIL 240 Query: 241 TSTKVTKLEKKADSVVATIDDGKGQPQTKEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 +STKVTKLEKKADSVVATIDDGKG+P T EFERVISAVGVVGNIE+LGLEKLGVKTDRGC Sbjct: 241 SSTKVTKLEKKADSVVATIDDGKGKPVTTEFERVISAVGVVGNIESLGLEKLGVKTDRGC 300 Query: 301 IVIDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICIEAIKGLHPHPMDKLMIPGCTYC 360 IVIDG GKTNVPGIYAIGDVAGPPMLAHKAEHEGVIC+EAIKGLHPHPMDK +IPGCTYC Sbjct: 301 IVIDGYGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICVEAIKGLHPHPMDKNLIPGCTYC 360 Query: 361 NPQVASVGLTEAMAKEGGREIRVGRFPFVGNGKAIALGEDQGLVKVVFDKKTGQLLGAHM 420 PQVASVGLTEA AKE GREIRVGRFPFVGNGKAIALGEDQGLVKV+FDKKTGQLLGAHM Sbjct: 361 QPQVASVGLTEAKAKENGREIRVGRFPFVGNGKAIALGEDQGLVKVIFDKKTGQLLGAHM 420 Query: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNI 473 +GAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNI Sbjct: 421 VGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNI 473 >ref|YP_001240401.1| dihydrolipoamide dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ36495.1| dihydrolipoamide dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 473 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/473 (90%), Positives = 452/473 (95%) Query: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAI+EKSYLGGICLNWGCIPTKALLRSAEI Sbjct: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIIEKSYLGGICLNWGCIPTKALLRSAEI 60 Query: 61 YHYMQHAKDYGLSADNVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGEATIDAP 120 YHYMQHAKDYGLSA+ +S+DPKAVV RSRGVSKRLNDGVGFLMKKNKV VIWG+A IDAP Sbjct: 61 YHYMQHAKDYGLSAEKISYDPKAVVARSRGVSKRLNDGVGFLMKKNKVQVIWGKAAIDAP 120 Query: 121 GKITVKKSAVEAPKGASGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPERM 180 GKITV KS VE+PKGA GEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPE+M Sbjct: 121 GKITVTKSDVESPKGALGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPEKM 180 Query: 181 PKSLLVVGSGAIGIEFASFFHTMGADVTVVEVLPQILPVEDAEIAGLARKRFEKMGIKIL 240 PKSLLVVGSGAIGIEFASFF TMG++VTVVEVLPQILPVEDAEIAG+ARK+ EK G+KI+ Sbjct: 181 PKSLLVVGSGAIGIEFASFFRTMGSEVTVVEVLPQILPVEDAEIAGIARKQLEKQGLKIM 240 Query: 241 TSTKVTKLEKKADSVVATIDDGKGQPQTKEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 T KVTKL+KK DSVVATIDDGKG+ + EFERVISAVGVVGNIENLGLEKLGVKTDRGC Sbjct: 241 TGAKVTKLDKKTDSVVATIDDGKGKIEAVEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 Query: 301 IVIDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICIEAIKGLHPHPMDKLMIPGCTYC 360 IVIDG GKTNVPGIYAIGDVAGPPMLAHKAEHEGV+CIEAIKGLHPH MDK +IPGCTYC Sbjct: 301 IVIDGYGKTNVPGIYAIGDVAGPPMLAHKAEHEGVVCIEAIKGLHPHAMDKNLIPGCTYC 360 Query: 361 NPQVASVGLTEAMAKEGGREIRVGRFPFVGNGKAIALGEDQGLVKVVFDKKTGQLLGAHM 420 +PQ+ASVGLTEA AKE GR+IRVGRFPFVGNGKAIALGEDQGLVKV+FDKKTGQL+GAHM Sbjct: 361 HPQIASVGLTEAKAKEQGRDIRVGRFPFVGNGKAIALGEDQGLVKVIFDKKTGQLIGAHM 420 Query: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNI 473 +GAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLN+ Sbjct: 421 VGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNM 473 >ref|YP_004108959.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris DX-1] gb|ADU44226.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris DX-1] Length = 473 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/472 (89%), Positives = 447/472 (94%) Query: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 M+DTSFDVIIIGSGPGGYV AIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI Sbjct: 1 MSDTSFDVIIIGSGPGGYVAAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 Query: 61 YHYMQHAKDYGLSADNVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGEATIDAP 120 YHYMQHAKDYGLSADN+SFDPKA+VQRSRGVSKRLNDGVGFLMKKNK+++IWG+ATIDAP Sbjct: 61 YHYMQHAKDYGLSADNISFDPKAIVQRSRGVSKRLNDGVGFLMKKNKISIIWGQATIDAP 120 Query: 121 GKITVKKSAVEAPKGASGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPERM 180 GK+TV S EAPKGA G+YQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPE M Sbjct: 121 GKLTVAASKTEAPKGALPPGSYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPEVM 180 Query: 181 PKSLLVVGSGAIGIEFASFFHTMGADVTVVEVLPQILPVEDAEIAGLARKRFEKMGIKIL 240 PKSLLVVGSGAIGIEFASFFHTMGA VTVVEVLPQILPVED+EIA LARKRFEK GIKIL Sbjct: 181 PKSLLVVGSGAIGIEFASFFHTMGAKVTVVEVLPQILPVEDSEIAALARKRFEKQGIKIL 240 Query: 241 TSTKVTKLEKKADSVVATIDDGKGQPQTKEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 T KVTKL+KKADSVVATID G G+P+T+EF+RVISAVGVVGN+ENLGLEKLGVK DRG Sbjct: 241 TGAKVTKLDKKADSVVATIDPGNGKPETQEFDRVISAVGVVGNVENLGLEKLGVKLDRGT 300 Query: 301 IVIDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICIEAIKGLHPHPMDKLMIPGCTYC 360 IV DGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGV+C+EAIKGLHPHP+DK +IPGCTYC Sbjct: 301 IVTDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVLCVEAIKGLHPHPLDKSLIPGCTYC 360 Query: 361 NPQVASVGLTEAMAKEGGREIRVGRFPFVGNGKAIALGEDQGLVKVVFDKKTGQLLGAHM 420 PQ+ASVGLTEA AKE GREIR+GRFPF NGKAIALGEDQGLVKV+FDKKTGQLLGAHM Sbjct: 361 QPQIASVGLTEAKAKEQGREIRIGRFPFTANGKAIALGEDQGLVKVIFDKKTGQLLGAHM 420 Query: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLN 472 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYG+VLN Sbjct: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGKVLN 472 >ref|YP_001206060.1| dihydrolipoamide dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL77835.1| Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) [Bradyrhizobium sp. ORS 278] Length = 473 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/473 (89%), Positives = 454/473 (95%) Query: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAI+EK++LGGICLNWGCIPTKALLRSAEI Sbjct: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIIEKTHLGGICLNWGCIPTKALLRSAEI 60 Query: 61 YHYMQHAKDYGLSADNVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGEATIDAP 120 YHYMQHAKDYGLSA+ +S+DPKAVVQRSRGVSKRL DGVGFLMKKNKV VIWG A IDAP Sbjct: 61 YHYMQHAKDYGLSAEKISYDPKAVVQRSRGVSKRLADGVGFLMKKNKVQVIWGRANIDAP 120 Query: 121 GKITVKKSAVEAPKGASGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPERM 180 GKI+V K+ VEAPKGA GEG+YQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVP+RM Sbjct: 121 GKISVTKADVEAPKGALGEGSYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPDRM 180 Query: 181 PKSLLVVGSGAIGIEFASFFHTMGADVTVVEVLPQILPVEDAEIAGLARKRFEKMGIKIL 240 PKSLLVVGSGAIGIEFASFF TMG++VTVVEVLPQILPVEDAEIAG+ARK+ EK G+KI+ Sbjct: 181 PKSLLVVGSGAIGIEFASFFRTMGSEVTVVEVLPQILPVEDAEIAGIARKQLEKQGLKIM 240 Query: 241 TSTKVTKLEKKADSVVATIDDGKGQPQTKEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 T KVTKL+KK+DSVVATIDDGKG+ +T EF+RVISAVGVVGNIENLGLEKLGVKTDRGC Sbjct: 241 TGAKVTKLDKKSDSVVATIDDGKGKIETTEFDRVISAVGVVGNIENLGLEKLGVKTDRGC 300 Query: 301 IVIDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICIEAIKGLHPHPMDKLMIPGCTYC 360 IVIDG GKTNVPG+YAIGDVAGPPMLAHKAEHEGV+CIEAIKGLHPHPMDK +IPGCTYC Sbjct: 301 IVIDGYGKTNVPGLYAIGDVAGPPMLAHKAEHEGVVCIEAIKGLHPHPMDKSLIPGCTYC 360 Query: 361 NPQVASVGLTEAMAKEGGREIRVGRFPFVGNGKAIALGEDQGLVKVVFDKKTGQLLGAHM 420 +PQVASVGLTEA AKE GR+IRVGRFPFVGNGKAIALGEDQGLVKV+FDKKTGQL+GAHM Sbjct: 361 HPQVASVGLTEAKAKEQGRDIRVGRFPFVGNGKAIALGEDQGLVKVIFDKKTGQLIGAHM 420 Query: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLNI 473 +GAEVTELIQGYVVAMNLETTEEELMHT+FPHPTLSEMMKEAVLDAYGRVLN+ Sbjct: 421 VGAEVTELIQGYVVAMNLETTEEELMHTIFPHPTLSEMMKEAVLDAYGRVLNM 473 >ref|YP_532363.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris BisB18] gb|ABD88044.1| dihydrolipoamide dehydrogenase [Rhodopseudomonas palustris BisB18] Length = 472 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/472 (89%), Positives = 448/472 (94%), Gaps = 1/472 (0%) Query: 1 MADTSFDVIIIGSGPGGYVTAIRAAQLGFKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 M+DTSFDVIIIGSGPGGYV AIRAAQLG KTAIVEKSYLGGICLNWGCIPTKALLRSAEI Sbjct: 1 MSDTSFDVIIIGSGPGGYVAAIRAAQLGLKTAIVEKSYLGGICLNWGCIPTKALLRSAEI 60 Query: 61 YHYMQHAKDYGLSADNVSFDPKAVVQRSRGVSKRLNDGVGFLMKKNKVTVIWGEATIDAP 120 YHYMQHAKD+GLSADN+S+DPKAVVQRSRGVSKRL DGVGFLMKKNK+++IWG ATIDAP Sbjct: 61 YHYMQHAKDFGLSADNISYDPKAVVQRSRGVSKRLADGVGFLMKKNKISIIWGAATIDAP 120 Query: 121 GKITVKKSAVEAPKGASGEGTYQAKHIIVATGARPRVLPGLEPDKKLVWTYFEAMVPERM 180 GKITVK + E PKGA GEG YQAKHII+ATGARPRVLPGLEPDKKLVWTYFEAMVP+ + Sbjct: 121 GKITVKAAKSEPPKGALGEGAYQAKHIIIATGARPRVLPGLEPDKKLVWTYFEAMVPDAI 180 Query: 181 PKSLLVVGSGAIGIEFASFFHTMGADVTVVEVLPQILPVEDAEIAGLARKRFEKMGIKIL 240 PKSLLVVGSGAIGIEFASFFHTMG+ VTVVEVLPQ+LPVEDAEIAGLARKRFEK GIKIL Sbjct: 181 PKSLLVVGSGAIGIEFASFFHTMGSKVTVVEVLPQVLPVEDAEIAGLARKRFEKQGIKIL 240 Query: 241 TSTKVTKLEKKADSVVATIDDGKGQPQTKEFERVISAVGVVGNIENLGLEKLGVKTDRGC 300 T TKV+KLEKKADSV+ATIDDGK + EF+RVISAVGVVGNIENLGLEKLGVKT+RGC Sbjct: 241 TGTKVSKLEKKADSVIATIDDGK-TTEAIEFDRVISAVGVVGNIENLGLEKLGVKTERGC 299 Query: 301 IVIDGLGKTNVPGIYAIGDVAGPPMLAHKAEHEGVICIEAIKGLHPHPMDKLMIPGCTYC 360 +VIDG GKTN+PGIYAIGDVAGPPMLAHKAEHEGVIC+EAIKGLHPHPMDKL+IPGCTYC Sbjct: 300 VVIDGYGKTNIPGIYAIGDVAGPPMLAHKAEHEGVICVEAIKGLHPHPMDKLLIPGCTYC 359 Query: 361 NPQVASVGLTEAMAKEGGREIRVGRFPFVGNGKAIALGEDQGLVKVVFDKKTGQLLGAHM 420 NPQ+ASVGLTEA AKEGGREIRVGRFPF GNGKAIALGEDQGLVKV+FDK TGQLLGAHM Sbjct: 360 NPQIASVGLTEAKAKEGGREIRVGRFPFAGNGKAIALGEDQGLVKVIFDKTTGQLLGAHM 419 Query: 421 IGAEVTELIQGYVVAMNLETTEEELMHTVFPHPTLSEMMKEAVLDAYGRVLN 472 IGAEVTELIQGYVVAMNLETTE ELMHTVFPHPTLSEMMKEAVLDAYG+VLN Sbjct: 420 IGAEVTELIQGYVVAMNLETTEAELMHTVFPHPTLSEMMKEAVLDAYGQVLN 471