BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0179.0007.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774825.1| transcriptional regulator [Bradyrhizobium japon... 411 e-113 ref|ZP_08627701.1| transcriptional regulator, TetR family [Brady... 313 6e-84 ref|YP_004280214.1| TetR family transcriptional regulator [Agrob... 221 5e-56 ref|YP_004350040.1| TetR family regulatory protein [Burkholderia... 195 3e-48 ref|YP_001773898.1| TetR family transcriptional regulator [Burkh... 173 2e-41 >ref|NP_774825.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53450.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 202 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%) Query: 1 MMTINTKLPVGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDK 60 MMTINTKLPVGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDK Sbjct: 1 MMTINTKLPVGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDK 60 Query: 61 KSVFLRALEFYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAA 120 KSVFLRALEFYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAA Sbjct: 61 KSVFLRALEFYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAA 120 Query: 121 EMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVL 180 EMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVL Sbjct: 121 EMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVL 180 Query: 181 GKVGSRRDEMLKDADLLMEMLF 202 GKVGSRRDEMLKDADLLMEMLF Sbjct: 181 GKVGSRRDEMLKDADLLMEMLF 202 >ref|ZP_08627701.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09605.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] Length = 157 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 156/157 (99%), Positives = 156/157 (99%) Query: 46 MQLSKGSFYKAFGDKKSVFLRALEFYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSS 105 MQLSKGSFYKAFGDKKSVFLRALEFYTDDGVRNVQEVLRS PSPKAAIRNALVRYADLSS Sbjct: 1 MQLSKGSFYKAFGDKKSVFLRALEFYTDDGVRNVQEVLRSDPSPKAAIRNALVRYADLSS 60 Query: 106 GKKGVRGCFGVLTAAEMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEV 165 GKKGVRGCFGVLTAAEMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEV Sbjct: 61 GKKGVRGCFGVLTAAEMLPGDPDIAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEV 120 Query: 166 IAHFIVSHAQGMRVLGKVGSRRDEMLKDADLLMEMLF 202 IAHFIVSHAQGMRVLGKVGSRRDEMLKDADLLMEMLF Sbjct: 121 IAHFIVSHAQGMRVLGKVGSRRDEMLKDADLLMEMLF 157 >ref|YP_004280214.1| TetR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY67836.1| transcriptional regulator, TetR family [Agrobacterium sp. H13-3] Length = 226 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 110/192 (57%), Positives = 136/192 (70%) Query: 10 VGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDKKSVFLRALE 69 VGRPREF+LDEAVR+AM +FWDRG+H+ASLPDLL GM+LS+GSFYKAF DK+ V+LRAL+ Sbjct: 34 VGRPREFELDEAVRKAMHVFWDRGYHEASLPDLLEGMKLSRGSFYKAFVDKRGVYLRALD 93 Query: 70 FYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAAEMLPGDPDI 129 Y +D VR+V E L S PSPKAAI A + D +SG+ G+RGCF V A EMLP D ++ Sbjct: 94 AYIEDAVRSVGEALHSNPSPKAAILEAFSQQVDQASGQDGLRGCFVVFAAVEMLPKDKEV 153 Query: 130 AEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVLGKVGSRRDE 189 A I RLF RLQ L+AA I + QA GEI D +A F+V QGMRVL K G+ R E Sbjct: 154 APRISRLFRRLQDLYAAAIIRAQALGEIDPELDERTLARFLVCQIQGMRVLAKAGADRAE 213 Query: 190 MLKDADLLMEML 201 +L ++ L Sbjct: 214 TRAMVELALKAL 225 >ref|YP_004350040.1| TetR family regulatory protein [Burkholderia gladioli BSR3] gb|AEA64528.1| TetR family regulatory protein [Burkholderia gladioli BSR3] Length = 198 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 99/192 (51%), Positives = 128/192 (66%), Gaps = 1/192 (0%) Query: 10 VGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDKKSVFLRALE 69 +GRPREF+LD+A R AM +FWDRG+ ASLPDL+AG LS+GS YKAFGDKK + L AL+ Sbjct: 7 LGRPREFELDDAARDAMNVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKGLLLAALD 66 Query: 70 FYTDDGVRNVQEVLRSAPSPKAAIRNALVRYADLSSGKKGVRGCFGVLTAAEMLPGDPDI 129 Y DG++ ++L + K AIR++L+RYA LS G G RGC V EM D ++ Sbjct: 67 LYMADGLKATADILAQPGAVKDAIRDSLLRYASLSVGAAGRRGCLVVAMTTEMAAHDAEV 126 Query: 130 AEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVLGKVGSRRDE 189 AE R+F RLQ L+A I +GQA+GEIA R D +V+A F+V +GMRVLGK G + Sbjct: 127 AERSGRMFRRLQQLYAGAIVRGQASGEIAER-DEQVLARFLVCQIEGMRVLGKTGMHEAD 185 Query: 190 MLKDADLLMEML 201 ML D M +L Sbjct: 186 MLALVDSTMRIL 197 >ref|YP_001773898.1| TetR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA95403.1| transcriptional regulator, TetR family [Burkholderia cenocepacia MC0-3] Length = 198 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/193 (51%), Positives = 129/193 (66%), Gaps = 3/193 (1%) Query: 10 VGRPREFDLDEAVRRAMQIFWDRGFHDASLPDLLAGMQLSKGSFYKAFGDKKSVFLRALE 69 VGRPREF+L +A R AM +FWDRG+ ASLPDL+AG LS+GS YKAFGDKK++ L AL+ Sbjct: 7 VGRPREFELGDAARDAMDVFWDRGYEGASLPDLIAGTGLSRGSLYKAFGDKKALLLAALD 66 Query: 70 FYTDDGVRNVQEVLRSAPSP-KAAIRNALVRYADLSSGKKGVRGCFGVLTAAEMLPGDPD 128 Y DG++ ++L S P P K AIR++L+RYA LS G+ G RGC V E+ D D Sbjct: 67 LYMADGLKATADIL-SQPGPVKDAIRDSLLRYARLSVGEAGRRGCLAVAMTTELAARDAD 125 Query: 129 IAEVIKRLFSRLQALFAATIAKGQAAGEIANRSDPEVIAHFIVSHAQGMRVLGKVGSRRD 188 +AE R+F RLQ L+A I +GQA+GEI + D +V+A +V +GMRVLGK G Sbjct: 126 VAERTGRMFRRLQQLYAGAIVRGQASGEIPEQ-DEQVLARLLVCQVEGMRVLGKTGVPEH 184 Query: 189 EMLKDADLLMEML 201 +ML D M +L Sbjct: 185 DMLALVDRTMRIL 197