BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0004.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001795994.1| RNA-directed DNA polymerase, retrotranscript... 708 0.0 ref|ZP_07264735.1| RNA-directed DNA polymerase [Pseudomonas syri... 627 e-177 ref|YP_002799633.1| RNA-directed DNA polymerase [Azotobacter vin... 598 e-169 ref|YP_003197936.1| RNA-directed DNA polymerase (Reverse transcr... 561 e-157 ref|YP_003197497.1| RNA-directed DNA polymerase (Reverse transcr... 558 e-157 >ref|YP_001795994.1| RNA-directed DNA polymerase, retrotranscriptase [Cupriavidus taiwanensis] emb|CAP63785.1| RNA-directed DNA polymerase, retrotranscriptase [Cupriavidus taiwanensis LMG 19424] Length = 607 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/522 (66%), Positives = 399/522 (76%), Gaps = 5/522 (0%) Query: 7 HRNWEISSSPEGEQSSGRLGKAECRKPSTTVDEKSDVCTVPMNDLNKSDGSTPMLAEGPE 66 HRNWEIS P + + G GKA+ R P EKSD C VP ND N + P AE E Sbjct: 84 HRNWEISPVPTEQLAVGGSGKADGRTPDIDAGEKSDACVVPRNDPNNDAAAKPASAEDRE 143 Query: 67 GRRAAKGNSKHPPVPRTQSRTSASTRLDVIRELA----RRNRKTRFTALMHHVTRELLTE 122 GRRAAK N++ P PRTQSR+ AST L+ +RE A +K +FTALMHH+T LL + Sbjct: 144 GRRAAKRNAEQSPAPRTQSRSRASTGLNGVREAACAQKASGKKVQFTALMHHITPRLLID 203 Query: 123 SFRGLKHSAASGVDGVTWRDYEEGLDERIEVLWDAVQSGRYRALPSRRVYIPKINGKLRP 182 SF LK SAA+GVDGVTW DYEE L ERI LWDAVQ+GRYRALPSRRVYIPK +GK RP Sbjct: 204 SFMHLKKSAAAGVDGVTWHDYEECLVERIGKLWDAVQAGRYRALPSRRVYIPKADGKQRP 263 Query: 183 LGIAALEDKIVQHAVTTVLNAIYEVDFLGFSYGFREGRSQHQALDALWIGIHQKRVNWVL 242 LGIAALEDKIVQ AV TVL IYE DFLGFSYGFR GR QHQALDALW+G+H K+VNWVL Sbjct: 264 LGIAALEDKIVQQAVVTVLTPIYESDFLGFSYGFRPGRGQHQALDALWVGLHWKKVNWVL 323 Query: 243 DADIRSFFDTIDHGWMMQFLEHRMIADRRLLRLIRKWLTAGVVEGGLKSVARVGTPQGAV 302 DADIRSFFDT+DHGWMM+FLEHR IAD+RLLRLIRKWLTAGV+E G K+ RVGTPQGAV Sbjct: 324 DADIRSFFDTVDHGWMMRFLEHR-IADKRLLRLIRKWLTAGVIENGAKTEIRVGTPQGAV 382 Query: 303 ISPLLANIYLHYVFDLWTHQWRSKSARRDVIVVRYADDSVMGFETKSEALHFLDALRERM 362 ISPLLANIYLHYVFDLW +WR + A+ DVIVVRYADDSV+GFE +++A FL+AL+ R Sbjct: 383 ISPLLANIYLHYVFDLWLQRWRRRDAKGDVIVVRYADDSVVGFEAEADASRFLEALKARF 442 Query: 363 AKFGLSLNEEKTRVLEFGRYAAERRARRGQRRPETFDFLGFTHICAVTRINPHFTIRRVT 422 A+FGLSLNE+KTRVL+FGRYAA R R G RP+TFDFLGFTHICA R N F +RR+T Sbjct: 443 AQFGLSLNEQKTRVLQFGRYAASLRKRAGLGRPQTFDFLGFTHICATKRSNGGFIVRRLT 502 Query: 423 IASRLRATLSAIRHDLMKRRHAPIGETGVWLRRVMQGYLNYHAIPGNLKRLGMFRAEVCR 482 + R+RATL A+R L +RRH PI G WLRRVMQGY NYHA+PGN RL FR+ VCR Sbjct: 503 SSKRMRATLKALRQALYRRRHEPIAVVGTWLRRVMQGYFNYHAVPGNNLRLSRFRSGVCR 562 Query: 483 AWLRSLRRRSQRSRMTWERFRRFIGRYIPKVRARHPHPNPRY 524 AWL +LRRR Q RM+W RF R + Y+P VR HP+P R+ Sbjct: 563 AWLHALRRRGQYGRMSWARFLRRVAPYVPSVRVLHPYPTQRF 604 >ref|ZP_07264735.1| RNA-directed DNA polymerase [Pseudomonas syringae pv. syringae 642] Length = 598 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/525 (60%), Positives = 382/525 (72%), Gaps = 8/525 (1%) Query: 3 GNPSHRNWEISSSPEGEQSSGRLGKAECRKPSTTVDEKSDVCTVPMNDLNKSDGSTPMLA 62 G+P HRNWEIS+ P G Q+ G GKA+ R P+ EKSD V NK G ++ Sbjct: 72 GSPLHRNWEISAVP-GAQAPGGAGKAKSRNPAAYAAEKSDTSVVSEKPSNKGPGPAEIVE 130 Query: 63 EGPEGRRAAKGNSKHPPVPRTQSRTS-ASTRLDVIRELARRNRKTRFTALMHHVTRELLT 121 E R AKGN+ PPVPRTQSR S AS L+ +RE ARRN+ +FTAL+HH+T +LL Sbjct: 131 E----RDVAKGNTDRPPVPRTQSRISCASMGLEGVREAARRNKGMQFTALLHHITPQLLA 186 Query: 122 ESFRGLKHSAASGVDGVTWRDYEEGLDERIEVLWDAVQSGRYRALPSRRVYIPKINGKLR 181 +SF L+ AA GVDG++WRDYEEGL +R+ L + G +RA PSRRVYIPK +G+LR Sbjct: 187 QSFYALRRDAAVGVDGLSWRDYEEGLLQRVTELHGRLHKGAFRATPSRRVYIPKADGRLR 246 Query: 182 PLGIAALEDKIVQHAVTTVLNAIYEVDFLGFSYGFREGRSQHQALDALWIGIHQKRVNWV 241 PLGIA+LEDKIVQ AV TVLNAIYE DFLGFSYGFR GRSQH ALDAL + + ++VNW+ Sbjct: 247 PLGIASLEDKIVQQAVVTVLNAIYEEDFLGFSYGFRPGRSQHDALDALTVALKSQKVNWI 306 Query: 242 LDADIRSFFDTIDHGWMMQFLEHRMIADRRLLRLIRKWLTAGVVEGGLKSVARVGTPQGA 301 LDADI SFFD IDH WM+ FL HR IADRRLL LI KWL AGVVE G + A GTPQGA Sbjct: 307 LDADITSFFDEIDHEWMLMFLGHR-IADRRLLGLICKWLQAGVVEDGRRVAATKGTPQGA 365 Query: 302 VISPLLANIYLHYVFDLWTHQWRSKSARRDVIVVRYADDSVMGFETKSEALHFLDALRER 361 VISPLLANIYLHYV DLW QWR + AR DVIVVRYADDSV+GF TK +A FL L+ER Sbjct: 366 VISPLLANIYLHYVLDLWARQWRERHARGDVIVVRYADDSVVGFRTKVQAQQFLVQLQER 425 Query: 362 MAKFGLSLNEEKTRVLEFGRYAAERRARRGQRRPETFDFLGFTHICAVTRINPHFTIRRV 421 +A+FGLSLN KTR++EFGR+A R +RG R+PETFDFLGFTH C+V+R F + R+ Sbjct: 426 LARFGLSLNASKTRLIEFGRFAVTNRRKRGLRKPETFDFLGFTHCCSVSR-RGDFQVLRL 484 Query: 422 TIASRLRATLSAIRHDLMKRRHAPIGETGVWLRRVMQGYLNYHAIPGNLKRLGMFRAEVC 481 T+ R+RATL AIR +L +RRH + G WL+RV+ GY NYHA+PGNL RLG FR VC Sbjct: 485 TVKKRMRATLLAIREELSRRRHDFVRVQGQWLKRVVSGYFNYHAVPGNLIRLGGFRLAVC 544 Query: 482 RAWLRSLRRRSQRSRMTWERFRRFIGRYIPKVRARHPHPNPRYTS 526 R W ++L+RRSQR+R+ W R+ R YIP+ R HP+P R+ S Sbjct: 545 RLWRQALKRRSQRNRLQWSRYGRLADLYIPRPRNAHPYPEDRFAS 589 >ref|YP_002799633.1| RNA-directed DNA polymerase [Azotobacter vinelandii DJ] gb|ACO78658.1| RNA-directed DNA polymerase [Azotobacter vinelandii DJ] Length = 591 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 308/525 (58%), Positives = 375/525 (71%), Gaps = 8/525 (1%) Query: 3 GNPSHRNWEISSSPEGEQSSGRLGKAECRKPSTTVDEKSDVCTVPMNDLNKSDGSTPMLA 62 G+PSHRNWEIS P G + G GKA+ P+ V EKSD VP NK G++P A Sbjct: 72 GSPSHRNWEISVMP-GAHALGGAGKAKSCNPAVYVAEKSDTSVVPEKPSNK--GASP--A 126 Query: 63 EGPEGRRAAKGNSKHPPVPRTQSRTSA-STRLDVIRELARRNRKTRFTALMHHVTRELLT 121 E E R AKGN+ P PRT SR+S S L+ +RE ARR++ +FTAL+HH+T +LL Sbjct: 127 ERVEERGVAKGNTDKNPTPRTLSRSSCVSMGLEGVREAARRDKGMQFTALLHHITPQLLA 186 Query: 122 ESFRGLKHSAASGVDGVTWRDYEEGLDERIEVLWDAVQSGRYRALPSRRVYIPKINGKLR 181 +SF L+ AA GVDG++WR+YEE L +R+ L + G YRA PSRRVYIPK +G+ R Sbjct: 187 QSFYALRRDAAVGVDGMSWREYEEDLHQRVGKLHARLHRGAYRATPSRRVYIPKADGRQR 246 Query: 182 PLGIAALEDKIVQHAVTTVLNAIYEVDFLGFSYGFREGRSQHQALDALWIGIHQKRVNWV 241 PLGIA+LEDKIVQ AV TVLNAIYE DF GFSYGFR GRSQH ALDAL + + ++VNW+ Sbjct: 247 PLGIASLEDKIVQQAVVTVLNAIYEEDFQGFSYGFRPGRSQHDALDALTVALKSQKVNWI 306 Query: 242 LDADIRSFFDTIDHGWMMQFLEHRMIADRRLLRLIRKWLTAGVVEGGLKSVARVGTPQGA 301 LDADI SFFD IDH WM+ FL HR IADRR+L LI KWL AGV+E G + A GTPQGA Sbjct: 307 LDADITSFFDEIDHEWMLMFLGHR-IADRRMLGLICKWLQAGVMEDGRRLAATKGTPQGA 365 Query: 302 VISPLLANIYLHYVFDLWTHQWRSKSARRDVIVVRYADDSVMGFETKSEALHFLDALRER 361 VISPLLANIYLHYV DLW QWR + AR ++IVVRYADDSV+GF T+ +A FL L+ER Sbjct: 366 VISPLLANIYLHYVLDLWARQWRQRHARGEMIVVRYADDSVVGFRTQWQAQRFLVQLQER 425 Query: 362 MAKFGLSLNEEKTRVLEFGRYAAERRARRGQRRPETFDFLGFTHICAVTRINPHFTIRRV 421 MA+FGLSLN KTR++EFGR+A + R R+G +PETFDFLGFTH C+ R + F I R+ Sbjct: 426 MARFGLSLNASKTRLIEFGRFAVQNRRRQGLGKPETFDFLGFTHCCSTNR-SGGFQILRL 484 Query: 422 TIASRLRATLSAIRHDLMKRRHAPIGETGVWLRRVMQGYLNYHAIPGNLKRLGMFRAEVC 481 T+ R+RATL AIR L +RRH PI G WL V+ GY NYHA+PGNL RL FR VC Sbjct: 485 TVKKRMRATLQAIRIALNRRRHEPIRVVGQWLGSVVGGYFNYHAVPGNLIRLDGFRVAVC 544 Query: 482 RAWLRSLRRRSQRSRMTWERFRRFIGRYIPKVRARHPHPNPRYTS 526 R W ++L+RRSQR+R+ W R+ R YIP+ R HP+P R+ S Sbjct: 545 RLWRQALKRRSQRNRLQWSRYGRLADLYIPRPRTAHPYPEERFAS 589 >ref|YP_003197936.1| RNA-directed DNA polymerase (Reverse transcriptase) [Desulfohalobium retbaense DSM 5692] gb|ACV68358.1| RNA-directed DNA polymerase (Reverse transcriptase) [Desulfohalobium retbaense DSM 5692] Length = 603 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 283/522 (54%), Positives = 363/522 (69%), Gaps = 4/522 (0%) Query: 3 GNPSHRNWEISSSPEGEQSSGRLGKAECRKPSTTVDEKSDVCTVPMNDLNKSDGSTPMLA 62 GN N E+ +P + GR GKA +KP V KSD C VP LNK GS + A Sbjct: 80 GNSLRGNREVPGTPSPDGGDGRSGKAGGQKPDKHVSGKSDGCIVPGKPLNKGMGS--LSA 137 Query: 63 EGPEGRRAAKGNSKHPPVPRTQSRTSASTRLDVIRELARRNRKTRFTALMHHVTRELLTE 122 E EGRR KGN++ RTQSRT+AS L +R++AR+++ RFTAL+HHV+ ++L + Sbjct: 138 EAVEGRRPTKGNARQAVAVRTQSRTAASIGLQRVRDMARKDKDARFTALLHHVSIDMLGQ 197 Query: 123 SFRGLKHSAASGVDGVTWRDYEEGLDERIEVLWDAVQSGRYRALPSRRVYIPKINGKLRP 182 SFR LK A GVDG+T +YE+GL ER++ L V G YRA PS+R++IPK +G RP Sbjct: 198 SFRELKREATPGVDGLTCAEYEDGLRERLKELHARVHRGSYRAQPSKRIHIPKPDGHKRP 257 Query: 183 LGIAALEDKIVQHAVTTVLNAIYEVDFLGFSYGFREGRSQHQALDALWIGIHQKRVNWVL 242 +GIAALEDKIVQHAV VL+AIYE DFLGFSYGFR R H ALDAL +G+ ++V+WVL Sbjct: 258 IGIAALEDKIVQHAVGKVLSAIYEEDFLGFSYGFRPRRGAHDALDALNVGLTHRKVSWVL 317 Query: 243 DADIRSFFDTIDHGWMMQFLEHRMIADRRLLRLIRKWLTAGVVEGGLKSVARVGTPQGAV 302 DADI+ FFDTI H WM++FLEHR IAD R+LRL+RKWL GV E G+ S +GTPQGAV Sbjct: 318 DADIQGFFDTISHEWMIRFLEHR-IADPRILRLVRKWLRVGVSEDGVWSQTSMGTPQGAV 376 Query: 303 ISPLLANIYLHYVFDLWTHQWRSKSARRDVIVVRYADDSVMGFETKSEALHFLDALRERM 362 ISP+L NIYLHYV D W H R + AR D+I+VRYADD V+GF+ + EA FL L+ R+ Sbjct: 377 ISPILGNIYLHYVLDQWVHH-RRRHARGDIIIVRYADDYVLGFQYRHEAERFLTDLKARL 435 Query: 363 AKFGLSLNEEKTRVLEFGRYAAERRARRGQRRPETFDFLGFTHICAVTRINPHFTIRRVT 422 +FGLSL+ EKTR++EFGR+A E R +RGQ +PETFDFLGFTH+C +TRI F +RR T Sbjct: 436 DRFGLSLHPEKTRLIEFGRFATESRRKRGQGKPETFDFLGFTHMCGITRIRKRFLVRRKT 495 Query: 423 IASRLRATLSAIRHDLMKRRHAPIGETGVWLRRVMQGYLNYHAIPGNLKRLGMFRAEVCR 482 + RLRA L ++ L R H PI + G WL+RV+ GY YHA+PGNL + FR ++ R Sbjct: 496 VKKRLRAALKRVKTILRSRMHDPINDVGEWLQRVLLGYYRYHAVPGNLDAMRAFRDDLVR 555 Query: 483 AWLRSLRRRSQRSRMTWERFRRFIGRYIPKVRARHPHPNPRY 524 W + LRRR Q+ R+ W + + R+I + R HP+PN R+ Sbjct: 556 YWYKVLRRRGQKRRINWRGYGPIVKRWISRPRVMHPYPNERF 597 >ref|YP_003197497.1| RNA-directed DNA polymerase (Reverse transcriptase) [Desulfohalobium retbaense DSM 5692] gb|ACV67919.1| RNA-directed DNA polymerase (Reverse transcriptase) [Desulfohalobium retbaense DSM 5692] Length = 603 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 282/522 (54%), Positives = 362/522 (69%), Gaps = 4/522 (0%) Query: 3 GNPSHRNWEISSSPEGEQSSGRLGKAECRKPSTTVDEKSDVCTVPMNDLNKSDGSTPMLA 62 GN N E+ +P + GR GKA +KP V KSD C VP LNK GS + A Sbjct: 80 GNSLRGNREVPGTPSPDGGDGRSGKAGGQKPDKHVSGKSDGCIVPGKPLNKGMGS--LSA 137 Query: 63 EGPEGRRAAKGNSKHPPVPRTQSRTSASTRLDVIRELARRNRKTRFTALMHHVTRELLTE 122 E EGRR KGN++ RTQSRT+AS L +R++AR+++ RFTAL+HHV+ ++L + Sbjct: 138 EAVEGRRPTKGNARQAVAVRTQSRTAASIGLQRVRDMARKDKDARFTALLHHVSIDMLGQ 197 Query: 123 SFRGLKHSAASGVDGVTWRDYEEGLDERIEVLWDAVQSGRYRALPSRRVYIPKINGKLRP 182 SFR LK A GVDG+T +YE+GL E ++ L V G YRA PS+R++IPK +G RP Sbjct: 198 SFRELKREATPGVDGLTCAEYEDGLREGLKELHARVHRGSYRAQPSKRIHIPKPDGHKRP 257 Query: 183 LGIAALEDKIVQHAVTTVLNAIYEVDFLGFSYGFREGRSQHQALDALWIGIHQKRVNWVL 242 +GIAALEDKIVQHAV VL+AIYE DFLGFSYGFR R H ALDAL +G+ ++V+WVL Sbjct: 258 IGIAALEDKIVQHAVGKVLSAIYEEDFLGFSYGFRPRRGAHDALDALNVGLTHRKVSWVL 317 Query: 243 DADIRSFFDTIDHGWMMQFLEHRMIADRRLLRLIRKWLTAGVVEGGLKSVARVGTPQGAV 302 DADI+ FFDTI H WM++FLEHR IAD R+LRL+RKWL GV E G+ S +GTPQGAV Sbjct: 318 DADIQGFFDTISHEWMIRFLEHR-IADPRILRLVRKWLRVGVSEDGVWSQTSMGTPQGAV 376 Query: 303 ISPLLANIYLHYVFDLWTHQWRSKSARRDVIVVRYADDSVMGFETKSEALHFLDALRERM 362 ISP+L NIYLHYV D W H R + AR D+I+VRYADD V+GF+ + EA FL L+ R+ Sbjct: 377 ISPILGNIYLHYVLDQWVHH-RRRHARGDIIIVRYADDYVLGFQYRHEAERFLTDLKARL 435 Query: 363 AKFGLSLNEEKTRVLEFGRYAAERRARRGQRRPETFDFLGFTHICAVTRINPHFTIRRVT 422 +FGLSL+ EKTR++EFGR+A E R +RGQ +PETFDFLGFTH+C +TRI F +RR T Sbjct: 436 DRFGLSLHPEKTRLIEFGRFATESRRKRGQGKPETFDFLGFTHMCGITRIRKRFLVRRKT 495 Query: 423 IASRLRATLSAIRHDLMKRRHAPIGETGVWLRRVMQGYLNYHAIPGNLKRLGMFRAEVCR 482 + RLRA L ++ L R H PI + G WL+RV+ GY YHA+PGNL + FR ++ R Sbjct: 496 VKKRLRAALKRVKTILRSRMHDPINDVGEWLQRVLLGYYRYHAVPGNLDAMRAFRDDLVR 555 Query: 483 AWLRSLRRRSQRSRMTWERFRRFIGRYIPKVRARHPHPNPRY 524 W + LRRR Q+ R+ W + + R+I + R HP+PN R+ Sbjct: 556 YWYKVLRRRGQKRRINWRGYGPIVKRWISRPRVMHPYPNERF 597