BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0011.p (553 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242795.1| signal transduction histidine kinase [Bradyr... 901 0.0 ref|NP_768101.1| hypothetical protein blr1461 [Bradyrhizobium ja... 883 0.0 ref|YP_001203197.1| signal transduction histidine kinase [Bradyr... 872 0.0 ref|YP_578762.1| signal transduction histidine kinase [Nitrobact... 838 0.0 ref|YP_319379.1| HWE histidine kinase [Nitrobacter winogradskyi ... 832 0.0 >ref|YP_001242795.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ38889.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 552 Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/552 (78%), Positives = 488/552 (88%) Query: 1 VVRLGFIVALIALIGVLLSGLAAYRVHDQELAIDGIALARAIDVHASLVQDRLTERELLA 60 ++RLG I+ +IALIG LSGLAAYRVHDQELAID IALARAIDVHASLVQDRLTERELLA Sbjct: 1 MLRLGVIIGVIALIGTALSGLAAYRVHDQELAIDRIALARAIDVHASLVQDRLTERELLA 60 Query: 61 RVASGLFRAPSMVKANMLQPLRSAIYAFKTDFVVAAWIARLKPDELAAAEAELKANGFTN 120 RVASGLFRAPS++KANML+PLRS+IYAFKTDFVVA+WIARL+PDEL A+AEL+ GF N Sbjct: 61 RVASGLFRAPSVIKANMLEPLRSSIYAFKTDFVVASWIARLRPDELPIAQAELRQAGFPN 120 Query: 121 PTIRDFDDQALDLKALDKPINVLMDVEPRNPETLSIPGRAFDRHSVVGPMLAQAMANAKP 180 PTIR++DD+ LD L PI+VLMD+EPRN +TL +PG A DR +VGPML +AMA KP Sbjct: 121 PTIRNYDDKPLDAATLTGPIDVLMDLEPRNADTLKLPGVALDRQPIVGPMLTRAMAEGKP 180 Query: 181 VASDPVPLLRQNGPVGVVLAAPVFQEGASEPAGFITFSYELSSLMLTNDDSSLFAVALKD 240 VASDP PLLR NGP+G+VLAAPV +GA+ PAGF+TFSYE+ L+LTNDD SLF+VALKD Sbjct: 181 VASDPTPLLRANGPIGIVLAAPVVPQGATAPAGFVTFSYEIGPLLLTNDDLSLFSVALKD 240 Query: 241 PRDSNDEFTANEQGIVTSRAVRQDGPVPSMVRTVTFGGRDWSLDYYAKSNATVRAQQTAT 300 PR+++DE AN+QG V+ R D P PS RTVTFG DWSL YYAKSN+ RAQQTA Sbjct: 241 PRNASDELVANDQGAVSGRTRGADAPAPSSTRTVTFGNHDWSLVYYAKSNSVRRAQQTAA 300 Query: 301 IVAAIGLALTGIVCGLFGYVAYNNLRLSREIEVRIGFERRLTAVIDELNHRVKNILAVIQ 360 IV IGLALTGI+CGLFGYVAYNNLRLSREI+VRIGFERRLTAVIDELNHRVKNILAVIQ Sbjct: 301 IVGVIGLALTGIICGLFGYVAYNNLRLSREIQVRIGFERRLTAVIDELNHRVKNILAVIQ 360 Query: 361 SIVTRTLRHGADIDVARELLIGRIHAMSNVVTLLSESQWQGVKLKGLFESRSIPHADRIA 420 SIVTRTLRHG+DIDVARELLIGRIHAMSNVVTLLSESQWQGV+L+GLFESR+IPHADRIA Sbjct: 361 SIVTRTLRHGSDIDVARELLIGRIHAMSNVVTLLSESQWQGVQLRGLFESRAIPHADRIA 420 Query: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVANWEVVGDDADVVFHFRWE 480 V GPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHI A W+V G++ + VF FRWE Sbjct: 421 VTGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHITAKWDVTGEEPNAVFQFRWE 480 Query: 481 EFNTSQATRRVDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELTAPMDTVVDMTERDR 540 EFNTS+ATRR DSDFGLILLDRVAPEALGGT+KR+FT+ SYVYELTAPM+TVVD+TERDR Sbjct: 481 EFNTSEATRRPDSDFGLILLDRVAPEALGGTSKRFFTEASYVYELTAPMETVVDITERDR 540 Query: 541 TEQFSAPLRPVK 552 TEQFSAP+ P + Sbjct: 541 TEQFSAPVHPSR 552 >ref|NP_768101.1| hypothetical protein blr1461 [Bradyrhizobium japonicum USDA 110] dbj|BAC46726.1| blr1461 [Bradyrhizobium japonicum USDA 110] Length = 552 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/552 (78%), Positives = 485/552 (87%) Query: 1 VVRLGFIVALIALIGVLLSGLAAYRVHDQELAIDGIALARAIDVHASLVQDRLTERELLA 60 +VRLGFI+ IAL+G +LSGLAAYRVHDQELA+D IALARAIDVHASLVQDRLTERELLA Sbjct: 1 MVRLGFIIGFIALLGAMLSGLAAYRVHDQELALDRIALARAIDVHASLVQDRLTERELLA 60 Query: 61 RVASGLFRAPSMVKANMLQPLRSAIYAFKTDFVVAAWIARLKPDELAAAEAELKANGFTN 120 RVASGLFRAPS++K NML+PLRSAIYAFKTDFVVA W+ARL+P+ELAAA+A + A GF Sbjct: 61 RVASGLFRAPSVLKPNMLEPLRSAIYAFKTDFVVAGWVARLQPNELAAAQAAIAAAGFPK 120 Query: 121 PTIRDFDDQALDLKALDKPINVLMDVEPRNPETLSIPGRAFDRHSVVGPMLAQAMANAKP 180 P IRD+ D+ +D +L +PI+VLMD+EPR+ ET +PGR++DR V MLA+A + Sbjct: 121 PQIRDYGDKPIDPASLTQPIDVLMDLEPRSDETKGLPGRSYDRDPVRSAMLARARIEKRS 180 Query: 181 VASDPVPLLRQNGPVGVVLAAPVFQEGASEPAGFITFSYELSSLMLTNDDSSLFAVALKD 240 VASDPVPLLR NGPVGV++AAPV EGA+EP GFITFSYEL+SLMLTNDD SLFAVALKD Sbjct: 181 VASDPVPLLRNNGPVGVIVAAPVIPEGATEPVGFITFSYELASLMLTNDDMSLFAVALKD 240 Query: 241 PRDSNDEFTANEQGIVTSRAVRQDGPVPSMVRTVTFGGRDWSLDYYAKSNATVRAQQTAT 300 PR E AN+QGIV++R DGP PS RTV+FGGRDW L YYAK+N+ RA+QTA Sbjct: 241 PRKDGGELVANDQGIVSTRMTAADGPAPSATRTVSFGGRDWQLGYYAKTNSARRAEQTAI 300 Query: 301 IVAAIGLALTGIVCGLFGYVAYNNLRLSREIEVRIGFERRLTAVIDELNHRVKNILAVIQ 360 IVAAIG A+T +VCGLFGYVAYNNLRLSREI+VRIGFERRLTAVIDELNHRVKNILAVIQ Sbjct: 301 IVAAIGFAITAMVCGLFGYVAYNNLRLSREIQVRIGFERRLTAVIDELNHRVKNILAVIQ 360 Query: 361 SIVTRTLRHGADIDVARELLIGRIHAMSNVVTLLSESQWQGVKLKGLFESRSIPHADRIA 420 SIVTRTLRHGADID ARELLIGRIHAMSNVV+LLSESQWQGVKLKGLFE+R+IPHADRIA Sbjct: 361 SIVTRTLRHGADIDGARELLIGRIHAMSNVVSLLSESQWQGVKLKGLFEARAIPHADRIA 420 Query: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVANWEVVGDDADVVFHFRWE 480 V GPDI VSARAAQSLSLLFFELASHSDEGLSLVGKHPHI ANW V G+ D VFHFRWE Sbjct: 421 VTGPDIAVSARAAQSLSLLFFELASHSDEGLSLVGKHPHITANWTVTGEGTDEVFHFRWE 480 Query: 481 EFNTSQATRRVDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELTAPMDTVVDMTERDR 540 EFNTS+ATRR DSDFGLILLDRVAPEALGGTAKRYFTDVSYVYEL APM+TVVDM+ERDR Sbjct: 481 EFNTSEATRRPDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELIAPMETVVDMSERDR 540 Query: 541 TEQFSAPLRPVK 552 T++ SAP+RPV+ Sbjct: 541 TDKLSAPVRPVR 552 >ref|YP_001203197.1| signal transduction histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL74960.1| putative signal transduction histidine kinase with Chase domain [Bradyrhizobium sp. ORS 278] Length = 551 Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/552 (78%), Positives = 486/552 (88%), Gaps = 1/552 (0%) Query: 1 VVRLGFIVALIALIGVLLSGLAAYRVHDQELAIDGIALARAIDVHASLVQDRLTERELLA 60 ++RLG I+ +IAL+G LSGLAAYRVHDQELA+D IALARAIDVHASLVQDRLTERELLA Sbjct: 1 MLRLGVIIGVIALLGTALSGLAAYRVHDQELALDRIALARAIDVHASLVQDRLTERELLA 60 Query: 61 RVASGLFRAPSMVKANMLQPLRSAIYAFKTDFVVAAWIARLKPDELAAAEAELKANGFTN 120 RVASGLFRAPS++KANML+PLRS+IYAFKTDFVVA+WIARL+PDEL A+AEL GF+N Sbjct: 61 RVASGLFRAPSVIKANMLEPLRSSIYAFKTDFVVASWIARLRPDELPVAQAELHQAGFSN 120 Query: 121 PTIRDFDDQALDLKALDKPINVLMDVEPRNPETLSIPGRAFDRHSVVGPMLAQAMANAKP 180 PTIR +DD L +D PI+VLMD+EPRN ET +PGRA DR +VGPMLA+AMA KP Sbjct: 121 PTIRSYDDTPLG-PNVDHPIDVLMDLEPRNAETSRLPGRALDRQPIVGPMLARAMAEGKP 179 Query: 181 VASDPVPLLRQNGPVGVVLAAPVFQEGASEPAGFITFSYELSSLMLTNDDSSLFAVALKD 240 VASDP PLLR +GP G+VLAAPV +GA+ PAGF+TFSYE+ L+LTNDD SLF+VALKD Sbjct: 180 VASDPTPLLRPDGPAGIVLAAPVVPQGATAPAGFVTFSYEIGPLLLTNDDLSLFSVALKD 239 Query: 241 PRDSNDEFTANEQGIVTSRAVRQDGPVPSMVRTVTFGGRDWSLDYYAKSNATVRAQQTAT 300 PR+++DE AN+QG VT+R D P PS RTV FG DWSL YYAKSNA RAQQTA Sbjct: 240 PRNASDELVANDQGAVTTRTRGPDDPAPSSTRTVAFGNHDWSLVYYAKSNAARRAQQTAA 299 Query: 301 IVAAIGLALTGIVCGLFGYVAYNNLRLSREIEVRIGFERRLTAVIDELNHRVKNILAVIQ 360 IV IGLALTGI+ GLFGYVAYNNLRLSREI+VRIGFERRLTAVIDELNHRVKNILAVIQ Sbjct: 300 IVGVIGLALTGIIGGLFGYVAYNNLRLSREIQVRIGFERRLTAVIDELNHRVKNILAVIQ 359 Query: 361 SIVTRTLRHGADIDVARELLIGRIHAMSNVVTLLSESQWQGVKLKGLFESRSIPHADRIA 420 SIVTRTLRHG+DIDVARELLIGRIHAMSNVVTLLSESQWQGV+L+GLFE+R+IPHA+RIA Sbjct: 360 SIVTRTLRHGSDIDVARELLIGRIHAMSNVVTLLSESQWQGVQLRGLFEARAIPHAERIA 419 Query: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVANWEVVGDDADVVFHFRWE 480 V+GPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHI A WEV GD+ + VF+FRWE Sbjct: 420 VSGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHITAKWEVTGDEPNAVFNFRWE 479 Query: 481 EFNTSQATRRVDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELTAPMDTVVDMTERDR 540 E NTS+ATRR DSDFGLILLDRVAPEALGG +KR+FT+ SYVYELTAPM+TVVDMTERDR Sbjct: 480 ERNTSEATRRPDSDFGLILLDRVAPEALGGASKRFFTEGSYVYELTAPMETVVDMTERDR 539 Query: 541 TEQFSAPLRPVK 552 TEQFSAP+RP K Sbjct: 540 TEQFSAPVRPPK 551 >ref|YP_578762.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE64302.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 556 Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/551 (74%), Positives = 473/551 (85%) Query: 1 VVRLGFIVALIALIGVLLSGLAAYRVHDQELAIDGIALARAIDVHASLVQDRLTERELLA 60 +VRLGF++ L+A+IGVLLSGLAA+R ++QELAID IAL+RAIDVHASLVQ+RL ERELLA Sbjct: 1 MVRLGFVIGLVAVIGVLLSGLAAWRGYEQELAIDRIALSRAIDVHASLVQERLIERELLA 60 Query: 61 RVASGLFRAPSMVKANMLQPLRSAIYAFKTDFVVAAWIARLKPDELAAAEAELKANGFTN 120 RVASGLFR+PS V+ANML PLR++IYAFKTDFV A W+ARL P EL A+A L A GF N Sbjct: 61 RVASGLFRSPSAVRANMLHPLRASIYAFKTDFVTAGWVARLHPGELPQADAALAAAGFPN 120 Query: 121 PTIRDFDDQALDLKALDKPINVLMDVEPRNPETLSIPGRAFDRHSVVGPMLAQAMANAKP 180 P IR FDD DL +LDKPI+V+MDVEP+N ET+ PGR+ DR ++GPM A+AM P Sbjct: 121 PQIRSFDDTPRDLHSLDKPIDVVMDVEPQNAETVVFPGRSLDRDPILGPMFARAMQTRTP 180 Query: 181 VASDPVPLLRQNGPVGVVLAAPVFQEGASEPAGFITFSYELSSLMLTNDDSSLFAVALKD 240 V SDP+ LL +GP+G+V+A PVFQEG+ AGFITFSY+L+SLMLTND+ SLF+V LKD Sbjct: 181 VVSDPIHLLMPDGPIGLVIATPVFQEGSETAAGFITFSYKLASLMLTNDELSLFSVVLKD 240 Query: 241 PRDSNDEFTANEQGIVTSRAVRQDGPVPSMVRTVTFGGRDWSLDYYAKSNATVRAQQTAT 300 PR+ E A++ G VTSR R PVP ++RTV FGGRDWSL YY K+NA RAQ+ A Sbjct: 241 PRNPRSELIADDSGNVTSRLRRPADPVPLVLRTVIFGGRDWSLGYYPKNNAIHRAQKLAA 300 Query: 301 IVAAIGLALTGIVCGLFGYVAYNNLRLSREIEVRIGFERRLTAVIDELNHRVKNILAVIQ 360 +VAAIGLALT I+CGLFGYVAYNNLRLSREI+VRIGFERRLTAVIDELNHRVKNILAVIQ Sbjct: 301 VVAAIGLALTSIICGLFGYVAYNNLRLSREIQVRIGFERRLTAVIDELNHRVKNILAVIQ 360 Query: 361 SIVTRTLRHGADIDVARELLIGRIHAMSNVVTLLSESQWQGVKLKGLFESRSIPHADRIA 420 SIVTRTLRHG+DI+VARELLIGRIHAMSNVV+LLSESQWQGVKL+GLFE+R+IPH DRIA Sbjct: 361 SIVTRTLRHGSDIEVARELLIGRIHAMSNVVSLLSESQWQGVKLRGLFEARAIPHTDRIA 420 Query: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVANWEVVGDDADVVFHFRWE 480 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIV +W V G+ ++ +F FRWE Sbjct: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVVHWAVEGEGSEAMFRFRWE 480 Query: 481 EFNTSQATRRVDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELTAPMDTVVDMTERDR 540 EFNTS ATRR DSDFG+ILLDRVAPEALGG +KRYFT+ SYVYEL APM+TVVD+TERDR Sbjct: 481 EFNTSAATRREDSDFGIILLDRVAPEALGGVSKRYFTEASYVYELAAPMETVVDVTERDR 540 Query: 541 TEQFSAPLRPV 551 T Q SAP+RPV Sbjct: 541 TTQISAPIRPV 551 >ref|YP_319379.1| HWE histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA06027.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 552 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/550 (72%), Positives = 470/550 (85%) Query: 1 VVRLGFIVALIALIGVLLSGLAAYRVHDQELAIDGIALARAIDVHASLVQDRLTERELLA 60 +VRLGF++ +A+IG+ LSGLAA+R HDQELAID IAL+RAIDVHASLVQ+RL +RELLA Sbjct: 1 MVRLGFVIGFVAVIGIFLSGLAAWRAHDQELAIDRIALSRAIDVHASLVQERLIQRELLA 60 Query: 61 RVASGLFRAPSMVKANMLQPLRSAIYAFKTDFVVAAWIARLKPDELAAAEAELKANGFTN 120 RVASGLFR+PS ++ANML PLR++IYAF+TDFV+AAW+ARL+ E A L GF N Sbjct: 61 RVASGLFRSPSAMQANMLHPLRASIYAFETDFVLAAWVARLESGEFPQARDALANAGFPN 120 Query: 121 PTIRDFDDQALDLKALDKPINVLMDVEPRNPETLSIPGRAFDRHSVVGPMLAQAMANAKP 180 P IR FDD + DL +LDKPI+V+MDVEP+N +T + PGR+ D+H ++GPM A+AM Sbjct: 121 PQIRSFDDASRDLSSLDKPIDVIMDVEPQNAQTSAFPGRSLDQHPILGPMFARAMQTKTS 180 Query: 181 VASDPVPLLRQNGPVGVVLAAPVFQEGASEPAGFITFSYELSSLMLTNDDSSLFAVALKD 240 V SDP+ L+ ++GP+G+V+A PVFQE + AGFITFSY+L+SLMLTND+ SLF+V LKD Sbjct: 181 VVSDPLNLMDRDGPIGLVIATPVFQENSGTAAGFITFSYKLASLMLTNDELSLFSVVLKD 240 Query: 241 PRDSNDEFTANEQGIVTSRAVRQDGPVPSMVRTVTFGGRDWSLDYYAKSNATVRAQQTAT 300 PR+ E A++ G VTSR + P P + RTVTFGGRDWSL YYAK+NA+ RAQ+ A Sbjct: 241 PRNPALELVADDSGDVTSRPGQTADPAPPVFRTVTFGGRDWSLGYYAKTNASHRAQKLAA 300 Query: 301 IVAAIGLALTGIVCGLFGYVAYNNLRLSREIEVRIGFERRLTAVIDELNHRVKNILAVIQ 360 +VAAIGLALT I+CGLFGYVAYNNLRLSREI+VRIGFERRLTAVIDELNHRVKNILAVIQ Sbjct: 301 VVAAIGLALTSIICGLFGYVAYNNLRLSREIQVRIGFERRLTAVIDELNHRVKNILAVIQ 360 Query: 361 SIVTRTLRHGADIDVARELLIGRIHAMSNVVTLLSESQWQGVKLKGLFESRSIPHADRIA 420 SIVTRTLRHG+DI+VARELLIGRIHAMSNVV+LLSESQWQGVKL+GLFE+R+IPH DRIA Sbjct: 361 SIVTRTLRHGSDIEVARELLIGRIHAMSNVVSLLSESQWQGVKLRGLFEARAIPHVDRIA 420 Query: 421 VNGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVANWEVVGDDADVVFHFRWE 480 ++GPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIV NWEV G+ + +F FRWE Sbjct: 421 IHGPDITVSARAAQSLSLLFFELASHSDEGLSLVGKHPHIVVNWEVEGEGEEALFRFRWE 480 Query: 481 EFNTSQATRRVDSDFGLILLDRVAPEALGGTAKRYFTDVSYVYELTAPMDTVVDMTERDR 540 EFNTS ATRR DSDFG+ILLDRVAPEALGG +KRYFT+VSYVYEL AP+DTVVD+TERDR Sbjct: 481 EFNTSAATRREDSDFGIILLDRVAPEALGGISKRYFTEVSYVYELAAPIDTVVDLTERDR 540 Query: 541 TEQFSAPLRP 550 T Q S PL+P Sbjct: 541 TMQISTPLKP 550