BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0008.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07027315.1| conserved hypothetical protein [Afipia sp. 1N... 483 e-134 ref|NP_768194.1| hypothetical protein blr1554 [Bradyrhizobium ja... 473 e-131 ref|YP_001243276.1| hypothetical protein BBta_7518 [Bradyrhizobi... 467 e-129 ref|YP_002419351.1| hypothetical protein Mchl_0488 [Methylobacte... 383 e-104 ref|YP_002961598.1| hypothetical protein MexAM1_META1p0373 [meth... 383 e-104 >ref|ZP_07027315.1| conserved hypothetical protein [Afipia sp. 1NLS2] gb|EFI51071.1| conserved hypothetical protein [Afipia sp. 1NLS2] Length = 354 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 269/329 (81%), Gaps = 1/329 (0%) Query: 12 VLFCVVAARSAEAHVKWFCAYDVAGQPRGLENVLCLDFELLLGVAVFWLFAGCLIEPTSL 71 VLF + SA AHVKWFCAY+VAGQP GLENVLC DFE+L+ VA+ WLFAGCLIE TS+ Sbjct: 26 VLFGAIGTESASAHVKWFCAYNVAGQPEGLENVLCQDFEILVFVAIVWLFAGCLIERTSV 85 Query: 72 GDATIRVMDRITEGLRLRTELMMRAVCAFFFISIWAVGGILLTPELKTTSPYVGALQLAI 131 GDA +R MDR+T GL++ TEL++RA FFF+S+WA+GGI+LTPELK+TS +G +QL I Sbjct: 86 GDAMLRSMDRVTSGLQVNTELIVRATVFFFFVSLWAIGGIILTPELKSTSAIIGPIQLVI 145 Query: 132 AAGMLSRRTLPLSAAGMVVLFGIGVRDYGVFHLADYPIFLGVAAYLALVGLNKDLFGIRP 191 A +LSRRTLP+SA G+ LFGI V DYG+FHLADYPIFLG+AAYLAL GL K FGI P Sbjct: 146 IACLLSRRTLPISALGIATLFGIAVHDYGIFHLADYPIFLGIAAYLALTGLQKKFFGIEP 205 Query: 192 IDVMRYAAAVTLMWASVEKWAYPEWSFPLLIEHSAMTLGFDNEFYMRAAGMVEFTLAFAL 251 IDVMRYA A+TLMWASVEKWAYP+WSFP+ + H +T GFD +FYMRAAG+VEFTLAFAL Sbjct: 206 IDVMRYATAITLMWASVEKWAYPQWSFPIFVTHPGITFGFDQDFYMRAAGVVEFTLAFAL 265 Query: 252 IWTPLIRRCAATVLTGMFISACFEFGKIDTIGHSAIIAVLLAIVADN-KVLPRDRRAPWL 310 +WTPL+RRCAA +L GMFI+ACFEFGKID IGHS IIAVL AI+ADN +V DRR P L Sbjct: 266 LWTPLVRRCAAAILAGMFIAACFEFGKIDLIGHSGIIAVLFAIIADNRRVAENDRRVPIL 325 Query: 311 APVALGAALSVTLFVYYFGHAAIFKTSVL 339 AP AAL+ TLFVYY GHA +F T++L Sbjct: 326 APATFCAALATTLFVYYVGHAYLFSTTIL 354 >ref|NP_768194.1| hypothetical protein blr1554 [Bradyrhizobium japonicum USDA 110] dbj|BAC46819.1| blr1554 [Bradyrhizobium japonicum USDA 110] Length = 353 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 244/337 (72%), Positives = 279/337 (82%) Query: 3 SFFATCLAAVLFCVVAARSAEAHVKWFCAYDVAGQPRGLENVLCLDFELLLGVAVFWLFA 62 S FA + A+ F + + A AHVKWFCAYD AGQPR LENVLC DFELLL +A+ W F+ Sbjct: 17 SLFARSIVALSFWFLGTQGASAHVKWFCAYDAAGQPRCLENVLCQDFELLLALALLWFFS 76 Query: 63 GCLIEPTSLGDATIRVMDRITEGLRLRTELMMRAVCAFFFISIWAVGGILLTPELKTTSP 122 GC++E TSL + R ++R T+GLRL TE ++RAVC FFFIS+WAVGGILLTPELKTTS Sbjct: 77 GCMVERTSLAELAARSLNRFTDGLRLHTEEIVRAVCGFFFISLWAVGGILLTPELKTTSS 136 Query: 123 YVGALQLAIAAGMLSRRTLPLSAAGMVVLFGIGVRDYGVFHLADYPIFLGVAAYLALVGL 182 VG LQLAIAAG+LSRRT+P SAAG+VVLFG+ VRDYG FHLADYPIFLG+AAYLAL GL Sbjct: 137 MVGPLQLAIAAGLLSRRTMPFSAAGIVVLFGLAVRDYGTFHLADYPIFLGLAAYLALAGL 196 Query: 183 NKDLFGIRPIDVMRYAAAVTLMWASVEKWAYPEWSFPLLIEHSAMTLGFDNEFYMRAAGM 242 KDLFG+ P+DV+RYA AVTLMWASVEKWAYPEWSFPLLIEH MTLG D+EFYMRAAGM Sbjct: 197 QKDLFGVPPLDVVRYATAVTLMWASVEKWAYPEWSFPLLIEHPGMTLGLDSEFYMRAAGM 256 Query: 243 VEFTLAFALIWTPLIRRCAATVLTGMFISACFEFGKIDTIGHSAIIAVLLAIVADNKVLP 302 +EFTLAFAL WTPL+RR AA +L GMFISACFEFGK+D IGHS II VL+AI++DN+ Sbjct: 257 IEFTLAFALAWTPLVRRVAAAILLGMFISACFEFGKLDVIGHSVIIVVLVAILSDNQPRE 316 Query: 303 RDRRAPWLAPVALGAALSVTLFVYYFGHAAIFKTSVL 339 D RAPWLAP L AAL+VTLF YY GHAAIF TS+L Sbjct: 317 ADYRAPWLAPAGLCAALTVTLFAYYVGHAAIFNTSIL 353 >ref|YP_001243276.1| hypothetical protein BBta_7518 [Bradyrhizobium sp. BTAi1] gb|ABQ39370.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 337 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 237/336 (70%), Positives = 271/336 (80%), Gaps = 1/336 (0%) Query: 5 FATCLAAVLFCVVAARSAEAHVKWFCAYDVAGQPRGLENVLCLDFELLLGVAVFWLFAGC 64 FAT + A L + AR A+AHVKWFCA+DVA QPR LENVLCLDFELLL +A F + C Sbjct: 2 FATLIEAALLSTMNARPADAHVKWFCAFDVAAQPRTLENVLCLDFELLLSLAAFSVLMAC 61 Query: 65 LIEPTSLGDATIRVMDRITEGLRLRTELMMRAVCAFFFISIWAVGGILLTPELKTTSPYV 124 L EPT+LG A R D +T LRLRTE M+RA+C FFFISI +GG LLTPELKTT+P V Sbjct: 62 LAEPTALGHAATRAFDHVTMPLRLRTEEMIRAICGFFFISIGILGGFLLTPELKTTAPQV 121 Query: 125 GALQLAIAAGMLSRRTLPLSAAGMVVLFGIGVRDYGVFHLADYPIFLGVAAYLALVGLNK 184 LQ AIAAGML R+TLPLSAAG+VVLFGI V +YGVFHL DYPIFLG+AAYLALVGL K Sbjct: 122 AVLQFAIAAGMLWRQTLPLSAAGIVVLFGIAVSNYGVFHLMDYPIFLGLAAYLALVGLQK 181 Query: 185 D-LFGIRPIDVMRYAAAVTLMWASVEKWAYPEWSFPLLIEHSAMTLGFDNEFYMRAAGMV 243 + LFG+ PIDV+RYA A+TLMWASVEKWAYP+WSFP+LIEHS +TLGFD+EFYMRAAGMV Sbjct: 182 NSLFGVSPIDVLRYATALTLMWASVEKWAYPQWSFPILIEHSIITLGFDSEFYMRAAGMV 241 Query: 244 EFTLAFALIWTPLIRRCAATVLTGMFISACFEFGKIDTIGHSAIIAVLLAIVADNKVLPR 303 EFTLAFAL+WTPLIRRC+A +L FI+ACFEFGKID +GHSAIIA L AI D K R Sbjct: 242 EFTLAFALLWTPLIRRCSAAILVVAFIAACFEFGKIDAVGHSAIIAALFAIACDGKAYAR 301 Query: 304 DRRAPWLAPVALGAALSVTLFVYYFGHAAIFKTSVL 339 DRR PWLAP+AL A+L+ TL VYY HA F T++L Sbjct: 302 DRRVPWLAPIALCASLAATLLVYYLDHALSFDTALL 337 >ref|YP_002419351.1| hypothetical protein Mchl_0488 [Methylobacterium chloromethanicum CM4] gb|ACK81423.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 357 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/321 (61%), Positives = 247/321 (76%) Query: 14 FCVVAARSAEAHVKWFCAYDVAGQPRGLENVLCLDFELLLGVAVFWLFAGCLIEPTSLGD 73 F V +A AHVKWFCA+DVAGQPRGLE VLC DFELL G+A+ L GCL+E T LG Sbjct: 21 FLVFGTGAASAHVKWFCAFDVAGQPRGLEQVLCTDFELLTGLALVCLMFGCLMEGTPLGT 80 Query: 74 ATIRVMDRITEGLRLRTELMMRAVCAFFFISIWAVGGILLTPELKTTSPYVGALQLAIAA 133 A + +DR+T R+ + L++RAV FF +S+W +GGI+LTPELKT + ++ LQLA+AA Sbjct: 81 ALLNALDRVTASARVHSGLIVRAVVGFFLVSLWNLGGIILTPELKTDATWIPWLQLAMAA 140 Query: 134 GMLSRRTLPLSAAGMVVLFGIGVRDYGVFHLADYPIFLGVAAYLALVGLNKDLFGIRPID 193 G+L +RTLP +AAG+V LFG V +YGVFHLADYP+FLGVAA+LAL L++DLFG RPID Sbjct: 141 GLLWKRTLPFTAAGIVFLFGFAVWNYGVFHLADYPVFLGVAAFLALTALDRDLFGQRPID 200 Query: 194 VMRYAAAVTLMWASVEKWAYPEWSFPLLIEHSAMTLGFDNEFYMRAAGMVEFTLAFALIW 253 V+R AAA+TLMWASVEKWAYP W+ PL+ AMT+G E +M+AAG++EFTLAFALIW Sbjct: 201 VVRIAAAITLMWASVEKWAYPHWTDPLIAAKPAMTMGASPELFMQAAGIIEFTLAFALIW 260 Query: 254 TPLIRRCAATVLTGMFISACFEFGKIDTIGHSAIIAVLLAIVADNKVLPRDRRAPWLAPV 313 TPL+RR +A +LT +FISA FEFGK+D IGHS IIAVL+AI AD+ +P RR LAPV Sbjct: 261 TPLVRRASAIILTAVFISAIFEFGKVDAIGHSGIIAVLIAIAADDVRVPATRRDVVLAPV 320 Query: 314 ALGAALSVTLFVYYFGHAAIF 334 +AL + L VYYF H A+F Sbjct: 321 YYASALMLFLGVYYFAHEALF 341 >ref|YP_002961598.1| hypothetical protein MexAM1_META1p0373 [methylobacterium extorquens AM1] gb|ACS38321.1| conserved hypothetical protein precursor ; putative membrane protein [Methylobacterium extorquens AM1] Length = 344 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 247/321 (76%) Query: 14 FCVVAARSAEAHVKWFCAYDVAGQPRGLENVLCLDFELLLGVAVFWLFAGCLIEPTSLGD 73 F + +A AHVKWFCA+DVAGQPRGLE VLC DFELL G+A+ L GCL+E T LG Sbjct: 8 FLIFGTEAASAHVKWFCAFDVAGQPRGLEQVLCADFELLTGLALVCLMFGCLMEGTPLGT 67 Query: 74 ATIRVMDRITEGLRLRTELMMRAVCAFFFISIWAVGGILLTPELKTTSPYVGALQLAIAA 133 A + +DR+T R+ + L++RAV FF +S+W +GGI+LTPELKT + ++ LQLA+AA Sbjct: 68 ALLNALDRVTASARVHSGLIVRAVIGFFLVSLWNLGGIILTPELKTDATWIPWLQLAMAA 127 Query: 134 GMLSRRTLPLSAAGMVVLFGIGVRDYGVFHLADYPIFLGVAAYLALVGLNKDLFGIRPID 193 G+L +RTLP +AAG+V LFG V +YGVFHLADYP+FLGVAA+LAL L++DLFG RPID Sbjct: 128 GLLWKRTLPFTAAGIVFLFGFAVWNYGVFHLADYPVFLGVAAFLALTALDRDLFGQRPID 187 Query: 194 VMRYAAAVTLMWASVEKWAYPEWSFPLLIEHSAMTLGFDNEFYMRAAGMVEFTLAFALIW 253 V+R AAA+TLMWASVEKWAYP W+ PL+ AMT+G E +M+AAG++EFTLAFALIW Sbjct: 188 VVRIAAAITLMWASVEKWAYPHWTDPLIAAKPAMTMGASPELFMQAAGIIEFTLAFALIW 247 Query: 254 TPLIRRCAATVLTGMFISACFEFGKIDTIGHSAIIAVLLAIVADNKVLPRDRRAPWLAPV 313 TPL+RR +A +LT +FISA FEFGK+D IGHS IIAVL+AI AD+ +P RR LAPV Sbjct: 248 TPLVRRASAIILTAVFISAIFEFGKVDAIGHSGIIAVLIAIAADDVRVPATRRDVVLAPV 307 Query: 314 ALGAALSVTLFVYYFGHAAIF 334 +AL + L VYYF H A+F Sbjct: 308 YYASALMLFLGVYYFAHEALF 328