BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0177.0004.p         (182 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_533875.1| RNA polymerase sigma factor [Rhodopseudomonas p...   350   5e-95
ref|YP_568505.1| RNA polymerase sigma factor [Rhodopseudomonas p...   347   4e-94
ref|YP_001203198.1| RNA polymerase sigma factor [Bradyrhizobium ...   347   4e-94
ref|YP_485007.1| RNA polymerase sigma factor [Rhodopseudomonas p...   347   5e-94
ref|NP_949561.1| RNA polymerase sigma factor [Rhodopseudomonas p...   346   8e-94

>ref|YP_533875.1| RNA polymerase sigma factor [Rhodopseudomonas palustris BisB18]
 gb|ABD89556.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas
           palustris BisB18]
          Length = 182

 Score =  350 bits (898), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 171/182 (93%), Positives = 178/182 (97%)

Query: 1   MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRAIANIDSFQPGSNLPAWL 60
           MPLT+ LRDDILA+VPSLRAFAISLSGNGDRADDLVQETLLRA+ANIDSFQPGSNLPAWL
Sbjct: 1   MPLTDSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWL 60

Query: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPSQAAHLEFEEFRAALEKLPQDQREAL 120
           FTILRNLFRSDYRKRRREVEDAEG+YAKTLKSQP Q AHLEFEEFRAALEKLPQDQREAL
Sbjct: 61  FTILRNLFRSDYRKRRREVEDAEGSYAKTLKSQPGQNAHLEFEEFRAALEKLPQDQREAL 120

Query: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDSAEDFGPDNTVRAVIGGN 180
           ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSA+LYVD AEDFGPD+TVRAVIGG+
Sbjct: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSAMLYVDGAEDFGPDDTVRAVIGGS 180

Query: 181 GG 182
           GG
Sbjct: 181 GG 182


>ref|YP_568505.1| RNA polymerase sigma factor [Rhodopseudomonas palustris BisB5]
 gb|ABE38604.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas
           palustris BisB5]
          Length = 181

 Score =  347 bits (890), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 170/181 (93%), Positives = 176/181 (97%)

Query: 1   MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRAIANIDSFQPGSNLPAWL 60
           MPLT+ LRDDILA+VPSLRAFAISLSGNGDRADDLVQETLLRA+ANIDSFQPGSNLPAWL
Sbjct: 1   MPLTDSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWL 60

Query: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPSQAAHLEFEEFRAALEKLPQDQREAL 120
           FTILRNLFRSDYRKRRREVEDA+G+YAKTLKSQP Q AHLEFEEFR AL+KLPQDQREAL
Sbjct: 61  FTILRNLFRSDYRKRRREVEDADGSYAKTLKSQPGQNAHLEFEEFRVALDKLPQDQREAL 120

Query: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDSAEDFGPDNTVRAVIGGN 180
           ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVD AEDFGPDNTVRAVIGGN
Sbjct: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDGAEDFGPDNTVRAVIGGN 180

Query: 181 G 181
           G
Sbjct: 181 G 181


>ref|YP_001203198.1| RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278]
 emb|CAL74961.1| RNA polymerase sigma-E factor (Sigma-24) protein [Bradyrhizobium
           sp. ORS 278]
          Length = 182

 Score =  347 bits (890), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 169/182 (92%), Positives = 176/182 (96%)

Query: 1   MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRAIANIDSFQPGSNLPAWL 60
           MPLT+ LRDDILA+VPSLRAFAISLSGN DRADDLVQETLLRA+ANIDSFQPGSNLPAWL
Sbjct: 1   MPLTDSLRDDILAAVPSLRAFAISLSGNSDRADDLVQETLLRALANIDSFQPGSNLPAWL 60

Query: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPSQAAHLEFEEFRAALEKLPQDQREAL 120
           FTILRNLFRSDYRKRRREVEDAEGNYAKTLK+ PSQ AHLEFEEFRAALEKLPQDQREAL
Sbjct: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKTHPSQGAHLEFEEFRAALEKLPQDQREAL 120

Query: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDSAEDFGPDNTVRAVIGGN 180
           ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKL+ALLYV+ AEDFGPD TVRAVIGG+
Sbjct: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLAALLYVEGAEDFGPDETVRAVIGGS 180

Query: 181 GG 182
           GG
Sbjct: 181 GG 182


>ref|YP_485007.1| RNA polymerase sigma factor [Rhodopseudomonas palustris HaA2]
 gb|ABD06096.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas
           palustris HaA2]
          Length = 181

 Score =  347 bits (889), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 170/181 (93%), Positives = 176/181 (97%)

Query: 1   MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRAIANIDSFQPGSNLPAWL 60
           MPLT+ LRDDILA+VPSLRAFAISLSGNGDRADDLVQETLLRA+ANIDSFQPGSNLPAWL
Sbjct: 1   MPLTDSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWL 60

Query: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPSQAAHLEFEEFRAALEKLPQDQREAL 120
           FTILRNLFRSDYRKRRREVEDA+G+YAKTLKSQP Q AHLEFEEFRAALEKLPQDQREAL
Sbjct: 61  FTILRNLFRSDYRKRRREVEDADGSYAKTLKSQPGQNAHLEFEEFRAALEKLPQDQREAL 120

Query: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDSAEDFGPDNTVRAVIGGN 180
           ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVD AEDFGPD+TVRAVIG N
Sbjct: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDGAEDFGPDDTVRAVIGSN 180

Query: 181 G 181
           G
Sbjct: 181 G 181


>ref|NP_949561.1| RNA polymerase sigma factor [Rhodopseudomonas palustris CGA009]
 ref|YP_001993672.1| RNA polymerase sigma factor [Rhodopseudomonas palustris TIE-1]
 emb|CAE29666.1| RNA polymerase ECF-type sigma factor [Rhodopseudomonas palustris
           CGA009]
 gb|ACF03197.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas
           palustris TIE-1]
          Length = 181

 Score =  346 bits (888), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 169/181 (93%), Positives = 176/181 (97%)

Query: 1   MPLTNELRDDILASVPSLRAFAISLSGNGDRADDLVQETLLRAIANIDSFQPGSNLPAWL 60
           MPLT+ LRDDILA+VPSLRAFAISLSGN DRADDLVQETLLRA+ANIDSFQPGSNLPAWL
Sbjct: 1   MPLTDSLRDDILAAVPSLRAFAISLSGNADRADDLVQETLLRALANIDSFQPGSNLPAWL 60

Query: 61  FTILRNLFRSDYRKRRREVEDAEGNYAKTLKSQPSQAAHLEFEEFRAALEKLPQDQREAL 120
           FTILRNLFRSDYRKRRREVEDA+G+YAKTLKSQP Q AHLEFEEFRAAL+KLPQDQREAL
Sbjct: 61  FTILRNLFRSDYRKRRREVEDADGSYAKTLKSQPGQTAHLEFEEFRAALDKLPQDQREAL 120

Query: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDSAEDFGPDNTVRAVIGGN 180
           ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVD AEDFGPD+TVRAVIGGN
Sbjct: 121 ILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALLYVDGAEDFGPDDTVRAVIGGN 180

Query: 181 G 181
           G
Sbjct: 181 G 181