BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0177.0003.p         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001203199.1| hypothetical protein BRADO1048 [Bradyrhizobi...    93   1e-17
ref|YP_004110728.1| hypothetical protein Rpdx1_4444 [Rhodopseudo...    92   2e-17
ref|YP_001242793.1| hypothetical protein BBta_7002 [Bradyrhizobi...    91   4e-17
ref|ZP_08628421.1| hypothetical protein CSIRO_1496 [Bradyrhizobi...    90   1e-16
ref|NP_774436.1| hypothetical protein bsr7796 [Bradyrhizobium ja...    90   1e-16

>ref|YP_001203199.1| hypothetical protein BRADO1048 [Bradyrhizobium sp. ORS 278]
 emb|CAL74962.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 78

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 50/62 (80%)

Query: 5  KKQGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELIRKLDGPEAAAGAVAGGDTDKNN 64
          +K GGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAEL+RKLD P A +    GG ++  N
Sbjct: 15 RKPGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELVRKLDAPAAQSHVENGGGSNDQN 74

Query: 65 GG 66
           G
Sbjct: 75 DG 76


>ref|YP_004110728.1| hypothetical protein Rpdx1_4444 [Rhodopseudomonas palustris DX-1]
 gb|ADU45995.1| hypothetical protein Rpdx1_4444 [Rhodopseudomonas palustris DX-1]
          Length = 79

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 7  QGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELIRKLDGPEAAAGAVAGGDTDKNN 64
          +GGLNAEIQ+RIGHQLRAMYDDVVRQGVPDRFA+LI+KLD P+ AA A    DT+ ++
Sbjct: 17 KGGLNAEIQARIGHQLRAMYDDVVRQGVPDRFADLIKKLDDPQRAAEAATASDTNSSS 74


>ref|YP_001242793.1| hypothetical protein BBta_7002 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38887.1| hypothetical protein BBta_7002 [Bradyrhizobium sp. BTAi1]
          Length = 78

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 5  KKQGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELIRKLDGPEAAAGAV-AGGDTDKN 63
          +K GGLNAEIQSRIGHQLRAMYDDVVRQGVPDRF +LIRKLD P A +     GG TD+N
Sbjct: 15 RKPGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFTDLIRKLDVPAAQSHVENGGGSTDQN 74

Query: 64 NG 65
          +G
Sbjct: 75 DG 76


>ref|ZP_08628421.1| hypothetical protein CSIRO_1496 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP08924.1| hypothetical protein CSIRO_1496 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 75

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 45/47 (95%)

Query: 6  KQGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELIRKLDGPEAAA 52
          KQGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFA+LIR+LD  EAAA
Sbjct: 17 KQGGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFADLIRQLDSQEAAA 63


>ref|NP_774436.1| hypothetical protein bsr7796 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53061.1| bsr7796 [Bradyrhizobium japonicum USDA 110]
          Length = 81

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 53/77 (68%), Gaps = 10/77 (12%)

Query: 1  MKEVKKQ---------GGLNAEIQSRIGHQLRAMYDDVVRQGVPDRFAELIRKLDGPEAA 51
          MK++K Q         GGL  EIQSRIGHQLRAMYDDVVRQGVPDRFAELI+KLD P A 
Sbjct: 5  MKDLKSQASKSTTPGKGGLTPEIQSRIGHQLRAMYDDVVRQGVPDRFAELIKKLDAPGAT 64

Query: 52 AGA-VAGGDTDKNNGGD 67
          +     GG  D NNG D
Sbjct: 65 SQVGNEGGSNDNNNGRD 81