BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0002.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774435.1| two-component response regulator [Bradyrhizobiu... 489 e-136 ref|YP_533873.1| two-component response regulator [Rhodopseudomo... 479 e-133 ref|YP_485009.1| two-component response regulator [Rhodopseudomo... 473 e-131 ref|YP_780679.1| two-component response regulator [Rhodopseudomo... 471 e-131 ref|NP_949559.1| two-component response regulator [Rhodopseudomo... 466 e-129 >ref|NP_774435.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53060.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/270 (88%), Positives = 259/270 (95%), Gaps = 2/270 (0%) Query: 1 MSRSQIVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDGSLLDQTHGPRAGLFRLF 60 MSRSQ+VAEHLPLLRRYARALTG+QASGDAYV AMLEA+L D ++LD++HGPRAGLFRLF Sbjct: 6 MSRSQLVAEHLPLLRRYARALTGSQASGDAYVAAMLEAMLGDPAVLDESHGPRAGLFRLF 65 Query: 61 TQIWNSVSVNNNDNADVATLSLPPERRLSNITPLPRQAFLLLSLEGFSEEEVGYILGTDI 120 TQIWNSVSVN D+++V TL +PPERRLSNITPLPRQAFLLLSLEGFSEEEV +IL TD+ Sbjct: 66 TQIWNSVSVN--DDSEVTTLPMPPERRLSNITPLPRQAFLLLSLEGFSEEEVAFILSTDV 123 Query: 121 AETRKLTDAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHSDAVALA 180 AETR+L DAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNV+GVARTH+DAVALA Sbjct: 124 AETRRLADAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVVGVARTHADAVALA 183 Query: 181 KNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 240 KN++PGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP Sbjct: 184 KNRRPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 243 Query: 241 FQPAMVSAVASQALFFQRNSRNRTPRAASA 270 FQPAMVSAVASQALFFQRNSRNRTP+A +A Sbjct: 244 FQPAMVSAVASQALFFQRNSRNRTPKAPAA 273 >ref|YP_533873.1| two-component response regulator [Rhodopseudomonas palustris BisB18] gb|ABD89554.1| response regulator receiver (CheY-like) and unknown domain protein [Rhodopseudomonas palustris BisB18] Length = 268 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 236/270 (87%), Positives = 253/270 (93%), Gaps = 2/270 (0%) Query: 1 MSRSQIVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDGSLLDQTHGPRAGLFRLF 60 MSRSQ+VAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQD +LLD+ HG RAGLFRLF Sbjct: 1 MSRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDQNLLDEQHGARAGLFRLF 60 Query: 61 TQIWNSVSVNNNDNADVATLSLPPERRLSNITPLPRQAFLLLSLEGFSEEEVGYILGTDI 120 T+IWNSV++N D+ +V TL LP ERRLSNITPLPRQAFLLLSLEGFSEEEV +IL D+ Sbjct: 61 TRIWNSVALN--DDTEVMTLPLPSERRLSNITPLPRQAFLLLSLEGFSEEEVAFILALDV 118 Query: 121 AETRKLTDAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHSDAVALA 180 E RKLT+ AGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTH+DA+ALA Sbjct: 119 TEVRKLTEVAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAIALA 178 Query: 181 KNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 240 K +KPGLILADIQLADGSSGLDAVNELL+TFEVPVVFITAYPERFLTGERPEPAFLISKP Sbjct: 179 KTRKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKP 238 Query: 241 FQPAMVSAVASQALFFQRNSRNRTPRAASA 270 FQPAMVSAVASQALFFQRNSRNR PRAA++ Sbjct: 239 FQPAMVSAVASQALFFQRNSRNRAPRAAAS 268 >ref|YP_485009.1| two-component response regulator [Rhodopseudomonas palustris HaA2] gb|ABD06098.1| response regulator receiver and unknown domain protein [Rhodopseudomonas palustris HaA2] Length = 268 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/270 (85%), Positives = 252/270 (93%), Gaps = 2/270 (0%) Query: 1 MSRSQIVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDGSLLDQTHGPRAGLFRLF 60 MSRSQ+VAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQD +LLD+ HGPRAGLFRLF Sbjct: 1 MSRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLF 60 Query: 61 TQIWNSVSVNNNDNADVATLSLPPERRLSNITPLPRQAFLLLSLEGFSEEEVGYILGTDI 120 QIWNSV++N D+++V +L +P ERRLS ITPLPRQAFLLLSLEGFSEEEV ++L TD+ Sbjct: 61 AQIWNSVALN--DDSEVRSLPMPSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDV 118 Query: 121 AETRKLTDAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHSDAVALA 180 E R+L D AGREMA EIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTH+DA+ALA Sbjct: 119 GEIRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAIALA 178 Query: 181 KNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 240 + KKPGLILADIQLADGSSGLDAVNELL+TFEVPVVFITAYPERFLTGERPEPAFLISKP Sbjct: 179 RTKKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKP 238 Query: 241 FQPAMVSAVASQALFFQRNSRNRTPRAASA 270 FQPAMVSAVASQALFFQRNSRNRTP AA++ Sbjct: 239 FQPAMVSAVASQALFFQRNSRNRTPNAAAS 268 >ref|YP_780679.1| two-component response regulator [Rhodopseudomonas palustris BisA53] gb|ABJ05699.1| response regulator receiver and unknown domain protein [Rhodopseudomonas palustris BisA53] Length = 268 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/270 (85%), Positives = 251/270 (92%), Gaps = 2/270 (0%) Query: 1 MSRSQIVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDGSLLDQTHGPRAGLFRLF 60 MSRSQ VAEHLPLLRRYARALTG+Q+SGDAYVGAMLEALLQD S+LD+ GPR GLFRLF Sbjct: 1 MSRSQFVAEHLPLLRRYARALTGSQSSGDAYVGAMLEALLQDPSVLDEQQGPRVGLFRLF 60 Query: 61 TQIWNSVSVNNNDNADVATLSLPPERRLSNITPLPRQAFLLLSLEGFSEEEVGYILGTDI 120 TQIWNSV++N D+ ++ TL +PPERRLSNITPLPRQAFLLLSLEGFSE EV +IL D+ Sbjct: 61 TQIWNSVALN--DDTEIRTLPMPPERRLSNITPLPRQAFLLLSLEGFSEGEVAFILQLDV 118 Query: 121 AETRKLTDAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHSDAVALA 180 AE RKLT+ AGREMA EIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTH+DA+ALA Sbjct: 119 AEVRKLTEEAGREMAVEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADALALA 178 Query: 181 KNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 240 K +KPGLILADIQLADGSSGLDAVNELL+TFEVPVVFITAYPERFLTGERPEPAFLISKP Sbjct: 179 KARKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKP 238 Query: 241 FQPAMVSAVASQALFFQRNSRNRTPRAASA 270 FQPAMVSAVASQALFFQRNSRNR PRAA++ Sbjct: 239 FQPAMVSAVASQALFFQRNSRNRAPRAAAS 268 >ref|NP_949559.1| two-component response regulator [Rhodopseudomonas palustris CGA009] ref|YP_001993670.1| two-component response regulator [Rhodopseudomonas palustris TIE-1] emb|CAE29664.1| response regulator receiver (CheY-like protein) with unknown domain [Rhodopseudomonas palustris CGA009] gb|ACF03195.1| response regulator receiver and unknown domain protein [Rhodopseudomonas palustris TIE-1] Length = 268 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/270 (84%), Positives = 248/270 (91%), Gaps = 2/270 (0%) Query: 1 MSRSQIVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDGSLLDQTHGPRAGLFRLF 60 MSRSQ+VAEHLPLLRRYARALTG+Q SGDAYVGAMLEALLQD +LLD+ HGPR GLFRLF Sbjct: 1 MSRSQVVAEHLPLLRRYARALTGSQTSGDAYVGAMLEALLQDPALLDERHGPRPGLFRLF 60 Query: 61 TQIWNSVSVNNNDNADVATLSLPPERRLSNITPLPRQAFLLLSLEGFSEEEVGYILGTDI 120 TQIWNSV++N D+ADV TL +P ERRLS ITPLPRQAFLLLSLEGFSEEEV ++L D+ Sbjct: 61 TQIWNSVALN--DDADVRTLPMPSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLQVDV 118 Query: 121 AETRKLTDAAGREMAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHSDAVALA 180 AE R+L + AG+EMA EIATDVLIIEDETFIAMDLESL+K LGHNVIGVARTH+DA+ALA Sbjct: 119 AEVRQLVETAGKEMAEEIATDVLIIEDETFIAMDLESLIKGLGHNVIGVARTHADAIALA 178 Query: 181 KNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 240 K +KPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP Sbjct: 179 KTQKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKP 238 Query: 241 FQPAMVSAVASQALFFQRNSRNRTPRAASA 270 FQPAMVSAVASQALFFQRNSRNR P A ++ Sbjct: 239 FQPAMVSAVASQALFFQRNSRNRKPSAVAS 268