BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0016.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629265.1| hypothetical protein CSIRO_2353 [Bradyrhizobi...    67   9e-10
ref|YP_004632400.1| hypothetical protein OCA5_c14430 [Oligotroph...    62   2e-08
ref|YP_002289600.1| hypothetical protein OCAR_6623 [Oligotropha ...    62   3e-08
ref|ZP_07026695.1| conserved hypothetical protein [Afipia sp. 1N...    58   4e-07
ref|YP_004474657.1| cold-shock DNA-binding domain protein [Pseud...    35   3.9  

>ref|ZP_08629265.1| hypothetical protein CSIRO_2353 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07758.1| hypothetical protein CSIRO_2353 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 105

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%)

Query: 34  FGMLLLFGALTALPIVLTLRLVEPALALPVLSLLLFVQAAITAIAARVIHVRTSVANLTL 93
           FG L+      A+P    +  +E  L LP LS+L F  AA+ AI A  +  + +   L L
Sbjct: 8   FGSLIALTLAVAVPAFFIVHTLETHLVLPALSVLFFGTAALAAIMAFSVRSKKNTETLNL 67

Query: 94  WDFAGAFTFMGCAAAILGEPDQAALFFEE 122
           WD AG     GCAA+++GEP+Q A  FE 
Sbjct: 68  WDVAGGLVITGCAASVMGEPEQVAQLFEH 96


>ref|YP_004632400.1| hypothetical protein OCA5_c14430 [Oligotropha carboxidovorans OM5]
 gb|AEI02583.1| hypothetical protein OCA4_c14430 [Oligotropha carboxidovorans OM4]
 gb|AEI06159.1| hypothetical protein OCA5_c14430 [Oligotropha carboxidovorans OM5]
          Length = 180

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query: 46  LPIVLTLRLVEPALALPVLSLLLFVQAAITAIAARVIHVRTSVANLTLWDFAGAFTFMGC 105
           +P++   R ++  L +   S++ F+ A + A+ A  I+ + +  +L+LWD AG F   GC
Sbjct: 95  VPVLFIARTLDRELMMIAFSVMFFLGATLAAVTAWFINSKRNSQSLSLWDVAGGFVITGC 154

Query: 106 AAAILGEPDQAALFFEEEAAMRPVSR 131
           AA+++ EP+ AA  FE     R  SR
Sbjct: 155 AASVMAEPEHAAQLFEHLFERRSESR 180


>ref|YP_002289600.1| hypothetical protein OCAR_6623 [Oligotropha carboxidovorans OM5]
 gb|ACI93735.1| hypothetical protein OCAR_6623 [Oligotropha carboxidovorans OM5]
          Length = 117

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%)

Query: 46  LPIVLTLRLVEPALALPVLSLLLFVQAAITAIAARVIHVRTSVANLTLWDFAGAFTFMGC 105
           +P++   R ++  L +   S++ F+ A + A+ A  I+ + +  +L+LWD AG F   GC
Sbjct: 32  VPVLFIARTLDRELMMIAFSVMFFLGATLAAVTAWFINSKRNSQSLSLWDVAGGFVITGC 91

Query: 106 AAAILGEPDQAALFFEEEAAMRPVSR 131
           AA+++ EP+ AA  FE     R  SR
Sbjct: 92  AASVMAEPEHAAQLFEHLFERRSESR 117


>ref|ZP_07026695.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI51538.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 119

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query: 48  IVLTLRLVEPALALPVLSLLLFVQAAITAIAARVIHVRTSVANLTLWDFAGAFTFMGCAA 107
           ++L +R+V   L +  LSL+ FV A + A  A  +  R +  +L+LWD AGAF  +G +A
Sbjct: 36  VLLVVRMVGSELTMMALSLMFFVSALLVATIAWFVRSRHNSRSLSLWDVAGAFVIIGISA 95

Query: 108 AILGEPDQAALFFEE 122
           ++L +P+ A   FE 
Sbjct: 96  SVLADPEHAVELFEH 110


>ref|YP_004474657.1| cold-shock DNA-binding domain protein [Pseudomonas fulva 12-X]
 gb|AEF22563.1| cold-shock DNA-binding domain protein [Pseudomonas fulva 12-X]
          Length = 237

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 13  RTGMSSTIPD-----RTLRK-TPSL-EPFGMLLLFGALTALPIVLTLRL-----VEPALA 60
           R   SST  D     R  R+ +P+L  P    L+F AL  LPIV  LR      + PAL 
Sbjct: 85  RAANSSTAKDARPTARGTRQPSPALRNPLTKWLIFAALCLLPIVGALRWLANGAMWPALL 144

Query: 61  LPVLSLLLFVQAAITAIAARVIHVRTSVANLTLWDFAGAF 100
            PV+S+L F        +A+    RT    L L + AG +
Sbjct: 145 YPVVSVLCFFLYWHDKNSAQQGRQRTPEKTLHLVELAGGW 184