BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0176.0006.p (471 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239497.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp... 786 0.0 ref|NP_770430.1| cysteinyl-tRNA synthetase [Bradyrhizobium japon... 775 0.0 ref|YP_780922.1| cysteinyl-tRNA synthetase [Rhodopseudomonas pal... 698 0.0 ref|YP_486981.1| cysteinyl-tRNA synthetase [Rhodopseudomonas pal... 694 0.0 ref|YP_569201.1| cysteinyl-tRNA synthetase [Rhodopseudomonas pal... 686 0.0 >ref|YP_001239497.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] sp|A5EHE7.1|SYC_BRASB RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABQ35591.1| cysteinyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 472 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/472 (79%), Positives = 409/472 (86%), Gaps = 1/472 (0%) Query: 1 MDLRLYDTLTREKRPFVPLDATNVRMYACGPTVYDFAHIGNGRAAIVFDVLFRLLRHRYG 60 M+LRLYDT TREKRPFVPL NVRMY CGPTVYDFAHIGN R IVFDVLFRLLRH YG Sbjct: 1 MELRLYDTATREKRPFVPLHRNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 61 AGHVTYVRNITDVDDKINVRAARDYPGVPLNEAIRKVTELTYQQYQDDVTALGCLPPTVQ 120 A HVTYVRNITDVDDKIN RAARD+PG+PLNEAIR VTELT +Q+ +DV ALGCL PT++ Sbjct: 61 AEHVTYVRNITDVDDKINARAARDFPGLPLNEAIRNVTELTERQFHEDVDALGCLRPTIE 120 Query: 121 PRATEHIPEMRAIIEKLVAGGFAYVAEDHVLFSPQAMNAANSMLPRYGALSKRSLDEMIA 180 PRATEHI EMR IIE+LVAGGFAYVAEDHVLFSP AMNAAN +LPRYGAL+ RSLDEMIA Sbjct: 121 PRATEHIAEMRDIIERLVAGGFAYVAEDHVLFSPAAMNAANKVLPRYGALANRSLDEMIA 180 Query: 181 GARVDVAPYKRDNTDFVLWKPSKPGEPSWPSPAGIKVEGRPGWHIECSAMAWKHLGEKFD 240 GARVDVAPYK+D TDFVLWKPSKPGEPSWPSPAGI EGRPGWHIECSAM+WKHLGE FD Sbjct: 181 GARVDVAPYKKDATDFVLWKPSKPGEPSWPSPAGIAAEGRPGWHIECSAMSWKHLGETFD 240 Query: 241 IHGGGIDLVFPHHENELAQTCCAFHSDRMANVWMHNGFLQIESEKMSKSLGNFFTIRDLL 300 IHGGGIDLVFPHHENE+AQ+CCAFH+ RMANVWMHNGFLQ+E EKMSKSLGNF TIR++L Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTARMANVWMHNGFLQVEGEKMSKSLGNFVTIREVL 300 Query: 301 ADWPGEVLRLAMLKTHYRSPLDWTAKATEEAAKTLDDWYAVAADAEPGAPSPAMVEALYD 360 ADWPGEV+RL MLKTHYRSP+DWT + EE+AK +DDWY A D G P+ A++EAL D Sbjct: 301 ADWPGEVVRLNMLKTHYRSPIDWTLRGLEESAKAVDDWYRTAGDLREGRPADAVIEALRD 360 Query: 361 DLNTAQAMAVLHGLRG-AASSSEQSRKEFAGSLRLLGFLSESAAAWEARKQQASGVDAAA 419 D+NT +AVLHGLR AAS F GSLRLLGFL+E AA W ARKQQASGVDAA Sbjct: 361 DINTPLMVAVLHGLRNEAASGGVDDVARFVGSLRLLGFLAEDAAQWRARKQQASGVDAAK 420 Query: 420 VEALIAERTAARARKDFKESDRIRDQLAAMGVAIKDGKDAEGKPITTWEVAR 471 VE LIAERTAARARKDFKESDR+RD+LAAMGV +KDGK A+GKP+TTWE+AR Sbjct: 421 VEGLIAERTAARARKDFKESDRLRDELAAMGVVLKDGKGADGKPVTTWEMAR 472 >ref|NP_770430.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] sp|Q89NP8.1|SYC_BRAJA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS dbj|BAC49055.1| cysteinyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 460 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/471 (79%), Positives = 406/471 (86%), Gaps = 11/471 (2%) Query: 1 MDLRLYDTLTREKRPFVPLDATNVRMYACGPTVYDFAHIGNGRAAIVFDVLFRLLRHRYG 60 M+LRLYDTLT+EKR FVPLDA NVRMY CGPTVYDFAHIGN R IVFDVLFRLLRH YG Sbjct: 1 MELRLYDTLTKEKRTFVPLDANNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 61 AGHVTYVRNITDVDDKINVRAARDYPGVPLNEAIRKVTELTYQQYQDDVTALGCLPPTVQ 120 HV YVRNITDVDDKIN RAARD+PG+PLNEAIR+VTE T +Q+ DV ALG L P+V+ Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDFPGLPLNEAIREVTEQTGKQFHADVDALGALRPSVE 120 Query: 121 PRATEHIPEMRAIIEKLVAGGFAYVAEDHVLFSPQAMNAANSMLPRYGALSKRSLDEMIA 180 PRATEHI EMR IIE+LVAGGFAYVAEDHVLFSPQAMNAANS LPRYGALS RSLDEM+A Sbjct: 121 PRATEHIGEMREIIERLVAGGFAYVAEDHVLFSPQAMNAANSTLPRYGALSNRSLDEMVA 180 Query: 181 GARVDVAPYKRDNTDFVLWKPSKPGEPSWPSPAGIKVEGRPGWHIECSAMAWKHLGEKFD 240 GARVDVAPYK+ +TDFVLWKPSKPGEPSWPSPAGI +GRPGWHIECSAMAWKHLGE FD Sbjct: 181 GARVDVAPYKKGSTDFVLWKPSKPGEPSWPSPAGIAAQGRPGWHIECSAMAWKHLGEYFD 240 Query: 241 IHGGGIDLVFPHHENELAQTCCAFHSDRMANVWMHNGFLQIESEKMSKSLGNFFTIRDLL 300 IHGGGIDLVFPHHENE+AQTCCAFH +RMAN WMHNGFLQ+ESEKMSKSLGNF TI +LL Sbjct: 241 IHGGGIDLVFPHHENEVAQTCCAFHRERMANYWMHNGFLQVESEKMSKSLGNFITIHELL 300 Query: 301 ADWPGEVLRLAMLKTHYRSPLDWTAKATEEAAKTLDDWYAVAADAEPGAPSPAMVEALYD 360 ADWPGEVLRL MLKTHYRSP+DWT K+ EE+AKTLDDWY VAAD +PG P+ ++VE L D Sbjct: 301 ADWPGEVLRLNMLKTHYRSPIDWTMKSLEESAKTLDDWYRVAADVDPGRPAASVVEPLLD 360 Query: 361 DLNTAQAMAVLHGLRGAASSSEQSRKEFAGSLRLLGFLSESAAAWEARKQQASGVDAAAV 420 DLNT+ A+A LHGLR + S+ AGSLRLLGFLSESAA WE RKQ+ASGVDA V Sbjct: 361 DLNTSLAIAALHGLRNSDVSA------LAGSLRLLGFLSESAAQWEDRKQKASGVDAGEV 414 Query: 421 EALIAERTAARARKDFKESDRIRDQLAAMGVAIKDGKDAEGKPITTWEVAR 471 E LI+ERTAAR RKDFKESDRIRDQLAAMGVAIKD K+ TTWE +R Sbjct: 415 ERLISERTAARGRKDFKESDRIRDQLAAMGVAIKDSKEG-----TTWEFSR 460 >ref|YP_780922.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] sp|Q07Q42.1|SYC_RHOP5 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABJ05942.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] Length = 463 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/478 (71%), Positives = 384/478 (80%), Gaps = 22/478 (4%) Query: 1 MDLRLYDTLTREKRPFVPLDATNVRMYACGPTVYDFAHIGNGRAAIVFDVLFRLLRHRYG 60 M+LRLYDTL+REKR F PLD +NVRMY CGPTVYDFAHIGN R IVFDVLFRLLRH YG Sbjct: 1 MELRLYDTLSREKRTFTPLDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYG 60 Query: 61 AGHVTYVRNITDVDDKINVRAARDYPGVPLNEAIRKVTELTYQQYQDDVTALGCLPPTVQ 120 HV YVRNITDVDDKIN RAARD+PG+PLNEAIRKVTE T +Q+ DDV ALGCL PTV+ Sbjct: 61 EAHVKYVRNITDVDDKINDRAARDFPGLPLNEAIRKVTEQTEKQFHDDVDALGCLRPTVE 120 Query: 121 PRATEHIPEMRAIIEKLVAGGFAYVAEDHVLFSPQAMNAANSMLPRYGALSKRSLDEMIA 180 PRATEHI EMR II++L+AGGFAYVA DHVLFSPQAMNA + +LPRYGAL+ RSLDEMIA Sbjct: 121 PRATEHIGEMRDIIDRLIAGGFAYVAADHVLFSPQAMNAKDGVLPRYGALANRSLDEMIA 180 Query: 181 GARVDVAPYKRDNTDFVLWKPSKPGEPSWPSPAGIKVEGRPGWHIECSAMAWKHLGEKFD 240 GARVDVAPYKRD TDFVLWKPSKPGEPSWPSP GI V+GRPGWHIECSAM+WKHLGE+FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPGGIAVQGRPGWHIECSAMSWKHLGERFD 240 Query: 241 IHGGGIDLVFPHHENELAQTCCAFHSDRMANVWMHNGFLQIESEKMSKSLGNFFTIRDLL 300 IHGGGIDLVFPHHENE+AQ+CCAFH++RMA WMHNGFLQ+E EKMSKSLGNF TIR+LL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTERMAETWMHNGFLQVEGEKMSKSLGNFVTIRELL 300 Query: 301 AD-------WPGEVLRLAMLKTHYRSPLDWTAKATEEAAKTLDDWYAVAADAEPGAPSPA 353 A W G VLRLAMLKTHYRSP+DWT +A EA K + DW DA P AP Sbjct: 301 ATDKFGGKRWDGAVLRLAMLKTHYRSPIDWTVEALHEAEKAIYDWSEFTKDATP-APCDE 359 Query: 354 MVEALYDDLNTAQAMAVLHGLRGAASSSEQSRKEFAGSLRLLGFLSESAAAWEARKQQAS 413 +++AL DDLNT + +A LHGLR + E G+L+LLG +Q Sbjct: 360 VIDALADDLNTPKMIAELHGLRRVGKPA-----ELLGALQLLGIGRVF--------RQTI 406 Query: 414 GVDAAAVEALIAERTAARARKDFKESDRIRDQLAAMGVAIKDGKDAEGKPITTWEVAR 471 +D A +ALI RTAARARKDFKESDRIRD+LAAMGV +KDGKDA+GKP+TTWE+AR Sbjct: 407 EIDVNA-QALIEARTAARARKDFKESDRIRDELAAMGVVLKDGKDADGKPVTTWEIAR 463 >ref|YP_486981.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] sp|Q2IUP0.1|SYC_RHOP2 RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABD08070.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 493 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/498 (68%), Positives = 382/498 (76%), Gaps = 32/498 (6%) Query: 1 MDLRLYDTLTREKRPFVPLDATNVRMYACGPTVYDFAHIGNGRAAIVFDVLFRLLRHRYG 60 M LRLYDTLT+EKR F P+D +NVRMY CGPTVYDFAHIGN R IVFDVLFRLLRH YG Sbjct: 1 MALRLYDTLTKEKRAFAPIDPSNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 61 AGHVTYVRNITDVDDKINVRAARDYPGVPLNEAIRKVTELTYQQYQDDVTALGCLPPTVQ 120 HVTYVRNITDVDDKIN RAARDYPG+PLNEAIRKVTE T +Q+ DDV ALGCL PTV+ Sbjct: 61 ENHVTYVRNITDVDDKINDRAARDYPGLPLNEAIRKVTEQTERQFHDDVDALGCLRPTVE 120 Query: 121 PRATEHIPEMRAIIEKLVAGGFAYVAEDHVLFSPQAMNAANSMLPRYGALSKRSLDEMIA 180 PRATEHI EMR II++LVAGGFAYVA DHVLFSP AMNAANS+LPRYGAL+ RSLDEMIA Sbjct: 121 PRATEHIGEMRTIIDRLVAGGFAYVAADHVLFSPAAMNAANSVLPRYGALANRSLDEMIA 180 Query: 181 GARVDVAPYKRDNTDFVLWKPSKPGEPSWPSPAGIKVEGRPGWHIECSAMAWKHLGEKFD 240 GARVDVAPYKRD TDFVLWKPSKPGEPSWPSPAGI +EGRPGWHIECSAM+WKHLGE FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGITMEGRPGWHIECSAMSWKHLGETFD 240 Query: 241 IHGGGIDLVFPHHENELAQTCCAFHSDRMANVWMHNGFLQIESEKMSKSLGNFFTIRDLL 300 IHGGGIDLVFPHHENE+AQ+CCAF +DRMA WMHNGFLQ+E EKMSKSLGNF TIR+LL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFQTDRMAQTWMHNGFLQVEGEKMSKSLGNFITIRELL 300 Query: 301 A-------DWPGEVLRLAMLKTHYRSPLDWTAKATEEAAKTLDDWYAVAADAEPGAPSPA 353 A W GE+LR AM+KTHYRSP+DWT KA +E K L DWY D P P Sbjct: 301 ATEKFGGDSWVGEILRFAMIKTHYRSPIDWTVKALDEGHKVLWDWYRDIGDVGPAQQLPG 360 Query: 354 -MVEALYDDLNTAQAMAVLHGLRGAASSSEQSRKEFAGSLRLLGFLS------------- 399 ++ L DDLN + A+A +H LR ++ E ++ LGF + Sbjct: 361 EFIDCLADDLNISSAIAFMHSLR-----KDKKFAELLATMNFLGFSNAESVLARRPVGVR 415 Query: 400 ------ESAAAWEARKQQASGVDAAAVEALIAERTAARARKDFKESDRIRDQLAAMGVAI 453 + AA + A + + +E I RTAARARKDFKESDRIRD+LAAMG+AI Sbjct: 416 INLPPAHAEAAVGTVEVLAKPLSKSEIEERIDARTAARARKDFKESDRIRDELAAMGIAI 475 Query: 454 KDGKDAEGKPITTWEVAR 471 KDGKDA+GKP+TTWE+AR Sbjct: 476 KDGKDADGKPVTTWEIAR 493 >ref|YP_569201.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] sp|Q139D9.1|SYC_RHOPS RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABE39300.1| cysteinyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 463 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/478 (70%), Positives = 378/478 (79%), Gaps = 22/478 (4%) Query: 1 MDLRLYDTLTREKRPFVPLDATNVRMYACGPTVYDFAHIGNGRAAIVFDVLFRLLRHRYG 60 M LRLYDTLT+EKR F PLD + VRMY CGPTVYDFAHIGN R IVFDVLFRLLRH YG Sbjct: 1 MALRLYDTLTKEKRDFAPLDPSRVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHLYG 60 Query: 61 AGHVTYVRNITDVDDKINVRAARDYPGVPLNEAIRKVTELTYQQYQDDVTALGCLPPTVQ 120 HV YVRNITDVDDKIN RAARDYPG+PLNE+IRKVTE T +Q+ DDV ALGCL PTV+ Sbjct: 61 ENHVKYVRNITDVDDKINDRAARDYPGLPLNESIRKVTEQTERQFHDDVDALGCLRPTVE 120 Query: 121 PRATEHIPEMRAIIEKLVAGGFAYVAEDHVLFSPQAMNAANSMLPRYGALSKRSLDEMIA 180 PRATEHI EMR II++LV GGFAYVA+DHVLFSP AMNAA+S+LPRYGAL+ RSLDEMIA Sbjct: 121 PRATEHIGEMRTIIDRLVEGGFAYVADDHVLFSPGAMNAADSVLPRYGALANRSLDEMIA 180 Query: 181 GARVDVAPYKRDNTDFVLWKPSKPGEPSWPSPAGIKVEGRPGWHIECSAMAWKHLGEKFD 240 GARVDVAPYKRD TDFVLWKPSKPGEPSWPSPAGI +GRPGWHIECSAM+WKHLGE FD Sbjct: 181 GARVDVAPYKRDATDFVLWKPSKPGEPSWPSPAGIATQGRPGWHIECSAMSWKHLGETFD 240 Query: 241 IHGGGIDLVFPHHENELAQTCCAFHSDRMANVWMHNGFLQIESEKMSKSLGNFFTIRDLL 300 IHGGGIDLVFPHHENE+AQ+CCAFH+ RMA WMHNGFLQ+E EKMSKSLGNF TIR+LL Sbjct: 241 IHGGGIDLVFPHHENEVAQSCCAFHTSRMAQTWMHNGFLQVEGEKMSKSLGNFVTIRELL 300 Query: 301 A-------DWPGEVLRLAMLKTHYRSPLDWTAKATEEAAKTLDDWYAVAADAEPGAPSPA 353 A W G LRLAMLKTHYR P+DWTA A EA K + DW DA PG+ Sbjct: 301 ATEKFGGRKWDGATLRLAMLKTHYRQPIDWTADALHEAEKAIFDWSDFTKDATPGS-CDD 359 Query: 354 MVEALYDDLNTAQAMAVLHGLRGAASSSEQSRKEFAGSLRLLGFLSESAAAWEARKQQAS 413 ++ AL DDLNT + +A LH LR A + E G++ LLG + Sbjct: 360 VIAALTDDLNTPKMIAELHALRRAGKAD-----ELCGAMELLGI--------SPVVRGTV 406 Query: 414 GVDAAAVEALIAERTAARARKDFKESDRIRDQLAAMGVAIKDGKDAEGKPITTWEVAR 471 +DA A ++LI RTAARARKDFKESDRIRD+LAAMG+AIKDGKD++GKP+TTWE+AR Sbjct: 407 DLDATA-KSLIDARTAARARKDFKESDRIRDELAAMGIAIKDGKDSDGKPVTTWEIAR 463