BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0174.0001.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772861.1| Rieske iron-sulfur protein [Bradyrhizobium japo... 253 1e-65 ref|YP_001205883.1| hypothetical protein BRADO3898 [Bradyrhizobi... 247 1e-63 ref|YP_001239912.1| hypothetical protein BBta_3936 [Bradyrhizobi... 245 4e-63 ref|YP_001019561.1| Rieske iron-sulfur protein [Methylibium petr... 148 5e-34 ref|YP_004056740.1| rieske (2fe-2S) iron-sulfur domain [Oceanith... 130 2e-28 >ref|NP_772861.1| Rieske iron-sulfur protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51486.1| Rieske iron-sulfur protein [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/218 (56%), Positives = 158/218 (72%), Gaps = 4/218 (1%) Query: 23 MSRSNSN---ASIEQSGESDAAGSCTDPTRRAVLTALASCACLAAIEPAAADDDEQPGAN 79 MSR++ N +S E E + R +L ALA+ ACL A A +D PG++ Sbjct: 1 MSRASFNINSSSSENPAEPEVDAGAEQTRRTLLLGALATTACLGCSASARAGEDP-PGSD 59 Query: 80 ERPQKADRLVRAEGDKAGQVIKSEDLTLGGPPIRAWPQDPNTSVVRKGSRLNEVVLVKLD 139 ERPQK D LV +EGD+ G++I + DL GGPP+ AWP+DP TSVVR SRLNE+++++LD Sbjct: 60 ERPQKGDVLVFSEGDQEGKLITAADLQAGGPPVHAWPKDPKTSVVRSASRLNEILVIRLD 119 Query: 140 PSELDDATRARAPDGIVCYSVVCTHAGCPITAWLKEEQGDKNVLKCLCHNSEYDPRQNAQ 199 P+ELD+ TRARA DGI+ YS +C HAGCP+TAW+K + GDK VLKC+CHNSEYDPR AQ Sbjct: 120 PAELDEQTRARAVDGIIAYSAICAHAGCPVTAWVKSDVGDKEVLKCMCHNSEYDPRAGAQ 179 Query: 200 VVFGPAPRRLAALPLTVADGAITVAAPFVGKVGAQQGG 237 VVFGPAPRRLAALPL A+G+++VA F+GKVG Q G Sbjct: 180 VVFGPAPRRLAALPLAFAEGSLSVAGNFIGKVGGAQPG 217 >ref|YP_001205883.1| hypothetical protein BRADO3898 [Bradyrhizobium sp. ORS 278] emb|CAL77658.1| conserved hypothetical protein; putative Rieske iron-sulfur domain (partial) [Bradyrhizobium sp. ORS 278] Length = 210 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/190 (61%), Positives = 148/190 (77%), Gaps = 3/190 (1%) Query: 47 PTRRAVLTALASCACLAAIEPAAADDDEQPGANERPQKADRLVRAEGDKAGQVIKSEDLT 106 PTRR+V+ L + A A++ A A+DD+ P +RPQK D LV +EG++ GQ I +DL Sbjct: 24 PTRRSVV--LGTLAACASVTRAMAEDDD-PRKEKRPQKGDLLVFSEGEREGQTITRDDLK 80 Query: 107 LGGPPIRAWPQDPNTSVVRKGSRLNEVVLVKLDPSELDDATRARAPDGIVCYSVVCTHAG 166 +G PPI AWP+D ++VR SRLNEV++V+LDP+ELDD TR RA DGIV YS +C+HAG Sbjct: 81 VGEPPIHAWPKDAANAIVRDASRLNEVLIVRLDPAELDDDTRQRAADGIVAYSAICSHAG 140 Query: 167 CPITAWLKEEQGDKNVLKCLCHNSEYDPRQNAQVVFGPAPRRLAALPLTVADGAITVAAP 226 CP+TAW+K +G+ +V KC+CHNSEYDPR+ AQVVFGPAPRRLAALPL + DGA+ VAAP Sbjct: 141 CPVTAWIKASEGNDDVFKCMCHNSEYDPRRGAQVVFGPAPRRLAALPLIIRDGALVVAAP 200 Query: 227 FVGKVGAQQG 236 F+GKVG QQG Sbjct: 201 FIGKVGGQQG 210 >ref|YP_001239912.1| hypothetical protein BBta_3936 [Bradyrhizobium sp. BTAi1] gb|ABQ36006.1| hypothetical protein BBta_3936 [Bradyrhizobium sp. BTAi1] Length = 192 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/190 (60%), Positives = 146/190 (76%), Gaps = 2/190 (1%) Query: 47 PTRRAVLTALASCACLAAIEPAAADDDEQPGANERPQKADRLVRAEGDKAGQVIKSEDLT 106 PTRR+V+ L + A++ AAA D++ P +RPQK D LV +EG++AGQ I +DL Sbjct: 5 PTRRSVV--LGTLVACASVTGAAAGDEDDPRKEKRPQKGDLLVFSEGERAGQTITPDDLK 62 Query: 107 LGGPPIRAWPQDPNTSVVRKGSRLNEVVLVKLDPSELDDATRARAPDGIVCYSVVCTHAG 166 +G PP+ AWP+D ++VR GSRLNEV+LV+LDP ELD+ TR RA GIV YS +C+HAG Sbjct: 63 VGEPPVHAWPKDAANAIVRDGSRLNEVLLVRLDPDELDEDTRPRAAGGIVAYSAICSHAG 122 Query: 167 CPITAWLKEEQGDKNVLKCLCHNSEYDPRQNAQVVFGPAPRRLAALPLTVADGAITVAAP 226 CP+TAW+K +G+ V KC+CHNSEYDPR+ AQVVFGPAPRRLAALPL + DGA+ +AAP Sbjct: 123 CPVTAWIKATEGNDEVFKCMCHNSEYDPRRGAQVVFGPAPRRLAALPLVIKDGALVIAAP 182 Query: 227 FVGKVGAQQG 236 F+GKVG QQG Sbjct: 183 FIGKVGGQQG 192 >ref|YP_001019561.1| Rieske iron-sulfur protein [Methylibium petroleiphilum PM1] gb|ABM93326.1| Rieske iron-sulfur protein [Methylibium petroleiphilum PM1] Length = 207 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 116/194 (59%), Gaps = 15/194 (7%) Query: 48 TRRAVLTALASCACL------AAIEPAAADDDEQPGANERPQKADRLVRAEGDKAGQVIK 101 +RR L L +CAC+ A + A AD+ A +RP K DRLV D +++ Sbjct: 22 SRREALK-LGACACIGFGLDAAGLNRALADEP----AEQRPTKGDRLVVVGADGTPKLLA 76 Query: 102 SEDLTLGGPPIRAWPQDPNTSVVRKGSRLNEVVLVKLDPSELDDATRARAPDGIVCYSVV 161 + D+ LG P+ A+P D + +VR GSRLN+V+L++L+P LD+ATRAR+ DG++ +S V Sbjct: 77 AADVKLGEKPVFAFPYDADKKLVRDGSRLNKVLLIRLEPGSLDEATRARSADGVLAFSAV 136 Query: 162 CTHAGCPITAWLKEEQGDKNVLKCLCHNSEYDPRQNAQVVFGPAPRRLAALPLTVADGAI 221 CTH GC ++ W+ E + L C CH S +DP Q+ QV+ GPAPR L LP+ + G + Sbjct: 137 CTHQGCDVSEWVPESRS----LLCFCHFSRFDPCQSGQVLAGPAPRSLPHLPIALERGEL 192 Query: 222 TVAAPFVGKVGAQQ 235 V PF G ++ Sbjct: 193 AVNGPFSASPGVKK 206 >ref|YP_004056740.1| rieske (2fe-2S) iron-sulfur domain [Oceanithermus profundus DSM 14977] gb|ADR35567.1| Rieske (2Fe-2S) iron-sulfur domain [Oceanithermus profundus DSM 14977] Length = 208 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 94/166 (56%), Gaps = 12/166 (7%) Query: 45 TDPTRRAVLTA-------LASCACLAAIEPAAADDDEQPGANERPQKADRLVRAEGDKAG 97 TD TRRA++ A L + + L I + P E P+K D V AEGDK G Sbjct: 5 TDTTRRAIVGATVGVGLGLGAISMLVPIGALKPKKEVTP-ETEPPKKGDVFVFAEGDKKG 63 Query: 98 QVIKSEDLTLGGPPIRAWPQDPNTSVVRKGSRLNEVVLVKLDPSELDDATRARAPDGIVC 157 + I +DL GGP + A+P+DP T V++ G R N V+L++LDP+EL T A DG V Sbjct: 64 EEITFDDLPKGGPFVLAFPKDPKTGVIKNGERNNMVLLIRLDPAELSPETAEYAADGTVA 123 Query: 158 YSVVCTHAGCPITAWLKEEQGDKNVLKCLCHNSEYDPRQNAQVVFG 203 YS +CTH GC ++ W+ DK L C CH YDPRQ A+VV G Sbjct: 124 YSAICTHLGCTVSDWVA----DKGDLLCPCHKGIYDPRQGAKVVGG 165