BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0173.0018.p (388 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110] >g... 669 0.0 ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]... 628 e-178 ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS 27... 622 e-176 ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb... 593 e-167 ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A] ... 590 e-166 >ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110] dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110] Length = 389 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/389 (84%), Positives = 351/389 (90%), Gaps = 1/389 (0%) Query: 1 MGSIDKYIFKTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPAL 60 MGSID+YIF+TTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGIT LV+PAL Sbjct: 1 MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLVVPAL 60 Query: 61 VLIIAPIALMIAISHTLNKLATDSEIIVMNAAGFSPIRLFRPFFLATCVVAALVAFIGAY 120 VLII+PIALMIAISHTLNKLATDSEIIVMNAAGFSP RLF PFF ATCVVA LVAFI AY Sbjct: 61 VLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAAY 120 Query: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIRERLPGGVLGGVFVDDRRD 180 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLD+NLTIRIRERLPGG+L G+F+DDRRD Sbjct: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDKNLTIRIRERLPGGILAGIFIDDRRD 180 Query: 181 PQERVTIIADHGTVQKTDRGSYLVLYDGNLQRFEVGKRDPALVAFARYAFDMSKFS-QGR 239 P ERV+I+A+HG V K D GS+LVL GNLQRFEVGKRDPALVAF RY FDMSKFS QGR Sbjct: 181 PNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMSKFSGQGR 240 Query: 240 DVTLGIRERYLWELMWPDEEDKTYQQLSGQFFAELHDRFMAPIYPFAFAALTFAFLGAPR 299 DVTLGIRERYLWEL P E+D Y+Q+ GQF + LHD +APIYPFAFA LTFAFLGAPR Sbjct: 241 DVTLGIRERYLWELFSPSEDDPVYKQIPGQFRSALHDSLLAPIYPFAFAVLTFAFLGAPR 300 Query: 300 TTRQSRNFSIGGSVFAVFGLRMVGFACSVMAVKTPLAALVQYLMLFGGIGIGIWMIVGGV 359 TTRQSRNFSIG S+ AVFGLRM GFACSVMAVK+P A LVQY M+ G IG+G+WMIVGG+ Sbjct: 301 TTRQSRNFSIGSSIVAVFGLRMAGFACSVMAVKSPAAVLVQYAMVLGAIGVGMWMIVGGI 360 Query: 360 VVEPPPRLMEAINRNNERIARLFRRPATA 388 VVEPPPRLMEAINR+N RIARLF RPATA Sbjct: 361 VVEPPPRLMEAINRSNARIARLFGRPATA 389 >ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1] gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1] Length = 389 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 321/389 (82%), Positives = 351/389 (90%), Gaps = 1/389 (0%) Query: 1 MGSIDKYIFKTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPAL 60 MGSID+YIF+TTLASFA+VLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIP+L Sbjct: 1 MGSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60 Query: 61 VLIIAPIALMIAISHTLNKLATDSEIIVMNAAGFSPIRLFRPFFLATCVVAALVAFIGAY 120 + +IAPIALMIA+SHTLNKLATDSEIIVMNAAG SPIRLF PF ATCVVA LV FI A+ Sbjct: 61 LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAAF 120 Query: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIRERLPGGVLGGVFVDDRRD 180 APDG+RRIKQWDAEITADVL NILQPGRFAQLDQNLTIRIRER PGG L G+ +DDRRD Sbjct: 121 FAPDGLRRIKQWDAEITADVLANILQPGRFAQLDQNLTIRIRERQPGGELQGILIDDRRD 180 Query: 181 PQERVTIIADHGTVQKTDRGSYLVLYDGNLQRFEVGKRDPALVAFARYAFDMSKFS-QGR 239 P+ER+TIIA+ GTV K GS+LVL DGNL+RFEVGKR+PA+VAFARYAFDMSKFS QGR Sbjct: 181 PKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMSKFSNQGR 240 Query: 240 DVTLGIRERYLWELMWPDEEDKTYQQLSGQFFAELHDRFMAPIYPFAFAALTFAFLGAPR 299 DVTLGIRERYLWELM P E+D Y+Q+ GQF ELHDRF+APIYPFAFAALTFAFLGAPR Sbjct: 241 DVTLGIRERYLWELMAPAEDDPIYKQIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAPR 300 Query: 300 TTRQSRNFSIGGSVFAVFGLRMVGFACSVMAVKTPLAALVQYLMLFGGIGIGIWMIVGGV 359 TTRQSRNFS G ++ AVFG+RM GFACSVM VKTP+AALVQYLMLFG +G+ IW+IVGGV Sbjct: 301 TTRQSRNFSFGSAILAVFGVRMAGFACSVMTVKTPVAALVQYLMLFGVLGLSIWIIVGGV 360 Query: 360 VVEPPPRLMEAINRNNERIARLFRRPATA 388 VVEPP RLMEAINR+N RIARLFRRPA A Sbjct: 361 VVEPPARLMEAINRSNARIARLFRRPAAA 389 >ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS 278] emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS 278] Length = 389 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 315/389 (80%), Positives = 350/389 (89%), Gaps = 1/389 (0%) Query: 1 MGSIDKYIFKTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPAL 60 MGSID+YIF+TTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIP+L Sbjct: 1 MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60 Query: 61 VLIIAPIALMIAISHTLNKLATDSEIIVMNAAGFSPIRLFRPFFLATCVVAALVAFIGAY 120 + +IAPIALMIA+SHTLNKLATDSEIIVMNAAG SPIRLF PF ATCVVA LV + +Y Sbjct: 61 LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLASY 120 Query: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIRERLPGGVLGGVFVDDRRD 180 +APDG+RRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRI ER PGG L + +DDRRD Sbjct: 121 IAPDGLRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIGERQPGGELKNILIDDRRD 180 Query: 181 PQERVTIIADHGTVQKTDRGSYLVLYDGNLQRFEVGKRDPALVAFARYAFDMSKFS-QGR 239 P+ER+TIIA+ GTV K GS+LVL DGNL+RFE+GKR+PA+VAFARYAFDMSKFS QGR Sbjct: 181 PKERITIIAEKGTVVKNADGSFLVLEDGNLERFEIGKREPAMVAFARYAFDMSKFSNQGR 240 Query: 240 DVTLGIRERYLWELMWPDEEDKTYQQLSGQFFAELHDRFMAPIYPFAFAALTFAFLGAPR 299 DVTLGIRERY+WELM P E+D Y+Q+ GQF ELHDRF+APIYPFAFAALTFAFLGAPR Sbjct: 241 DVTLGIRERYVWELMAPAEDDPIYKQIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAPR 300 Query: 300 TTRQSRNFSIGGSVFAVFGLRMVGFACSVMAVKTPLAALVQYLMLFGGIGIGIWMIVGGV 359 TTRQSRNFS G ++ AVFG+RM GFACSVM VKTP+AAL+QY+MLFG + + IW+IVGGV Sbjct: 301 TTRQSRNFSFGSAILAVFGVRMAGFACSVMTVKTPIAALIQYVMLFGVLALSIWIIVGGV 360 Query: 360 VVEPPPRLMEAINRNNERIARLFRRPATA 388 VVEPP RLMEAINR+N RIARLFRRPATA Sbjct: 361 VVEPPARLMEAINRSNARIARLFRRPATA 389 >ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255] gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255] Length = 390 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 304/390 (77%), Positives = 340/390 (87%), Gaps = 2/390 (0%) Query: 1 MGSIDKYIFKTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPAL 60 MGSIDKYIF+TTLASF +VLVSLTGVIWITQALRGIDLMTSQGQTILTFLGIT L IP L Sbjct: 1 MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60 Query: 61 VLIIAPIALMIAISHTLNKLATDSEIIVMNAAGFSPIRLFRPFFLATCVVAALVAFIGAY 120 VLII+PIALMIA+SHTL+KLATDSEIIVMNAAG SP RLFRPF AT VVA LVAFI AY Sbjct: 61 VLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAAY 120 Query: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIRERLPGGVLGGVFVDDRRD 180 LAPDGMRR+KQWDAEITADVL N+LQPGRFAQLD NLTIRIRER PGG L G+F+DDRR+ Sbjct: 121 LAPDGMRRLKQWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180 Query: 181 PQERVTIIADHGTVQKTDRGSYLVLYDGNLQRFEVGKRDPALVAFARYAFDMSKFS-QGR 239 ER++IIADHGTV K D+GS+L+L DG+L+RFE GKR+PA+VAF RYAFDMSKFS +G Sbjct: 181 SNERLSIIADHGTVMKNDQGSFLILEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240 Query: 240 DVTLGIRERYLWELMWPDEEDKTYQQLSGQFFAELHDRFMAPIYPFAFAALTFAFLGAPR 299 DV GIRERYLWEL+ PDE+D QQL GQF AELHDRF APIYPFAFAALTFAFLG+PR Sbjct: 241 DVVYGIRERYLWELIAPDEKDPLVQQLRGQFRAELHDRFTAPIYPFAFAALTFAFLGSPR 300 Query: 300 TTRQSRNFSIGGSVFAVFGLRMVGFACSVMAVKTPLAALVQYLMLFGGIGIGIWMIVGGV 359 TTRQSRNFS+G ++ AVFGLRM GFA SVM VK+P+AAL+QYL+LFG IGI + +I+ G+ Sbjct: 301 TTRQSRNFSMGAAIAAVFGLRMAGFALSVMTVKSPMAALLQYLLLFGAIGISLRVIIAGI 360 Query: 360 VVEPPPRLMEAINRNNERIARLFR-RPATA 388 V+EPP LMEAINR+N RI RL R RPA A Sbjct: 361 VLEPPAALMEAINRSNARILRLLRKRPAFA 390 >ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A] gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A] Length = 390 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 300/390 (76%), Positives = 337/390 (86%), Gaps = 2/390 (0%) Query: 1 MGSIDKYIFKTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPAL 60 MGSID+YIF+TTLASF +VLVSLTGVIWITQALRGIDLMTSQGQTILTFLGIT L IP L Sbjct: 1 MGSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60 Query: 61 VLIIAPIALMIAISHTLNKLATDSEIIVMNAAGFSPIRLFRPFFLATCVVAALVAFIGAY 120 VLII+PIALMIAISHTL+KLATDSEIIVMNAAG SP RLFRPF AT +VA LVAFI AY Sbjct: 61 VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAAY 120 Query: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIRERLPGGVLGGVFVDDRRD 180 LAPDGMRR+K+WDAEITADVL N+LQPGRFAQLD NLTIRIRER PGG L G+F+DDRR+ Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180 Query: 181 PQERVTIIADHGTVQKTDRGSYLVLYDGNLQRFEVGKRDPALVAFARYAFDMSKFS-QGR 239 ER++IIADHGTV K D+GS+LVL DG+L+RFE GKR+PA+VAF RYAFDMSKFS +G Sbjct: 181 SDERLSIIADHGTVMKNDKGSFLVLEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240 Query: 240 DVTLGIRERYLWELMWPDEEDKTYQQLSGQFFAELHDRFMAPIYPFAFAALTFAFLGAPR 299 DV GIRERYLWEL+ PD+ D QQL GQF AELHDRF APIYPF FAALTFAFLG PR Sbjct: 241 DVVYGIRERYLWELIVPDQNDPVVQQLQGQFRAELHDRFTAPIYPFVFAALTFAFLGTPR 300 Query: 300 TTRQSRNFSIGGSVFAVFGLRMVGFACSVMAVKTPLAALVQYLMLFGGIGIGIWMIVGGV 359 TTRQSRNFS+G ++ AVFGLRM GFA SVM VK+PLAAL+QYL+LFG IGI + +IV G+ Sbjct: 301 TTRQSRNFSMGAAIAAVFGLRMAGFALSVMTVKSPLAALLQYLLLFGAIGISLRVIVAGI 360 Query: 360 VVEPPPRLMEAINRNNERIARLF-RRPATA 388 V+EPP L+EAINR+N R+ RL +RPA A Sbjct: 361 VLEPPAALIEAINRSNARLLRLLGKRPAVA 390