BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0173.0016.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobi... 264 3e-69 ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium ... 259 1e-67 ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobi... 253 1e-65 ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomona... 241 3e-62 ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomona... 240 5e-62 >ref|YP_001205354.1| DNA polymerase III subunit chi [Bradyrhizobium sp. ORS 278] emb|CAL77123.1| putative DNA polymerase III, chi subunit, HolC [Bradyrhizobium sp. ORS 278] Length = 150 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/150 (82%), Positives = 136/150 (90%) Query: 1 MTEVLFYHLQNMTLESVLPPLLEKSLERGWRVVVQSTSQERAETLDAHLWTYSDDSFLPH 60 MTEVLFYHLQ+MTLE VLPPLLEKSLERGWRVVVQSTS+ERA+ LDAHLWTY DDSFLPH Sbjct: 1 MTEVLFYHLQSMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 61 ATSRVADAQDQPIILSIEEGNPNQANVRFLVDNAALPADCDSYERVVLVFNGDDPDAVAS 120 AT RVAD +QPI+L+IEE NPN+ANVRFLVDNA LP+D SYER+VLVFNGDDPDA+A+ Sbjct: 61 ATWRVADVAEQPIVLAIEESNPNRANVRFLVDNAPLPSDSQSYERMVLVFNGDDPDALAA 120 Query: 121 ARESWTACKARGFEVTYWQTDERGRWQRRQ 150 AR +WT CK RGFEVTYWQ DERGRWQRRQ Sbjct: 121 ARSAWTDCKNRGFEVTYWQADERGRWQRRQ 150 >ref|NP_770749.1| DNA polymerase III subunit chi [Bradyrhizobium japonicum USDA 110] dbj|BAC49374.1| blr4109 [Bradyrhizobium japonicum USDA 110] Length = 150 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/149 (81%), Positives = 134/149 (89%) Query: 1 MTEVLFYHLQNMTLESVLPPLLEKSLERGWRVVVQSTSQERAETLDAHLWTYSDDSFLPH 60 MTEVLFYHLQNMT+E+VLPPLLEKSLERGWRVVVQSTS+ERA+ LDAHLWTY DDSFLPH Sbjct: 1 MTEVLFYHLQNMTVENVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 61 ATSRVADAQDQPIILSIEEGNPNQANVRFLVDNAALPADCDSYERVVLVFNGDDPDAVAS 120 AT RV DA DQPI+L+IEE NPN A+VRFLVDNAALP D YER+VL+FNGDDPDA+A Sbjct: 61 ATWRVNDAADQPIVLAIEEDNPNGAHVRFLVDNAALPQDAQGYERMVLLFNGDDPDALAL 120 Query: 121 ARESWTACKARGFEVTYWQTDERGRWQRR 149 AR +WT CKARGF+VTYWQ DERGRWQRR Sbjct: 121 ARSAWTDCKARGFDVTYWQADERGRWQRR 149 >ref|YP_001239815.1| DNA polymerase III subunit chi [Bradyrhizobium sp. BTAi1] gb|ABQ35909.1| DNA polymerase III, chi subunit [Bradyrhizobium sp. BTAi1] Length = 150 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/150 (82%), Positives = 135/150 (90%) Query: 1 MTEVLFYHLQNMTLESVLPPLLEKSLERGWRVVVQSTSQERAETLDAHLWTYSDDSFLPH 60 MTEVLFYHLQNMTLE VLPPLLEKSLERGWRVVVQSTS+ERA+ LDAHLWTY DDSFLPH Sbjct: 1 MTEVLFYHLQNMTLEGVLPPLLEKSLERGWRVVVQSTSEERADALDAHLWTYRDDSFLPH 60 Query: 61 ATSRVADAQDQPIILSIEEGNPNQANVRFLVDNAALPADCDSYERVVLVFNGDDPDAVAS 120 AT RVAD DQPI+L++EE NPNQANVRFLVDNA LP+D +YER+VLVFNGDD +A+A+ Sbjct: 61 ATWRVADVADQPIVLAVEESNPNQANVRFLVDNAPLPSDAHTYERMVLVFNGDDDEALAA 120 Query: 121 ARESWTACKARGFEVTYWQTDERGRWQRRQ 150 AR +WT CK RGFEVTYWQ DERGRWQRRQ Sbjct: 121 ARAAWTDCKTRGFEVTYWQADERGRWQRRQ 150 >ref|NP_948398.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris CGA009] ref|YP_001992445.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris TIE-1] emb|CAE28500.1| hypothetical protein RPA3059 [Rhodopseudomonas palustris CGA009] gb|ACF01970.1| DNA polymerase III chi subunit HolC [Rhodopseudomonas palustris TIE-1] Length = 150 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 114/149 (76%), Positives = 126/149 (84%) Query: 1 MTEVLFYHLQNMTLESVLPPLLEKSLERGWRVVVQSTSQERAETLDAHLWTYSDDSFLPH 60 MTEVLFYHLQ T+E VLPPLLEKSL RGWRVVVQSTS+ERA+ LD+HLWTY DDSFLPH Sbjct: 1 MTEVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSTSEERADALDSHLWTYRDDSFLPH 60 Query: 61 ATSRVADAQDQPIILSIEEGNPNQANVRFLVDNAALPADCDSYERVVLVFNGDDPDAVAS 120 AT RVADA QPI+L+ EGNPN A VRFLVDNAALP D SYER+VL+FNGDD +AVA Sbjct: 61 ATWRVADAAHQPILLTTGEGNPNGAKVRFLVDNAALPEDSGSYERMVLLFNGDDDEAVAM 120 Query: 121 ARESWTACKARGFEVTYWQTDERGRWQRR 149 AR++W CKA+ FEVTYWQ DE GRWQRR Sbjct: 121 ARDAWKQCKAKAFEVTYWQADEAGRWQRR 149 >ref|YP_570091.1| DNA polymerase III subunit chi [Rhodopseudomonas palustris BisB5] gb|ABE40190.1| DNA polymerase III, chi subunit [Rhodopseudomonas palustris BisB5] Length = 150 Score = 240 bits (612), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 113/150 (75%), Positives = 127/150 (84%) Query: 1 MTEVLFYHLQNMTLESVLPPLLEKSLERGWRVVVQSTSQERAETLDAHLWTYSDDSFLPH 60 MT+VLFYHLQ T+E VLPPLLEKSL RGWRVVVQS S+ER ETLDAHLWTY DDSFLPH Sbjct: 1 MTDVLFYHLQGRTIEQVLPPLLEKSLARGWRVVVQSGSEERTETLDAHLWTYRDDSFLPH 60 Query: 61 ATSRVADAQDQPIILSIEEGNPNQANVRFLVDNAALPADCDSYERVVLVFNGDDPDAVAS 120 ATSRVADA QPI+L+ EEGNPN A VRFL+DN ALPAD +SYER+VL+F+GDD DAVA Sbjct: 61 ATSRVADAAHQPIVLTAEEGNPNAAMVRFLLDNVALPADAESYERMVLLFDGDDDDAVAM 120 Query: 121 ARESWTACKARGFEVTYWQTDERGRWQRRQ 150 AR +W K+RGF+VTYWQ D GRWQRR+ Sbjct: 121 ARVAWKQSKSRGFDVTYWQADAAGRWQRRE 150