BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0173.0009.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770760.1| hypothetical protein blr4120 [Bradyrhizobium ja... 412 e-113 ref|YP_532192.1| hypothetical protein RPC_2319 [Rhodopseudomonas... 361 7e-98 ref|NP_948394.1| TerC family integral membrane protein [Rhodopse... 348 5e-94 ref|YP_004108696.1| Integral membrane protein TerC [Rhodopseudom... 340 1e-91 ref|ZP_08629548.1| hypothetical protein CSIRO_2639 [Bradyrhizobi... 330 1e-88 >ref|NP_770760.1| hypothetical protein blr4120 [Bradyrhizobium japonicum USDA 110] dbj|BAC49385.1| blr4120 [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/285 (80%), Positives = 247/285 (86%), Gaps = 6/285 (2%) Query: 1 VDWLWQIFDPAYIGAFFTEFRNEMATPTFWVAVGKIIWINVLLSGDNALVIALACRGLAP 60 ++WLWQIFDPA IGAFFT+FRNEMA PTFW+AVGKIIWIN+LLSGDNALVIALACRGL P Sbjct: 1 MNWLWQIFDPATIGAFFTQFRNEMAEPTFWIAVGKIIWINILLSGDNALVIALACRGLKP 60 Query: 61 RQRLWGMILGAAAAVLLRVIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPEQEDEDSV 120 R RLWGMILGA AAVLLR+IFTGIVASLMELPYLKLVGGLALIVIAAKLLVPE EDED V Sbjct: 61 RHRLWGMILGAGAAVLLRIIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPENEDEDGV 120 Query: 121 HAASHLWAAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISVPLIVAGAALIMAL 180 +ASHLW AVQIVVVADIVMSLDNVIAVAAAANGSVPLL+LGLAISVPLIVAGAALIMAL Sbjct: 121 ESASHLWQAVQIVVVADIVMSLDNVIAVAAAANGSVPLLILGLAISVPLIVAGAALIMAL 180 Query: 181 LTKLPVLVWAGAALLGWIAGDVIATDPAVHPKLDALFAGPFGAKLDSWLTSVGMSPQFAH 240 L KLPVLVWAGAALLGWIAG+VIATDP V PKL LF GPFGA LD+ L ++ + QF H Sbjct: 181 LAKLPVLVWAGAALLGWIAGEVIATDPGVAPKLHTLFDGPFGASLDNMLGALRIPAQFGH 240 Query: 241 GGNGGEITLAVLGIIVVLVVGSIWRRHALRKA------KHAAKAA 279 GG GGE A LG+IVVLV G+IWRR +L +A +HA +A Sbjct: 241 GGGGGEYFCAALGVIVVLVAGTIWRRRSLSQAALESSERHAKASA 285 >ref|YP_532192.1| hypothetical protein RPC_2319 [Rhodopseudomonas palustris BisB18] gb|ABD87873.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 282 Score = 361 bits (926), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 198/278 (71%), Positives = 227/278 (81%), Gaps = 1/278 (0%) Query: 1 VDWLWQIFDPAYIGAFFTEFRNEMATPTFWVAVGKIIWINVLLSGDNALVIALACRGLAP 60 +DW+ QIFD +G +F +EM PTFW+AVGKIIWINVLLSGDNALVIALACR L P Sbjct: 1 MDWVLQIFDSVSLGTLAGQFHSEMQQPTFWLAVGKIIWINVLLSGDNALVIALACRALDP 60 Query: 61 RQRLWGMILGAAAAVLLRVIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPEQEDEDSV 120 RQRLWGMILGA AV+LR+IFTGIVA+LMELPYLKL+GGL LIVIAAKLLVP+++DE+S+ Sbjct: 61 RQRLWGMILGAGIAVVLRIIFTGIVATLMELPYLKLIGGLILIVIAAKLLVPDEDDENSI 120 Query: 121 HAASHLWAAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISVPLIVAGAALIMAL 180 AASHLW AVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAIS+PLIVAGAALIM + Sbjct: 121 KAASHLWRAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISIPLIVAGAALIMLV 180 Query: 181 LTKLPVLVWAGAALLGWIAGDVIATDPAVHPKLDALFAGPFGAKLDSWLTSVGMSPQFAH 240 L +LP+LVWAGAALLGWIAGD++ATDPAVHP L L G G LD G++ A Sbjct: 181 LNRLPILVWAGAALLGWIAGDIMATDPAVHPWLQRLLDGQIGIDLDLTSPLFGVAKHLAG 240 Query: 241 GGNGGEITLAVLGIIVVLVVGSIWRRHALRK-AKHAAK 277 N GE TL++ G IVVL VG++WRR LR+ A AA+ Sbjct: 241 FENLGEFTLSLAGAIVVLSVGTLWRRSKLREVAADAAR 278 >ref|NP_948394.1| TerC family integral membrane protein [Rhodopseudomonas palustris CGA009] ref|YP_001992441.1| hypothetical protein Rpal_3465 [Rhodopseudomonas palustris TIE-1] emb|CAE28496.1| Integral membrane protein TerC family [Rhodopseudomonas palustris CGA009] gb|ACF01966.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 273 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 191/279 (68%), Positives = 220/279 (78%), Gaps = 9/279 (3%) Query: 1 VDWLWQIFDPAYIGAFFTEFRNEMATPTFWVAVGKIIWINVLLSGDNALVIALACRGLAP 60 +DW+ +FDPA + +F++ + P FW++V KIIWINVLLSGDNALVIALACRGL P Sbjct: 1 MDWVLHVFDPATFWSVVAQFKSGVQQPEFWISVSKIIWINVLLSGDNALVIALACRGLKP 60 Query: 61 RQRLWGMILGAAAAVLLRVIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPEQEDEDSV 120 RLWGM+LGA AAVLLR++FTGIVA+LME PYLKLVGGLAL+VIAAKL+VPE EDEDSV Sbjct: 61 NHRLWGMVLGAGAAVLLRIVFTGIVATLMEWPYLKLVGGLALLVIAAKLVVPETEDEDSV 120 Query: 121 HAASHLWAAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISVPLIVAGAALIMAL 180 AASHL AVQIVVVADI+MSLDNVIAVAAAA+GSVPLL+LGLAISVPLIVAGAALI+ + Sbjct: 121 QAASHLLHAVQIVVVADIIMSLDNVIAVAAAADGSVPLLILGLAISVPLIVAGAALILMV 180 Query: 181 LTKLPVLVWAGAALLGWIAGDVIATDPAVHP---KLDALFAGPFGAKLDSWLTSVGMSPQ 237 L KLP+LVWAGAALLGWIAG VIATDP P KLDA P G +LD+ VGM Sbjct: 181 LEKLPILVWAGAALLGWIAGQVIATDPVALPLVHKLDA----PIGGQLDALFAMVGMYTH 236 Query: 238 FAHGGNGGEITLAVLGIIVVLVVGSIWRRHALRKAKHAA 276 A G+ GE AV+G IVVL+ GSIWR + A+ AA Sbjct: 237 LASNGSVGEHLFAVVGAIVVLIAGSIWRSR--QSAEQAA 273 >ref|YP_004108696.1| Integral membrane protein TerC [Rhodopseudomonas palustris DX-1] gb|ADU43963.1| Integral membrane protein TerC [Rhodopseudomonas palustris DX-1] Length = 273 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 186/270 (68%), Positives = 214/270 (79%), Gaps = 7/270 (2%) Query: 1 VDWLWQIFDPAYIGAFFTEFRNEMATPTFWVAVGKIIWINVLLSGDNALVIALACRGLAP 60 +DW+ +FDPA + +F++++ P FW++VGKIIWINVLLSGDNALVIALACRGL P Sbjct: 1 MDWVLHVFDPATFWSIVAQFKSDVQQPEFWISVGKIIWINVLLSGDNALVIALACRGLKP 60 Query: 61 RQRLWGMILGAAAAVLLRVIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPEQEDEDSV 120 RLWGM+LGA AAV+LR+IFTGIVA+LME PYLKLVGGLAL+VIAAKL+VP+ EDEDSV Sbjct: 61 HHRLWGMVLGAGAAVMLRIIFTGIVATLMEWPYLKLVGGLALLVIAAKLVVPDNEDEDSV 120 Query: 121 HAASHLWAAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISVPLIVAGAALIMAL 180 AASHL AVQIVVVADIVMSLDNVIAVAAAA+G+V LL+LGLAISVPLIVAGAALI+ + Sbjct: 121 RAASHLLHAVQIVVVADIVMSLDNVIAVAAAADGNVVLLILGLAISVPLIVAGAALILMV 180 Query: 181 LTKLPVLVWAGAALLGWIAGDVIATDPAVHP---KLDALFAGPFGAKLDSWLTSVGMSPQ 237 L KLPVLVWAGAALLGWIAG VIATD A P KLDA P G +LD+ +GM Sbjct: 181 LEKLPVLVWAGAALLGWIAGQVIATDAAALPFVHKLDA----PIGTQLDALFGMMGMYTH 236 Query: 238 FAHGGNGGEITLAVLGIIVVLVVGSIWRRH 267 A G GE AV G +VVL+ GSIWR Sbjct: 237 LAGNGTVGEHLFAVSGAVVVLIAGSIWRSR 266 >ref|ZP_08629548.1| hypothetical protein CSIRO_2639 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08041.1| hypothetical protein CSIRO_2639 [Bradyrhizobiaceae bacterium SG-6C] Length = 279 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 190/279 (68%), Positives = 221/279 (79%) Query: 1 VDWLWQIFDPAYIGAFFTEFRNEMATPTFWVAVGKIIWINVLLSGDNALVIALACRGLAP 60 ++W+ QIFDPA IG T+F NE+ P FWVA+ KIIWINVLLSGDNALVIALACRGL P Sbjct: 1 MNWIAQIFDPATIGGLITQFENEIQHPQFWVALTKIIWINVLLSGDNALVIALACRGLQP 60 Query: 61 RQRLWGMILGAAAAVLLRVIFTGIVASLMELPYLKLVGGLALIVIAAKLLVPEQEDEDSV 120 +QR+WGMILGA AV LR+IFT IV +LM +P+LKLVGGLAL+ IAAKLLVPE+EDED V Sbjct: 61 KQRVWGMILGAGVAVFLRIIFTFIVVTLMTVPFLKLVGGLALLFIAAKLLVPEKEDEDGV 120 Query: 121 HAASHLWAAVQIVVVADIVMSLDNVIAVAAAANGSVPLLVLGLAISVPLIVAGAALIMAL 180 AA+HLWAAV+IV VADI+MSLDNVIAVAAAANGS LL+LGLAIS+P+IVAGAALIMAL Sbjct: 121 QAAAHLWAAVRIVAVADIIMSLDNVIAVAAAANGSAILLILGLAISIPMIVAGAALIMAL 180 Query: 181 LTKLPVLVWAGAALLGWIAGDVIATDPAVHPKLDALFAGPFGAKLDSWLTSVGMSPQFAH 240 L ++P LVW GAALLGWIAG+VIATDPAV P L + G +D+ G + Sbjct: 181 LDRVPALVWLGAALLGWIAGEVIATDPAVAPWLHRVLDGHIALDVDTTSAMFGFAKHLKF 240 Query: 241 GGNGGEITLAVLGIIVVLVVGSIWRRHALRKAKHAAKAA 279 G GE+TLAVLG+IVVLVVGSIWR+ ALR+ A A Sbjct: 241 NGEIGELTLAVLGVIVVLVVGSIWRKRALREQHEAPATA 279