BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0001.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA...   301   2e-80
ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2...   295   1e-78
ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A] >gi|...   294   3e-78
ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255...   291   2e-77
ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris T...   291   2e-77

>ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score =  301 bits (771), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 159/168 (94%)

Query: 5   VLIEVAAWREQEAQSRDVPRSRVLKDDAVGDIATHAPTSLEKLGNLRSLPKGFERSKWGA 64
           VL+EVAAWREQEAQSRDVPRSR+LKDDAVGDIA HAPTSLE+L NLRSLPKGF+RSKWGA
Sbjct: 214 VLMEVAAWREQEAQSRDVPRSRILKDDAVGDIAVHAPTSLERLANLRSLPKGFDRSKWGA 273

Query: 65  DIIAAVQRGLARDQATLPKLEKPRNNSNGAATVELLKVLLRMTSERHGVASKVIATVDDL 124
           DI+AAVQRG+ARD ATLPK+EKPRNN NGAATVELLKVLLRMTSERH VASKVIATVDDL
Sbjct: 274 DIVAAVQRGVARDPATLPKIEKPRNNGNGAATVELLKVLLRMTSERHAVASKVIATVDDL 333

Query: 125 EQIAASDQAEVGALHGWRRELFGEAALKLKHGQLALAIDKGRVVRVDR 172
           EQIA  D+A+VGAL GWRRELFGEAAL LKHG+LALAIDKG+VVRVDR
Sbjct: 334 EQIACDDEADVGALQGWRRELFGEAALALKHGRLALAIDKGKVVRVDR 381


>ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score =  295 bits (756), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/169 (85%), Positives = 158/169 (93%)

Query: 5   VLIEVAAWREQEAQSRDVPRSRVLKDDAVGDIATHAPTSLEKLGNLRSLPKGFERSKWGA 64
           VL+EVAAWREQEAQ+RDVPRSRVLKDDA+GDIATHAPTSLE+L NLRSLPKGF+RSKWG+
Sbjct: 214 VLMEVAAWREQEAQTRDVPRSRVLKDDALGDIATHAPTSLERLANLRSLPKGFDRSKWGS 273

Query: 65  DIIAAVQRGLARDQATLPKLEKPRNNSNGAATVELLKVLLRMTSERHGVASKVIATVDDL 124
           +I+AAVQRGLARD  TLPK++KPRNNSNG A VELLKVLLRMTSERH VA+KVIATVDDL
Sbjct: 274 EIVAAVQRGLARDPQTLPKIDKPRNNSNGGAIVELLKVLLRMTSERHAVAAKVIATVDDL 333

Query: 125 EQIAASDQAEVGALHGWRRELFGEAALKLKHGQLALAIDKGRVVRVDRG 173
           EQIA  D+AEVGAL GWRRELFGEAAL LKHGQLALAI+KGRV+ VDRG
Sbjct: 334 EQIACDDKAEVGALRGWRRELFGEAALALKHGQLALAIEKGRVIHVDRG 382


>ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score =  294 bits (753), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/168 (85%), Positives = 159/168 (94%)

Query: 5   VLIEVAAWREQEAQSRDVPRSRVLKDDAVGDIATHAPTSLEKLGNLRSLPKGFERSKWGA 64
           VL+EVAAWREQEAQSR++PRSRVLKDDAVGDIATHAP S E+L  LRSLPKGFE+S+WGA
Sbjct: 252 VLMEVAAWREQEAQSRNIPRSRVLKDDAVGDIATHAPASPERLATLRSLPKGFEKSQWGA 311

Query: 65  DIIAAVQRGLARDQATLPKLEKPRNNSNGAATVELLKVLLRMTSERHGVASKVIATVDDL 124
           DI+AAVQRGLARD  TLPK+EKPRNNSNGAATVELLKVLLRMTSERH VASK+IATVDDL
Sbjct: 312 DIVAAVQRGLARDPGTLPKIEKPRNNSNGAATVELLKVLLRMTSERHAVASKIIATVDDL 371

Query: 125 EQIAASDQAEVGALHGWRRELFGEAALKLKHGQLALAIDKGRVVRVDR 172
           E+IAA D+A+VGALHGWRRELFGEAAL LKHG+LALAI+KGRVVRV+R
Sbjct: 372 ERIAADDKADVGALHGWRRELFGEAALALKHGRLALAIEKGRVVRVER 419


>ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score =  291 bits (745), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/169 (84%), Positives = 158/169 (93%)

Query: 5   VLIEVAAWREQEAQSRDVPRSRVLKDDAVGDIATHAPTSLEKLGNLRSLPKGFERSKWGA 64
           VL+EVAAWREQEAQSR++PRSRVLKDDAVGDIA HAP+S E+L  LRSLPKGFERS+WGA
Sbjct: 214 VLMEVAAWREQEAQSRNIPRSRVLKDDAVGDIAIHAPSSPERLATLRSLPKGFERSQWGA 273

Query: 65  DIIAAVQRGLARDQATLPKLEKPRNNSNGAATVELLKVLLRMTSERHGVASKVIATVDDL 124
           DI+AAVQRGLARD  TLP++EKPRNNSNGAATVELLKVLLRMTSERH VASKVIATVDDL
Sbjct: 274 DIVAAVQRGLARDPRTLPRIEKPRNNSNGAATVELLKVLLRMTSERHAVASKVIATVDDL 333

Query: 125 EQIAASDQAEVGALHGWRRELFGEAALKLKHGQLALAIDKGRVVRVDRG 173
           E+I A D+A+VGALHGWRRELFGEAAL LKHG+LALAI+KGRVVRV+R 
Sbjct: 334 ERIVADDEADVGALHGWRRELFGEAALALKHGRLALAIEKGRVVRVERA 382


>ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score =  291 bits (745), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/169 (83%), Positives = 158/169 (93%)

Query: 5   VLIEVAAWREQEAQSRDVPRSRVLKDDAVGDIATHAPTSLEKLGNLRSLPKGFERSKWGA 64
           VL+E+AAWREQEAQSRDVPRSRVLKDDA+GDIATHAPTSLEKL NLRSLPKGF+RSKWG 
Sbjct: 214 VLMEIAAWREQEAQSRDVPRSRVLKDDALGDIATHAPTSLEKLANLRSLPKGFDRSKWGT 273

Query: 65  DIIAAVQRGLARDQATLPKLEKPRNNSNGAATVELLKVLLRMTSERHGVASKVIATVDDL 124
           +I+AAVQRGLARD ATLPK++KPRNNSNG A VELLKVLLRMTSERH VA+KVIATVDDL
Sbjct: 274 EIVAAVQRGLARDMATLPKIDKPRNNSNGTAIVELLKVLLRMTSERHAVAAKVIATVDDL 333

Query: 125 EQIAASDQAEVGALHGWRRELFGEAALKLKHGQLALAIDKGRVVRVDRG 173
           EQIAA D A+VGAL GWRRELFGEAAL LKHG+L+LAI++G+V++VDR 
Sbjct: 334 EQIAADDNADVGALRGWRRELFGEAALALKHGRLSLAIERGKVIQVDRN 382