BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0011.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577191.1| hypothetical protein Nham_1923 [Nitrobacter ham... 429 e-118 ref|YP_001207200.1| ABC transporter substrate-binding protein [B... 424 e-116 ref|YP_001241606.1| ABC transporter substrate-binding protein [B... 414 e-114 ref|YP_002289806.1| ABC transporter [Oligotropha carboxidovorans... 411 e-112 ref|YP_533886.1| hypothetical protein RPC_4041 [Rhodopseudomonas... 407 e-111 >ref|YP_577191.1| hypothetical protein Nham_1923 [Nitrobacter hamburgensis X14] gb|ABE62731.1| Mammalian cell entry related protein [Nitrobacter hamburgensis X14] Length = 369 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/364 (59%), Positives = 272/364 (74%) Query: 1 MEIRAPYIIVGAFVLSAIVAVFGFVYWLNNVGGIGKRQTYQIVFADPVPGLLVGAGVLFN 60 ME RAP++I+GAFVL+AI AVFGFVYWL+N GG+G R TY + F VPGLLVGA VLFN Sbjct: 1 METRAPFVIIGAFVLAAIAAVFGFVYWLHNTGGLGPRATYHVQFEGSVPGLLVGAAVLFN 60 Query: 61 GIRVGEVTALELDPDRPREVHATIAVAERTPVHSDTRVGLDFQGLTGVPVIALEGGDDSQ 120 GIRVGEVT L L PD P V A IAV TPV SDT+VGL+FQGLTGVPV+ALEGG Sbjct: 61 GIRVGEVTELSLAPDNPHRVDAAIAVTSTTPVRSDTKVGLEFQGLTGVPVVALEGGQLLA 120 Query: 121 APPAREPLVAEKGAGRSMTQAARDALRRVDAVLSENAAPLHSTIDNLSTFAEGLARNTPK 180 A L+AE GAG+SMTQAARDALR VDAVL+ENA P+ STI NL F++GLARNT K Sbjct: 121 ASGPVSTLIAEAGAGQSMTQAARDALRHVDAVLAENAGPIKSTIANLQVFSDGLARNTDK 180 Query: 181 LDGIVAGLERMTGGGAPAPRKVVYDLHAVDDFGAQRHANLPEQLVMAEPTAIARLQTQRF 240 LDGIVAGLERMTGGG + +KV YDL A F + L +LV+ EPTA+ +L TQRF Sbjct: 181 LDGIVAGLERMTGGGVSSGQKVTYDLRAAHGFSSPPERTLKSKLVIPEPTAVIKLDTQRF 240 Query: 241 LFSPDEESQRFEGAQWGDSLPVLVQARLLQSFENYDVDHAPLRADSGVEGTPRLLIDLRR 300 LFSP +E F A W DS+P L+QA+LL+SFENYD+ HAPLR+ GV+G +LLID+RR Sbjct: 241 LFSPAKEYPGFAEAIWADSIPKLLQAKLLESFENYDIAHAPLRSMDGVQGDYQLLIDIRR 300 Query: 301 FEIVQGAQPRATISLSAKIVDRNGQVKAAKLLEGSEGINSLTPSEAAAAFDRAFGSLARE 360 F+I +P I LSA+I++++G+V AA+L + ++ ++ + P+ A+AAF+ AFG +A++ Sbjct: 301 FQIATDPEPAVDIGLSARILNKDGKVVAARLFQDTQKLDKIEPAAASAAFNDAFGRIAKD 360 Query: 361 LVMW 364 ++ W Sbjct: 361 MIAW 364 >ref|YP_001207200.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL78983.1| Putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. ORS 278] Length = 366 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/368 (59%), Positives = 273/368 (74%), Gaps = 3/368 (0%) Query: 1 MEIRAPYIIVGAFVLSAIVAVFGFVYWLNNVGGIGKRQTYQIVFADPVPGLLVGAGVLFN 60 ME RAP+ ++G FVL+AIVA+FGFVYWLNN GG+G R TY + F VPGLLVGA VLFN Sbjct: 1 METRAPFAVIGGFVLAAIVAIFGFVYWLNNTGGLGPRTTYHVQFEGSVPGLLVGAAVLFN 60 Query: 61 GIRVGEVTALELDPDRPREVHATIAVAERTPVHSDTRVGLDFQGLTGVPVIALEGGDDSQ 120 GIRVGEVT L L PD PR V+ATI+VA TPV +DT+VGL+FQGLTGVPV+ALE G + Sbjct: 61 GIRVGEVTELGLAPDNPRRVNATISVASSTPVRTDTKVGLEFQGLTGVPVVALEAGSLTA 120 Query: 121 APPAREPLVAEKGAGRSMTQAARDALRRVDAVLSENAAPLHSTIDNLSTFAEGLARNTPK 180 A P L+AE GAG+SMTQAARDALRRVDAVL+ENA PL TI NL TF++GLARNT K Sbjct: 121 AAPGST-LMAEPGAGQSMTQAARDALRRVDAVLAENAGPLKDTIANLKTFSDGLARNTGK 179 Query: 181 LDGIVAGLERMTGGGAPAPRKVVYDLHAVDDFGAQRHANLPEQLVMAEPTAIARLQTQRF 240 LDGIV+GLE+MTGGGAPA +KV YDL A D G + + QL + EPTA+A LQTQR Sbjct: 180 LDGIVSGLEKMTGGGAPA-QKVTYDLTAPRDLGPV-NKTIKGQLAIPEPTAVAMLQTQRM 237 Query: 241 LFSPDEESQRFEGAQWGDSLPVLVQARLLQSFENYDVDHAPLRADSGVEGTPRLLIDLRR 300 LFSP ++ F W DS+P L+QARL+ +FENYDV HAPLRA + +LLID+RR Sbjct: 238 LFSPAKDYPGFGDVLWADSIPKLLQARLIDTFENYDVAHAPLRASDLGQPDVQLLIDVRR 297 Query: 301 FEIVQGAQPRATISLSAKIVDRNGQVKAAKLLEGSEGINSLTPSEAAAAFDRAFGSLARE 360 F I A A I LSA++VD++G++ A++L + S+ + + P++A AAFD+AFG LA+ Sbjct: 298 FRINVDATAVADIGLSARLVDKSGKIIASRLFDESQPVGQINPADAVAAFDQAFGRLAKS 357 Query: 361 LVMWVAST 368 ++ W + Sbjct: 358 ILAWTVQS 365 >ref|YP_001241606.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37700.1| Putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. BTAi1] Length = 367 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 214/364 (58%), Positives = 266/364 (73%), Gaps = 2/364 (0%) Query: 1 MEIRAPYIIVGAFVLSAIVAVFGFVYWLNNVGGIGKRQTYQIVFADPVPGLLVGAGVLFN 60 ME RAP+ ++G FVL+AIVA+FGFVYWLNN GG+G R +Y + F VPGLLVGA VLFN Sbjct: 1 METRAPFAVIGGFVLAAIVAIFGFVYWLNNTGGLGPRTSYHVQFEGSVPGLLVGAAVLFN 60 Query: 61 GIRVGEVTALELDPDRPREVHATIAVAERTPVHSDTRVGLDFQGLTGVPVIALEGGDDSQ 120 GIRVGEVT L L PD PR V+ATI+VA PV SDT+VGL+FQGLTGVPVIALEGG + Sbjct: 61 GIRVGEVTDLVLAPDNPRRVNATISVATSVPVRSDTKVGLEFQGLTGVPVIALEGGSSTA 120 Query: 121 APPAREPLVAEKGAGRSMTQAARDALRRVDAVLSENAAPLHSTIDNLSTFAEGLARNTPK 180 L+AE GAG+SMTQAARDALRRVDAVL+ENA PL TI NL TF++GLARNT K Sbjct: 121 TSGPVSILIAEPGAGQSMTQAARDALRRVDAVLAENAGPLKDTIANLRTFSDGLARNTGK 180 Query: 181 LDGIVAGLERMTGGGAPAPRKVVYDLHAVDDFGAQRHANLPEQLVMAEPTAIARLQTQRF 240 LD IV+GLE+MTGGGAPA +KV YDL A DFG + QL + EPTA+A LQTQR Sbjct: 181 LDSIVSGLEKMTGGGAPA-QKVTYDLRAPRDFGPIAK-TIKGQLAIPEPTAVAMLQTQRI 238 Query: 241 LFSPDEESQRFEGAQWGDSLPVLVQARLLQSFENYDVDHAPLRADSGVEGTPRLLIDLRR 300 LFSP ++ F A W DS+P L+QARL+ +FENYD+ HAPLR + +LL+D+RR Sbjct: 239 LFSPAKDYPGFGDALWADSIPKLLQARLIDAFENYDIAHAPLRTADLGQPDVQLLVDVRR 298 Query: 301 FEIVQGAQPRATISLSAKIVDRNGQVKAAKLLEGSEGINSLTPSEAAAAFDRAFGSLARE 360 F I I LSA++VD++G++ A++L + S+ ++ L P+ A AFD+AFG +A+ Sbjct: 299 FRINTDPTAVVEIGLSARLVDKSGKIIASRLFDESQPVDRLDPAIAVTAFDQAFGRVAKS 358 Query: 361 LVMW 364 L+ W Sbjct: 359 LLTW 362 >ref|YP_002289806.1| ABC transporter [Oligotropha carboxidovorans OM5] ref|YP_004632202.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] gb|ACI93941.1| putative ABC transporter [Oligotropha carboxidovorans OM5] gb|AEI02385.1| putative ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM4] gb|AEI05961.1| putative ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] Length = 371 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/368 (57%), Positives = 260/368 (70%), Gaps = 3/368 (0%) Query: 1 MEIRAPYIIVGAFVLSAIVAVFGFVYWLNNVGGIGKRQTYQIVFADPVPGLLVGAGVLFN 60 ME RAPYIIVG FVLS AVFGFVYWLNN GG+G R YQ+ F +PVPGLLVGAGVLFN Sbjct: 1 METRAPYIIVGLFVLSIAAAVFGFVYWLNNAGGLGARSIYQVQFDEPVPGLLVGAGVLFN 60 Query: 61 GIRVGEVTALELDPDRPREVHATIAVAERTPVHSDTRVGLDFQGLTGVPVIALEGGDDSQ 120 GIRVGEVT L LDP PR V+A+++V TPV +DT+VGL+FQGLTGVPVIALEG D+ Sbjct: 61 GIRVGEVTRLALDPQSPRRVNASVSVLTDTPVRADTKVGLEFQGLTGVPVIALEGNKDTL 120 Query: 121 APPAREPLVAEKGAGRSMTQAARDALRRVDAVLSENAAPLHSTIDNLSTFAEGLARNTPK 180 A LVA GAG+SMTQAAR+ALR++D+VLS+N+ PLH TI NLSTFAEGLARNT + Sbjct: 121 ATTPIGVLVASPGAGQSMTQAAREALRKIDSVLSDNSQPLHDTIANLSTFAEGLARNTGR 180 Query: 181 LDGIVAGLERMTGGGAPAPRKVVYDLHAVDDFGAQRHANLPEQLVMAEPTAIARLQTQRF 240 LDGI+AGLERMTGGG P +K VYDL AV + A R L QL + EPT I L TQR Sbjct: 181 LDGILAGLERMTGGGEPQAQKHVYDLSAVQTYAATRTP-LTLQLAIPEPTVILALDTQRL 239 Query: 241 LFSP--DEESQRFEGAQWGDSLPVLVQARLLQSFENYDVDHAPLRADSGVEGTPRLLIDL 298 + +P D AQW DS+P LVQARLL+SFENY + AP+R GV+ LL ++ Sbjct: 240 IVTPEGDALDASIAQAQWADSIPKLVQARLLESFENYSEEKAPVRPTDGVQTDATLLSEI 299 Query: 299 RRFEIVQGAQPRATISLSAKIVDRNGQVKAAKLLEGSEGINSLTPSEAAAAFDRAFGSLA 358 RRF + P A ISLS K+V ++GQ+ A+++ ++ + L A +A DRAF A Sbjct: 300 RRFGVDTSGSPTAEISLSVKLVAKSGQIVASRIFRSNQPVAHLDAKTAVSAIDRAFTDTA 359 Query: 359 RELVMWVA 366 +++V W A Sbjct: 360 KQIVTWAA 367 >ref|YP_533886.1| hypothetical protein RPC_4041 [Rhodopseudomonas palustris BisB18] gb|ABD89567.1| Mammalian cell entry related [Rhodopseudomonas palustris BisB18] Length = 367 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/368 (58%), Positives = 261/368 (70%), Gaps = 4/368 (1%) Query: 1 MEIRAPYIIVGAFVLSAIVAVFGFVYWLNNVGGIGKRQTYQIVFADPVPGLLVGAGVLFN 60 ME RAP+IIVGAFVL+AI AVFGFV WL+N G+G R TY + F VPGLLVGA VLFN Sbjct: 1 METRAPFIIVGAFVLAAIAAVFGFVLWLHNTSGLGARTTYHVQFNGSVPGLLVGAAVLFN 60 Query: 61 GIRVGEVTALELDPDRPREVHATIAVAERTPVHSDTRVGLDFQGLTGVPVIALEGGDDSQ 120 GIRVGEVT L L PD PR+V+ATI V TPV +DT+VGLDFQGLTGVPVIALEGG Sbjct: 61 GIRVGEVTELGLAPDNPRQVNATIGVDATTPVRADTKVGLDFQGLTGVPVIALEGG-TQL 119 Query: 121 APPAREP-LVAEKGAGRSMTQAARDALRRVDAVLSENAAPLHSTIDNLSTFAEGLARNTP 179 AP P LVA+ GAG+SMTQAAR+ALR+VDAVL+ENA PL +TI +L FAEGLARNT Sbjct: 120 APSGTVPTLVADPGAGQSMTQAAREALRKVDAVLTENAEPLKATIGDLKIFAEGLARNTG 179 Query: 180 KLDGIVAGLERMTGGGAPAPRKVVYDLHAVDDFGAQRHANLPEQLVMAEPTAIARLQTQR 239 KLDGI+AG+ERMTG P KVVYDL A D + + QL +AEPT + TQR Sbjct: 180 KLDGIMAGVERMTGADKPVVTKVVYDLRAATDLPPGKP--IKGQLAIAEPTYVVMFDTQR 237 Query: 240 FLFSPDEESQRFEGAQWGDSLPVLVQARLLQSFENYDVDHAPLRADSGVEGTPRLLIDLR 299 L +P + F G QW DS+P LVQA+L+QSFENYD+ HAPLRA ++ +LLID+R Sbjct: 238 LLLAPGLDYPAFAGFQWSDSIPKLVQAKLIQSFENYDIAHAPLRASDALQADHQLLIDIR 297 Query: 300 RFEIVQGAQPRATISLSAKIVDRNGQVKAAKLLEGSEGINSLTPSEAAAAFDRAFGSLAR 359 F++ A ++ SAKIV ++G+ AAKL S ++ P A AAF+ AFGS+A+ Sbjct: 298 SFQVGGSPDLAAEVAFSAKIVSKDGKQVAAKLFRASAPLDKPEPLAALAAFNEAFGSVAK 357 Query: 360 ELVMWVAS 367 EL+ W AS Sbjct: 358 ELIQWTAS 365