BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0172.0005.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770412.1| hypothetical protein bll3772 [Bradyrhizobium ja... 146 4e-33 ref|NP_771957.1| hypothetical protein blr5317 [Bradyrhizobium ja... 131 2e-28 ref|NP_770835.1| transcriptional regulator [Bradyrhizobium japon... 97 3e-18 ref|YP_004311531.1| AraC family transcriptional regulator [Marin... 75 1e-11 dbj|BAI91579.1| AraC family transcriptional regulator [Arthrospi... 71 3e-10 >ref|NP_770412.1| hypothetical protein bll3772 [Bradyrhizobium japonicum USDA 110] dbj|BAC49037.1| bll3772 [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 102/318 (32%), Positives = 157/318 (49%), Gaps = 21/318 (6%) Query: 6 LSASPALDLQAYADVDHFRESERYVQASSIPLTAAPPSILRASLSLPSATLSLVRTFPRI 65 L S L ++ Y+D + FR SE S PL S+ RA L L L RTF R Sbjct: 46 LKPSRVLGIERYSDFESFRPSEVLGGGISTPLEPREFSLHRAILPLQDGLFVLQRTFARR 105 Query: 66 INGYELSDRLV-FVVPMDRVASARLNGQAVRHSII-VLKGSANCTVFEPEPRLVAILSIP 123 + +D V V+P+ +A NG+ + +S+I +++G E +L Sbjct: 106 LQANIGTDHGVGLVIPLACHFTA--NGREIDNSMIGIVRGKVPTEAVEHHANTYLMLRFN 163 Query: 124 PDHLALKWAELSAGYLLLGLPGDSLAFIQTLIQSTLRFAAHQSKPIDVHQL-LAIQGTLF 182 D WA+ G L D++A ++ I A+ + P + IQ L Sbjct: 164 SDMRHRGWADYETGLEFTRLDDDTMAGLRAAILDMFCLASRCNDPRQFEAIDRPIQERLL 223 Query: 183 SALD--------EEFHRGAFEGGKANIAERYKRIIDHIDDAIMSTPASNNTCDELANELG 234 LD ++ RG+F+ ++++++ +D+A + +LAN LG Sbjct: 224 EGLDAALAPVDAQDRRRGSFD--------KHRKLVARLDEAATLSGGIPLYSGDLANALG 275 Query: 235 ISVRTLHTAAQSICGAGIHQYRRLRQLWLVRQHLRMGYPGLTVKATALAHGFWHMGEFSR 294 +SVRTL +A Q++ G +H + RL++LW R L G G+TVKA ALA+GFWHMGEFS+ Sbjct: 276 VSVRTLQSATQAVHGVSLHHHLRLKRLWSTRTQLLTGGDGMTVKAAALANGFWHMGEFSK 335 Query: 295 MYRAAFGEVPSRTLIEAQ 312 +YR FGE+PS TL +A+ Sbjct: 336 LYRTTFGEMPSGTLAQAR 353 >ref|NP_771957.1| hypothetical protein blr5317 [Bradyrhizobium japonicum USDA 110] dbj|BAC50582.1| blr5317 [Bradyrhizobium japonicum USDA 110] Length = 320 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 152/321 (47%), Gaps = 6/321 (1%) Query: 2 LFNALSASPALDLQAYADVDHFRESERYVQASSIPLTAAPPSILRASLSLPSATLSLVRT 61 +F+A + S AL L +ADVD FR E A SIPL + RA +SLP+ + ++R+ Sbjct: 1 MFDAFAPSSALQLIDFADVDAFRPIESMEDARSIPLDVPNFAAARAVVSLPACRIIVMRS 60 Query: 62 FPRIIN-GYELSDRLVFVVPMDRVASARLNGQAVRHSIIVLKGSANCTVFEPEPRLVAIL 120 F RI++ Y + +V + D + + L+G+ C EP A++ Sbjct: 61 FARILDTAYRMPGGMVILSMTDDLLVNSKGMDLDARFFVALRGNDECHFVEPRTNYHAMI 120 Query: 121 SIPPDHLALKWAELSAGYLLLGLPGDSLAFIQTLIQSTLRFAAHQSKPIDVHQLLA-IQG 179 P W + + +L + L+ LR A+ Q + + A +Q Sbjct: 121 IFSPGLKDRGWFDHADDLRAYVANRPALLHTRQLLLDILRTASVQPFLFETTEAAAHLQE 180 Query: 180 TLFSALDEEFHRGAF-EGGKANIAERYKRIIDHIDDAIMSTPASNNTCDELANELGISVR 238 L ALD+ F A E + R +++ ID+ + + P + +LA E G+S+R Sbjct: 181 GLLLALDDLFRIDARPERSTSVQGGRSAKLVQWIDEYVAAYPTAPIYTADLAGEFGVSIR 240 Query: 239 TLHTAAQSICGAGIHQYRRLRQLWLVRQHLRMGYPGLTVKATALAHGFWHMGEFSRMYRA 298 TL A + G +HQY RL++LW R L G G TV A A GF HMGEF+ YRA Sbjct: 241 TLGGAVSKVRGMSLHQYIRLKRLWATRARLLKG-GGATVATCARAQGFHHMGEFAAAYRA 299 Query: 299 AFGEVPSRTLIEAQGKPASIP 319 F E PS TL A+G+ +P Sbjct: 300 TFHEAPSDTL--ARGRQIGLP 318 >ref|NP_770835.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49460.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 315 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 147/302 (48%), Gaps = 19/302 (6%) Query: 17 YADVDHFRESERYVQASSIPLT--AAPPSILRASLSLPSATLSLVRTFPRIINGYELSDR 74 ++DVD FR + R + P A I+ L LP +++ R FPR+++ ++D Sbjct: 17 FSDVDEFRNAIRGLNFEFTPFVRRIAAEQII---LQLPGCDVNVTRAFPRVVDAELIADC 73 Query: 75 LVFVVPMDRV-ASARLNG-QAVRHSIIVLKGSANCTVFEPEPRLVAILSIPPDHLALKWA 132 MD + R NG Q R +++ G A E R +A + P+ W Sbjct: 74 TAVGFAMDDLDVPIRFNGAQRDRAVVVIGSGGAAYNTIEEVQRQIASVVFRPEVKNRGWP 133 Query: 133 ELSAGYLLLGLPGDSLAFIQTLIQSTLRFAAHQSKPIDVHQ----LLAIQGTLFSALDEE 188 E + + + +L ++ +++ + A S+PID + A++ +LF A+D Sbjct: 134 ETRSNFKIFETSTLALNGVRNVVREVV---AAASEPIDPTEAPLKAAAMKESLFGAVDAV 190 Query: 189 FHR--GAFEGGKANIAERYKRIIDHIDDAIMSTPASNNTCDELANELGISVRTLHTAAQS 246 F A + N ER +I I + A +E+A ELG+SVRTLH + Sbjct: 191 FANLVSARWTVRPN-DERQFKIFQDIRALLSGDLAQPIYSEEIARELGLSVRTLHDVVRR 249 Query: 247 ICGAGIHQYRRLRQLWLVRQHLRMGYPGLTVKATALAHGFWHMGEFSRMYRAAFGEVPSR 306 G +H+Y RLR+LWLVRQ L G +VKA ALA GFWH+ +FSR YR FGE PS Sbjct: 250 YRGMSLHRYLRLRRLWLVRQRLLAGAD--SVKAVALAFGFWHLSDFSRSYRDRFGEAPSE 307 Query: 307 TL 308 TL Sbjct: 308 TL 309 >ref|YP_004311531.1| AraC family transcriptional regulator [Marinomonas mediterranea MMB-1] gb|ADZ89695.1| transcriptional regulator, AraC family [Marinomonas mediterranea MMB-1] Length = 321 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 17/249 (6%) Query: 73 DRLVFVVPMDRVASARLNGQAVRHSIIVLK-GSANCTVFEPEP--------RLVAILSIP 123 D + +P++ ++R+NG ++ + I+ + G + PE +L +++ Sbjct: 76 DSVWLGIPVENQEASRINGLSIHPNTIMCRPGDYEFQLTTPEDYNLYGMVVQLESLMKTA 135 Query: 124 PDH-LALKWAELSAGYLLLGLPGDSLAFIQTLIQSTLRFAAHQSKPIDVHQLLAIQGTLF 182 H + L W EL + L LP +L ++ ++Q L + H + +L + L Sbjct: 136 AIHGVELNWKEL-MQHGRLALPEQTLRDVRVVLQRMLDMSTHTKANRMSYDVLMM--ALL 192 Query: 183 SALDEEFHRGAFEGGKANIAERYKRIIDHIDDAIMSTPASNNTCDELANELGISVRTLHT 242 L EE + A R K ++D I + P T +L +S RTL Sbjct: 193 EVLKEETPQPA----STQTFHRRKEVVDTARRFIEAHPDVPLTVTDLCEVANVSRRTLQY 248 Query: 243 AAQSICGAGIHQYRRLRQLWLVRQHLRMGYPGLTVKATALAHGFWHMGEFSRMYRAAFGE 302 + +SI G QY R+ +L R++L TV A GFWH+ +F++ YR FGE Sbjct: 249 SFESIIGISPIQYLRISRLNGARRNLIKSDIDTTVSDVAATWGFWHLSQFAKDYRNLFGE 308 Query: 303 VPSRTLIEA 311 PS+TL +A Sbjct: 309 KPSQTLDQA 317 >dbj|BAI91579.1| AraC family transcriptional regulator [Arthrospira platensis NIES-39] Length = 362 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 208 IIDHIDDAIMSTPASNNTCDELANELGISVRTLHTAAQSICGAGIHQYRRLRQLWLVRQH 267 I + + I + N T +EL +LGIS+R+L A + I G G+ QY R R+L VR+ Sbjct: 246 IFETVQAIIDNNLRQNLTNEELCQQLGISLRSLQYAFKEITGVGVQQYIRARKLNAVREE 305 Query: 268 L--RMGYPGLTVKATALAHGFWHMGEFSRMYRAAFGEVPS 305 L R P T+ A A A+GF HMG FS + FGE PS Sbjct: 306 LCGRSANPT-TIYAIATAYGFSHMGRFSEQFHRYFGEYPS 344