BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0007.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_532449.1| two component sigma54 specific Fis family trans... 694 0.0 ref|YP_486493.1| two component, sigma54 specific, Fis family tra... 694 0.0 ref|YP_001240044.1| two component, sigma54 specific, Fis family ... 693 0.0 ref|YP_569722.1| two component, sigma54 specific, transcriptiona... 692 0.0 ref|NP_947937.1| two component sigma54 specific transcriptional ... 691 0.0 >ref|YP_532449.1| two component sigma54 specific Fis family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD88130.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB18] Length = 456 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/373 (91%), Positives = 360/373 (96%) Query: 1 MASDILIVDDEADIRDLVAGILDDEGFSTRTARDSDSALAEIANRRPNLVFLDIWLQGSK 60 MA+DILIVDDEADIRDLVAGIL+DEGF+TRTARDSDSALAE++NRRPNLVFLDIWLQGSK Sbjct: 1 MANDILIVDDEADIRDLVAGILEDEGFTTRTARDSDSALAEVSNRRPNLVFLDIWLQGSK 60 Query: 61 LDGLQLLEQIKKDNADLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 LDGLQLLEQIK+++AD+PVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL Sbjct: 61 LDGLQLLEQIKREHADVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 Query: 121 ETSRLRREVKELKQLAPAASVLTGRSACMNQLRQTIDRAAKANSRILIVGPSGAGKELAA 180 ETSRL+REVKELKQ AP AS L G SACMNQLRQTI+RAAKANSRILIVGPSGAGKELAA Sbjct: 121 ETSRLKREVKELKQQAPIASTLMGHSACMNQLRQTIERAAKANSRILIVGPSGAGKELAA 180 Query: 181 RTLHHASGRAEGPFVVINAAAITPERMEIELFGIEGSNGEQQRKAGALEEAHGGTLFIDE 240 RTLH+ASGR+EGPFVVINAAAITPERME+ELFG+E SNGEQ RKAGALEEAHGGTLFIDE Sbjct: 181 RTLHNASGRSEGPFVVINAAAITPERMEVELFGVEQSNGEQPRKAGALEEAHGGTLFIDE 240 Query: 241 IADMPRETQNKILRVLVDQTFQRQGGTSKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 I DMPRETQNKILRVLVDQTFQR GGT KV+VDVRI+SSTARNLEEEIA GRFREDLYHR Sbjct: 241 IGDMPRETQNKILRVLVDQTFQRAGGTIKVNVDVRIVSSTARNLEEEIAEGRFREDLYHR 300 Query: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 LSVVPIRVPPLSERREDIPELI+YFMDQIS ATGLPKRQIG DAMAVLQSHVWPGNVRQL Sbjct: 301 LSVVPIRVPPLSERREDIPELIEYFMDQISLATGLPKRQIGADAMAVLQSHVWPGNVRQL 360 Query: 361 RNNVERVMILAGG 373 RNNVERVMILAGG Sbjct: 361 RNNVERVMILAGG 373 >ref|YP_486493.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD07582.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris HaA2] Length = 455 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/373 (91%), Positives = 364/373 (97%), Gaps = 1/373 (0%) Query: 1 MASDILIVDDEADIRDLVAGILDDEGFSTRTARDSDSALAEIANRRPNLVFLDIWLQGSK 60 MA+DILIVDDEADIRDLVAGIL+DEGF++RTARDSDSALAEIANRRPNL+FLDIWLQGSK Sbjct: 1 MANDILIVDDEADIRDLVAGILEDEGFTSRTARDSDSALAEIANRRPNLIFLDIWLQGSK 60 Query: 61 LDGLQLLEQIKKDNADLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 LDGLQLLEQIKK++A++PVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRL+LVATRAL Sbjct: 61 LDGLQLLEQIKKEHAEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLLLVATRAL 120 Query: 121 ETSRLRREVKELKQLAPAASVLTGRSACMNQLRQTIDRAAKANSRILIVGPSGAGKELAA 180 ETSRL+REV+ELKQ AP+AS L GRSACMNQLRQTI+RAAKANSRILIVGPSGAGKELAA Sbjct: 121 ETSRLKREVRELKQQAPSASTLMGRSACMNQLRQTIERAAKANSRILIVGPSGAGKELAA 180 Query: 181 RTLHHASGRAEGPFVVINAAAITPERMEIELFGIEGSNGEQQRKAGALEEAHGGTLFIDE 240 RTLH+ASGRA+GPFVVINAAAITPERME+ELFGIE NGE RKAGALEEAHGGTLFIDE Sbjct: 181 RTLHNASGRADGPFVVINAAAITPERMEVELFGIE-PNGEHARKAGALEEAHGGTLFIDE 239 Query: 241 IADMPRETQNKILRVLVDQTFQRQGGTSKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 IADMPRETQNKILRVLV+QTFQR GGT+KV+VDVRIISSTARNLEEEIA GRFREDLYHR Sbjct: 240 IADMPRETQNKILRVLVEQTFQRSGGTAKVNVDVRIISSTARNLEEEIAEGRFREDLYHR 299 Query: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 LSVVPIRVPPLSERREDIPELI+YFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL Sbjct: 300 LSVVPIRVPPLSERREDIPELIEYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 359 Query: 361 RNNVERVMILAGG 373 RNNVERVMILAGG Sbjct: 360 RNNVERVMILAGG 372 >ref|YP_001240044.1| two component, sigma54 specific, Fis family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36138.1| two component, sigma54 specific, transcriptional regulator, Fis family [Bradyrhizobium sp. BTAi1] Length = 456 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/373 (92%), Positives = 355/373 (95%) Query: 1 MASDILIVDDEADIRDLVAGILDDEGFSTRTARDSDSALAEIANRRPNLVFLDIWLQGSK 60 MASDILIVDDEADIR+LVAGILDDEGF+TRTARDSDSALAEIA RRPNLVFLDIWLQGSK Sbjct: 1 MASDILIVDDEADIRELVAGILDDEGFTTRTARDSDSALAEIAGRRPNLVFLDIWLQGSK 60 Query: 61 LDGLQLLEQIKKDNADLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 LDGLQLLEQIKKD+ DLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL Sbjct: 61 LDGLQLLEQIKKDHPDLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 Query: 121 ETSRLRREVKELKQLAPAASVLTGRSACMNQLRQTIDRAAKANSRILIVGPSGAGKELAA 180 ETSRL+REV+ELKQLAP AS +TGRS MNQLRQTI+RAAKANSRILIVGP G+GKELAA Sbjct: 121 ETSRLKREVRELKQLAPTASTMTGRSPSMNQLRQTIERAAKANSRILIVGPPGSGKELAA 180 Query: 181 RTLHHASGRAEGPFVVINAAAITPERMEIELFGIEGSNGEQQRKAGALEEAHGGTLFIDE 240 RTLH S RAEGPFVVINAAAITPERME ELFG+E SNGEQ RK GALEEAHGGTLF+DE Sbjct: 181 RTLHAQSPRAEGPFVVINAAAITPERMEEELFGVEQSNGEQSRKTGALEEAHGGTLFVDE 240 Query: 241 IADMPRETQNKILRVLVDQTFQRQGGTSKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 IADMPRETQNKILRVLVDQTFQR GGT+KVHVDVRIISSTARNLEEEIAAGRFREDLYHR Sbjct: 241 IADMPRETQNKILRVLVDQTFQRAGGTTKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 Query: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 LSVVPIRVPPLSERREDIPELIDYFMDQIS TGLPKRQIGQDAMAVLQSHVWPGNVRQL Sbjct: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISVTTGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 Query: 361 RNNVERVMILAGG 373 RNNVERVMILA G Sbjct: 361 RNNVERVMILAAG 373 >ref|YP_569722.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB5] gb|ABE39821.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB5] Length = 455 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/373 (91%), Positives = 363/373 (97%), Gaps = 1/373 (0%) Query: 1 MASDILIVDDEADIRDLVAGILDDEGFSTRTARDSDSALAEIANRRPNLVFLDIWLQGSK 60 MA+DILIVDDEADIRDLVAGIL+DEGF+TRTARDSDSALAEI+NRRPNL+FLDIWLQGSK Sbjct: 1 MANDILIVDDEADIRDLVAGILEDEGFTTRTARDSDSALAEISNRRPNLIFLDIWLQGSK 60 Query: 61 LDGLQLLEQIKKDNADLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 LDGLQLLEQIKKD+A++PVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL Sbjct: 61 LDGLQLLEQIKKDHAEVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 Query: 121 ETSRLRREVKELKQLAPAASVLTGRSACMNQLRQTIDRAAKANSRILIVGPSGAGKELAA 180 ETSRL+REV+ELKQ AP+AS L GRSACMNQLRQTI+RAAKANSRILIVGPSGAGKELAA Sbjct: 121 ETSRLKREVRELKQQAPSASTLMGRSACMNQLRQTIERAAKANSRILIVGPSGAGKELAA 180 Query: 181 RTLHHASGRAEGPFVVINAAAITPERMEIELFGIEGSNGEQQRKAGALEEAHGGTLFIDE 240 RTLH+ASGR +GPFVVINAAAITPERME+ELFG+E NGE RKAGALEEAHGGTLFIDE Sbjct: 181 RTLHNASGRTDGPFVVINAAAITPERMEVELFGVE-PNGEHPRKAGALEEAHGGTLFIDE 239 Query: 241 IADMPRETQNKILRVLVDQTFQRQGGTSKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 IADMPRETQNKILRVLV+QTFQR GGT+KV+VDVRI+SSTARNLEEEIA GRFREDLYHR Sbjct: 240 IADMPRETQNKILRVLVEQTFQRSGGTAKVNVDVRIVSSTARNLEEEIAEGRFREDLYHR 299 Query: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 LSVVPIRVPPLSERREDIPELI+YFM+QISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL Sbjct: 300 LSVVPIRVPPLSERREDIPELIEYFMEQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 359 Query: 361 RNNVERVMILAGG 373 RNNVERVMILAGG Sbjct: 360 RNNVERVMILAGG 372 >ref|NP_947937.1| two component sigma54 specific transcriptional regulator Fis family [Rhodopseudomonas palustris CGA009] ref|YP_001991848.1| Fis family transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE28036.1| nitrogen assimilation regulatory protein ntrX-Response regulator [Rhodopseudomonas palustris CGA009] gb|ACF01373.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris TIE-1] Length = 455 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/373 (91%), Positives = 364/373 (97%), Gaps = 1/373 (0%) Query: 1 MASDILIVDDEADIRDLVAGILDDEGFSTRTARDSDSALAEIANRRPNLVFLDIWLQGSK 60 MA+DILIVDDEADIRDLVAGIL+DEGFSTRTARDSDSALAEIANRRPNL+FLDIWLQGSK Sbjct: 1 MANDILIVDDEADIRDLVAGILEDEGFSTRTARDSDSALAEIANRRPNLIFLDIWLQGSK 60 Query: 61 LDGLQLLEQIKKDNADLPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 LDGLQLLEQIKKD+ D+PVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL Sbjct: 61 LDGLQLLEQIKKDHTDVPVVMISGHGNIETAVAAIKRGAYDFIEKPFKSDRLILVATRAL 120 Query: 121 ETSRLRREVKELKQLAPAASVLTGRSACMNQLRQTIDRAAKANSRILIVGPSGAGKELAA 180 ETSRL+REV+ELKQLAP+AS L GRSAC+NQLRQTI+RAAKANSRILIVGPSGAGKELAA Sbjct: 121 ETSRLKREVRELKQLAPSASTLVGRSACINQLRQTIERAAKANSRILIVGPSGAGKELAA 180 Query: 181 RTLHHASGRAEGPFVVINAAAITPERMEIELFGIEGSNGEQQRKAGALEEAHGGTLFIDE 240 RTLH++S RA+GPFVVINAAAITPE+MEIELFG+E +NGE RKAGALEEAHGGTLFIDE Sbjct: 181 RTLHNSSSRADGPFVVINAAAITPEKMEIELFGVE-ANGEHSRKAGALEEAHGGTLFIDE 239 Query: 241 IADMPRETQNKILRVLVDQTFQRQGGTSKVHVDVRIISSTARNLEEEIAAGRFREDLYHR 300 IADMPRETQNKILRVLV+QTFQR GGT+KV+VDVRIISSTARNLEEEI AGRFREDLYHR Sbjct: 240 IADMPRETQNKILRVLVEQTFQRCGGTTKVNVDVRIISSTARNLEEEITAGRFREDLYHR 299 Query: 301 LSVVPIRVPPLSERREDIPELIDYFMDQISAATGLPKRQIGQDAMAVLQSHVWPGNVRQL 360 LSVVPIRVPPLSERR+DIPELI+YFM+QISAATGLP+RQIGQDAMAVLQSHVWPGNVRQL Sbjct: 300 LSVVPIRVPPLSERRDDIPELIEYFMEQISAATGLPRRQIGQDAMAVLQSHVWPGNVRQL 359 Query: 361 RNNVERVMILAGG 373 RNNVER+MILAGG Sbjct: 360 RNNVERLMILAGG 372