BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0171.0004.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205856.1| nitrogen regulation protein [Bradyrhizobium ... 442 e-122 ref|YP_001240041.1| signal transduction histidine kinase, nitrog... 436 e-120 ref|YP_486496.1| signal transduction histidine kinase, nitrogen ... 436 e-120 ref|YP_569719.1| signal transduction histidine kinase, nitrogen ... 430 e-119 ref|NP_947934.1| signal transduction histidine kinase nitrogen s... 426 e-117 >ref|YP_001205856.1| nitrogen regulation protein [Bradyrhizobium sp. ORS 278] emb|CAL77631.1| Nitrogen regulation protein [Bradyrhizobium sp. ORS 278] Length = 391 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/235 (91%), Positives = 225/235 (95%) Query: 25 PGAGIRGAAQLLEQQASSEDRLLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV 84 P +GIRGAAQLLEQQASSEDR+LTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV Sbjct: 154 PLSGIRGAAQLLEQQASSEDRMLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV 213 Query: 85 LDHVKRLAQSGFARNVRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVADLGTDAEI 144 LDHVKRLAQSGFARN+RFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAV DLG+DAEI Sbjct: 214 LDHVKRLAQSGFARNIRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVVDLGSDAEI 273 Query: 145 QLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLGL 204 QLTTAFRPGVRLSVPGKKSRVSLPLEFCV+DNG GVPEDL+PNLFDPFVTTK TGSGLGL Sbjct: 274 QLTTAFRPGVRLSVPGKKSRVSLPLEFCVRDNGPGVPEDLMPNLFDPFVTTKPTGSGLGL 333 Query: 205 ALVAKIVGDHGGIIECESQPRKTTFRVLMPMYSAAKQLDQSNRDDVPGTSSPASQ 259 ALVAKI+GDHGGIIECESQPRKTTFRVLMPMYSA+K DQ +RDDV GT S ASQ Sbjct: 334 ALVAKIIGDHGGIIECESQPRKTTFRVLMPMYSASKYPDQGHRDDVSGTPSHASQ 388 >ref|YP_001240041.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bradyrhizobium sp. BTAi1] gb|ABQ36135.1| signal transduction histidine kinase, nitrogen specific, NtrB [Bradyrhizobium sp. BTAi1] Length = 395 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/239 (90%), Positives = 223/239 (93%), Gaps = 4/239 (1%) Query: 25 PGAGIRGAAQLLEQQASSEDRLLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV 84 P +GIRGAAQLLEQQASSEDR+LTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV Sbjct: 154 PLSGIRGAAQLLEQQASSEDRMLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHSV 213 Query: 85 LDHVKRLAQSGFARNVRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVADLGTDAEI 144 LDHVKRLAQSGFARN+RFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAV DLG DAEI Sbjct: 214 LDHVKRLAQSGFARNIRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVVDLGADAEI 273 Query: 145 QLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLGL 204 QLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNG GVPEDL+PNLFDPFVTTK TGSGLGL Sbjct: 274 QLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGPGVPEDLMPNLFDPFVTTKPTGSGLGL 333 Query: 205 ALVAKIVGDHGGIIECESQPRKTTFRVLMPMYSAAKQLDQSNR----DDVPGTSSPASQ 259 ALVAKI+GDHGGIIECESQPRKTTFRVLMPMYSA KQ DQS + DDV GT ASQ Sbjct: 334 ALVAKIIGDHGGIIECESQPRKTTFRVLMPMYSATKQPDQSPKNSHGDDVSGTPLHASQ 392 >ref|YP_486496.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris HaA2] gb|ABD07585.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris HaA2] Length = 389 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/239 (88%), Positives = 226/239 (94%), Gaps = 2/239 (0%) Query: 24 GPGAGIRGAAQLLEQQASSEDRLLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 83 P +GIRGAAQLLEQQASSEDR+LTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS Sbjct: 153 NPLSGIRGAAQLLEQQASSEDRMLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 212 Query: 84 VLDHVKRLAQSGFARNVRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVADLGTDAE 143 VLDHVKRLAQSGFARN++F+EDYDPSLPPVLANQDQLIQVFLNLVKNAAEAV DLG+DAE Sbjct: 213 VLDHVKRLAQSGFARNIKFVEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVIDLGSDAE 272 Query: 144 IQLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLG 203 IQLTTAFRPGVRLSVPGKK+RVSLPLEFCVKDNG GVPEDL+PNLFDPFVTTK +GSGLG Sbjct: 273 IQLTTAFRPGVRLSVPGKKTRVSLPLEFCVKDNGPGVPEDLMPNLFDPFVTTKASGSGLG 332 Query: 204 LALVAKIVGDHGGIIECESQPRKTTFRVLMPMYSAAKQLDQSNRDDVPGTSSPASQDAR 262 LALVAKIVGDHGGIIECESQPRKTTFRVL+PMY+ AK +QSN +DVP +S ASQ AR Sbjct: 333 LALVAKIVGDHGGIIECESQPRKTTFRVLLPMYNTAKNYNQSNGEDVPASS--ASQTAR 389 >ref|YP_569719.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris BisB5] gb|ABE39818.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris BisB5] Length = 390 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/239 (88%), Positives = 224/239 (93%), Gaps = 1/239 (0%) Query: 24 GPGAGIRGAAQLLEQQASSEDRLLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 83 P +GIRGAAQLLEQQASSEDR+LTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS Sbjct: 153 NPLSGIRGAAQLLEQQASSEDRMLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 212 Query: 84 VLDHVKRLAQSGFARNVRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVADLGTDAE 143 V DHVKRLAQSGFARN++F+EDYDPSLPPVLANQDQLIQVFLNLVKNAAEAV DLG+DAE Sbjct: 213 VFDHVKRLAQSGFARNIKFVEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVVDLGSDAE 272 Query: 144 IQLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLG 203 I LTTAFRPGVRLSVPGKK+RVSLPLEFCVKDNG GVPEDLLPNLFDPFVTTK +GSGLG Sbjct: 273 IHLTTAFRPGVRLSVPGKKTRVSLPLEFCVKDNGPGVPEDLLPNLFDPFVTTKASGSGLG 332 Query: 204 LALVAKIVGDHGGIIECESQPRKTTFRVLMPMYSAAKQLDQSNRDDVPGTSSPASQDAR 262 LALVAKIVGDHGGIIECESQPRKT+FRVL+PM+S AK +QSN +DVP SS ASQ AR Sbjct: 333 LALVAKIVGDHGGIIECESQPRKTSFRVLLPMFSTAKNGNQSNGEDVPA-SSHASQTAR 390 >ref|NP_947934.1| signal transduction histidine kinase nitrogen specific NtrB [Rhodopseudomonas palustris CGA009] ref|YP_001991845.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris TIE-1] emb|CAE28033.1| nitrogen regulatory signal transduction histidine kinase NtrB [Rhodopseudomonas palustris CGA009] gb|ACF01370.1| signal transduction histidine kinase, nitrogen specific, NtrB [Rhodopseudomonas palustris TIE-1] Length = 390 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/239 (87%), Positives = 222/239 (92%), Gaps = 1/239 (0%) Query: 24 GPGAGIRGAAQLLEQQASSEDRLLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 83 P +GIRGAAQLLEQQAS+EDR+LTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS Sbjct: 153 NPLSGIRGAAQLLEQQASAEDRMLTRLICDEADRIVTLVDRMEVFGDDRPVARGPVNIHS 212 Query: 84 VLDHVKRLAQSGFARNVRFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVADLGTDAE 143 VLDHVKRLAQSGFARN++FIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAV DLG+D E Sbjct: 213 VLDHVKRLAQSGFARNIKFIEDYDPSLPPVLANQDQLIQVFLNLVKNAAEAVVDLGSDGE 272 Query: 144 IQLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDNGSGVPEDLLPNLFDPFVTTKQTGSGLG 203 IQLTTAFRPGVRLSVPGKK+RVSLPLEFCV+DNG GVPEDLLPNLFDPFVTTK +GSGLG Sbjct: 273 IQLTTAFRPGVRLSVPGKKTRVSLPLEFCVRDNGPGVPEDLLPNLFDPFVTTKPSGSGLG 332 Query: 204 LALVAKIVGDHGGIIECESQPRKTTFRVLMPMYSAAKQLDQSNRDDVPGTSSPASQDAR 262 LALVAKIVGDHGGIIECESQPRKTTFRVLMPM++ AK L N +D P SS ASQ AR Sbjct: 333 LALVAKIVGDHGGIIECESQPRKTTFRVLMPMFNTAKALQSPNGEDAPA-SSDASQTAR 390