BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0012.p         (57 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_579055.1| ATP-dependent DNA ligase [Nitrobacter hamburgen...    94   8e-18
ref|NP_771853.1| ATP-dependent DNA ligase [Bradyrhizobium japoni...    80   1e-13
ref|YP_001236299.1| ATP-dependent DNA ligase [Bradyrhizobium sp....    79   3e-13
ref|YP_001821013.1| ATP-dependent DNA ligase [Opitutus terrae PB...    77   9e-13
ref|YP_001202307.1| ATP-dependent DNA ligase [Bradyrhizobium sp....    76   1e-12

>ref|YP_579055.1| ATP-dependent DNA ligase [Nitrobacter hamburgensis X14]
 gb|ABE64595.1| ATP dependent DNA ligase [Nitrobacter hamburgensis X14]
          Length = 341

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 46/54 (85%)

Query: 1   VKPKYVVEVSYDHFTGGRFRHGTTILRWRSDKKADQCTMEQMKQKIARDLMRAI 54
           +KPKYVVEVSYDHFTGGRFRHGT+ILRWR DKK  QCT EQ+ QKI R LM AI
Sbjct: 282 LKPKYVVEVSYDHFTGGRFRHGTSILRWRPDKKPRQCTFEQVHQKIDRRLMAAI 335


>ref|NP_771853.1| ATP-dependent DNA ligase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50478.1| blr5213 [Bradyrhizobium japonicum USDA 110]
          Length = 338

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (88%)

Query: 1   VKPKYVVEVSYDHFTGGRFRHGTTILRWRSDKKADQCTMEQMKQ 44
           VKPK+VVEVSYDH T GRFRHGTTI+RWR DKK  QCTM+Q++Q
Sbjct: 282 VKPKFVVEVSYDHSTAGRFRHGTTIIRWRPDKKPRQCTMDQLEQ 325


>ref|YP_001236299.1| ATP-dependent DNA ligase [Bradyrhizobium sp. BTAi1]
 gb|ABQ32393.1| putative ATP-dependent DNA ligase [Bradyrhizobium sp. BTAi1]
          Length = 337

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 39/50 (78%)

Query: 1   VKPKYVVEVSYDHFTGGRFRHGTTILRWRSDKKADQCTMEQMKQKIARDL 50
           +KPK V+EV YDHF+G RFRHGT+ILRWR DK   QCT EQ+KQ IA  L
Sbjct: 284 LKPKLVIEVCYDHFSGDRFRHGTSILRWRPDKSPRQCTFEQLKQTIADPL 333


>ref|YP_001821013.1| ATP-dependent DNA ligase [Opitutus terrae PB90-1]
 gb|ACB77413.1| ATP dependent DNA ligase [Opitutus terrae PB90-1]
          Length = 345

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 1   VKPKYVVEVSYDHFTGGRFRHGTTILRWRSDKKADQCTMEQMKQKIARDL 50
           ++PK VVEVS+DH T GRFRHGT++LRWR DK   QCT+EQ+ QK +R L
Sbjct: 292 LEPKLVVEVSFDHVTAGRFRHGTSLLRWRPDKAPRQCTLEQLHQKTSRAL 341


>ref|YP_001202307.1| ATP-dependent DNA ligase [Bradyrhizobium sp. ORS 278]
 emb|CAL74057.1| putative ATP-dependent DNA ligase [Bradyrhizobium sp. ORS 278]
          Length = 337

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 1   VKPKYVVEVSYDHFTGGRFRHGTTILRWRSDKKADQCTMEQMKQKIA 47
           +KPK V+EV YDHF+G RFRHGT+ILRWR DK   QCT +Q+ QK+A
Sbjct: 284 LKPKLVIEVCYDHFSGERFRHGTSILRWRPDKAPKQCTFDQLAQKVA 330