BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0169.0006.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium ja...   170   7e-41
ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobi...   169   1e-40
ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobi...   161   3e-38
ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium ja...   157   6e-37
ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacte...   157   7e-37

>ref|NP_771856.1| hypothetical protein bll5216 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50481.1| bll5216 [Bradyrhizobium japonicum USDA 110]
          Length = 200

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 93/114 (81%), Gaps = 8/114 (7%)

Query: 8   RNRATLIGSDKVEGTTVYGADSQKIGSIERVMIDKKSGKVSYAVLSFGGLLGIGDDHYPL 67
           R   +LIGSDKVEGT VYG D +K+G +ERVMIDK SGKVSYAVLSFGGLLGIGDDHYPL
Sbjct: 94  RETFSLIGSDKVEGTNVYGVDGEKVGYVERVMIDKISGKVSYAVLSFGGLLGIGDDHYPL 153

Query: 68  PWQSLKYDTNLGGYVTGVTESQLQGAPKYRDETAWNWNDPAAGRSVNDYYRVPI 121
           PWQ+LKYDTNLGGYVTG+T+        Y DE++WNW+DPA  RSVN YY VP+
Sbjct: 154 PWQALKYDTNLGGYVTGITQ--------YADESSWNWSDPATTRSVNAYYGVPV 199


>ref|YP_001205924.1| hypothetical protein BRADO3942 [Bradyrhizobium sp. ORS 278]
 emb|CAL77699.1| conserved hypothetical protein with Photosynthetic reaction centre
           domain (PCR-barrel) [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 96/121 (79%), Gaps = 3/121 (2%)

Query: 1   MLWHSKRRNRATLIGSDKVEGTTVYGADSQKIGSIERVMIDKKSGKVSYAVLSFGGLLGI 60
           ML  S+  N   LIGSDKVEGT VYGAD  +IG+IERVMIDK SG+VSYAVL+FGG LG+
Sbjct: 8   MLEQSEYGN---LIGSDKVEGTAVYGADGDRIGTIERVMIDKLSGRVSYAVLAFGGFLGL 64

Query: 61  GDDHYPLPWQSLKYDTNLGGYVTGVTESQLQGAPKYRDETAWNWNDPAAGRSVNDYYRVP 120
           G+DHYPLPW SLKYDT LGGYVT VT+ QL+GAPKY DE  W+W D A GR V+DYY V 
Sbjct: 65  GNDHYPLPWPSLKYDTQLGGYVTAVTQDQLRGAPKYSDEREWDWGDLATGRKVDDYYGVQ 124

Query: 121 I 121
           +
Sbjct: 125 L 125


>ref|YP_001239877.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35971.1| hypothetical protein BBta_3900 [Bradyrhizobium sp. BTAi1]
          Length = 125

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 95/115 (82%)

Query: 7   RRNRATLIGSDKVEGTTVYGADSQKIGSIERVMIDKKSGKVSYAVLSFGGLLGIGDDHYP 66
           +R    LIGSDKVEGT VYGAD  KIG+IERVMIDK SG+VSY VL+FGGLLG+G+DHYP
Sbjct: 10  QREYGNLIGSDKVEGTAVYGADDSKIGTIERVMIDKLSGRVSYVVLAFGGLLGLGNDHYP 69

Query: 67  LPWQSLKYDTNLGGYVTGVTESQLQGAPKYRDETAWNWNDPAAGRSVNDYYRVPI 121
           LPWQSLKYDT LGGYVTGVTE QL+GAPKY DE  W+W D A GR V+DYY + +
Sbjct: 70  LPWQSLKYDTRLGGYVTGVTEEQLRGAPKYSDEREWDWGDLATGRKVDDYYGIKL 124


>ref|NP_774299.1| hypothetical protein bll7659 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52924.1| bll7659 [Bradyrhizobium japonicum USDA 110]
          Length = 110

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 85/101 (84%)

Query: 8   RNRATLIGSDKVEGTTVYGADSQKIGSIERVMIDKKSGKVSYAVLSFGGLLGIGDDHYPL 67
           R   +LIGSD VEGT VYGAD +K+G IERVMIDK SGKVS+AVLSF GLL IGD HYPL
Sbjct: 6   RETFSLIGSDNVEGTNVYGADGEKVGYIERVMIDKVSGKVSHAVLSFDGLLRIGDVHYPL 65

Query: 68  PWQSLKYDTNLGGYVTGVTESQLQGAPKYRDETAWNWNDPA 108
           PWQ+LKYDTNL GYVTG+T+  L+ APKY DE++WNW+DPA
Sbjct: 66  PWQALKYDTNLCGYVTGITQDHLRSAPKYADESSWNWSDPA 106


>ref|ZP_01045318.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
 gb|EAQ36646.1| hypothetical protein NB311A_15302 [Nitrobacter sp. Nb-311A]
          Length = 170

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 82/96 (85%)

Query: 12  TLIGSDKVEGTTVYGADSQKIGSIERVMIDKKSGKVSYAVLSFGGLLGIGDDHYPLPWQS 71
           TLIGSDKVEGT V+G   +KIGSIERVMI+K SG+VSYAVLSFGG LGIGDDHYPLPW +
Sbjct: 10  TLIGSDKVEGTAVFGPTDEKIGSIERVMIEKTSGRVSYAVLSFGGFLGIGDDHYPLPWHT 69

Query: 72  LKYDTNLGGYVTGVTESQLQGAPKYRDETAWNWNDP 107
           LKYDT LGGY TG+T  QLQ APKY+ E+ WNW++P
Sbjct: 70  LKYDTRLGGYRTGITLDQLQKAPKYQTESNWNWSEP 105