BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0031.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773705.1| ABC transporter permease [Bradyrhizobium japoni... 575 e-162 ref|YP_764735.1| putative permease component of ABC transporter ... 397 e-108 ref|YP_002973500.1| binding-protein-dependent transport systems ... 397 e-108 ref|YP_002277989.1| binding-protein-dependent transport systems ... 395 e-108 ref|ZP_01227617.1| putative permease protein, ABC-type sugar tra... 395 e-108 >ref|NP_773705.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC52330.1| blr7065 [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 284/305 (93%), Positives = 294/305 (96%) Query: 2 HQPGWLARLFDYKPFLIVMCLAPAIGLLLVFLTYPLGLGIWLAFTDTTIGQRGIYIGLEN 61 QP WL RLFDYKPFLIVMCLAPAIGLL VFLTYPLGLGIWLAFTDTTIG++G Y+GLEN Sbjct: 14 RQPSWLVRLFDYKPFLIVMCLAPAIGLLAVFLTYPLGLGIWLAFTDTTIGRKGDYVGLEN 73 Query: 62 FQYLLKDPLWWNAVFYSIFYTAIATFGKFALGFWLALLLNNHFPFKSLIRAIVLLPWIVP 121 FQYLL DPLWWNAVFYS+ YT IATFGKFALGFWLALLLNNHFPFKSL+RAI+LLPWIVP Sbjct: 74 FQYLLTDPLWWNAVFYSVVYTGIATFGKFALGFWLALLLNNHFPFKSLLRAIILLPWIVP 133 Query: 122 TVLSALAFWWIYDPQFSIISYLLVDVLHWRDSNVDFLGSPWPARFSLIAANIWRGIPFVA 181 TVLSALAFWWIYDPQFSIISYLLVDVLHWR SN+DFLGSPWPARFSLI ANIWRGIPFVA Sbjct: 134 TVLSALAFWWIYDPQFSIISYLLVDVLHWRSSNIDFLGSPWPARFSLIVANIWRGIPFVA 193 Query: 182 ISLLAGLQTISPSLYEAAMLDGATSWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY 241 ISLLAGLQTISPSLYEAAMLDGA++WQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY Sbjct: 194 ISLLAGLQTISPSLYEAAMLDGASAWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY 253 Query: 242 AITRGGPVNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ 301 AITRGGP NSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ Sbjct: 254 AITRGGPGNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ 313 Query: 302 GEAND 306 GE+ND Sbjct: 314 GESND 318 >ref|YP_764735.1| putative permease component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] emb|CAK11936.1| putative permease component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] Length = 312 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/304 (64%), Positives = 243/304 (79%), Gaps = 1/304 (0%) Query: 2 HQPGWLARLFDYKPFLIVMCLAPAIGLLLVFLTYPLGLGIWLAFTDTTIGQRGIYIGLEN 61 + G ++ L L + + PA L+ FLTYPLGLG+WL FTDT IG+ GI+IGLEN Sbjct: 10 DRRGPISSLLQNNNVLGFLFMLPAAVFLVCFLTYPLGLGVWLGFTDTRIGRDGIFIGLEN 69 Query: 62 FQYLLKDPLWWNAVFYSIFYTAIATFGKFALGFWLALLLNNHFPFKSLIRAIVLLPWIVP 121 +Q+L+ D ++W +VF +I YT++A+ KFALG WLA+LLN H PFKS RAIVLLPW+VP Sbjct: 70 YQFLMDDSVFWLSVFNTILYTSVASVLKFALGLWLAMLLNQHLPFKSFFRAIVLLPWVVP 129 Query: 122 TVLSALAFWWIYDPQFSIISYLLVDVLHWRDSNVDFLGSPWPARFSLIAANIWRGIPFVA 181 TVLSALAFWWIYD QFSIIS+ L+ L ++FLG P AR S+I AN+WRGIPFVA Sbjct: 130 TVLSALAFWWIYDSQFSIISWSLMQ-LGLISGPINFLGDPINARISVIVANVWRGIPFVA 188 Query: 182 ISLLAGLQTISPSLYEAAMLDGATSWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY 241 ISLLAGLQTI SL EAA LDGATSWQRFRY+T PM+ PI+A+VMTFS++FTFTDFQL+Y Sbjct: 189 ISLLAGLQTIPASLQEAASLDGATSWQRFRYVTLPMLTPIIAVVMTFSVLFTFTDFQLIY 248 Query: 242 AITRGGPVNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ 301 +T+GGPVN+THL+ATL+FQRGI GG+LGEGAAIAV+M+PFL+ A +FS+FGL RRKWQQ Sbjct: 249 VLTKGGPVNATHLMATLSFQRGIPGGQLGEGAAIAVAMVPFLLGAIMFSFFGLQRRKWQQ 308 Query: 302 GEAN 305 G + Sbjct: 309 GGQD 312 >ref|YP_002973500.1| binding-protein-dependent transport systems inner membrane component [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS59539.1| binding-protein-dependent transport systems inner membrane component [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 310 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/304 (64%), Positives = 244/304 (80%), Gaps = 1/304 (0%) Query: 2 HQPGWLARLFDYKPFLIVMCLAPAIGLLLVFLTYPLGLGIWLAFTDTTIGQRGIYIGLEN 61 + G ++ L L + + PA L+ FLTYPLGLG+WL FTDT IG+ G++IGLEN Sbjct: 8 DRRGPISSLLQNNNVLGFLFMLPAAVFLVCFLTYPLGLGVWLGFTDTRIGRDGVFIGLEN 67 Query: 62 FQYLLKDPLWWNAVFYSIFYTAIATFGKFALGFWLALLLNNHFPFKSLIRAIVLLPWIVP 121 +Q+L+ D ++W +VF +I YT++A+ KFALG WLA+LLN H PFKS RAIVLLPW+VP Sbjct: 68 YQFLMDDSVFWLSVFNTILYTSVASVLKFALGLWLAMLLNQHLPFKSFFRAIVLLPWVVP 127 Query: 122 TVLSALAFWWIYDPQFSIISYLLVDVLHWRDSNVDFLGSPWPARFSLIAANIWRGIPFVA 181 TVLSALAFWWIYD QFSIIS+ L+ L + ++FLG P AR S+I AN+WRGIPFVA Sbjct: 128 TVLSALAFWWIYDSQFSIISWSLMQ-LGLINGPINFLGDPINARISVIVANVWRGIPFVA 186 Query: 182 ISLLAGLQTISPSLYEAAMLDGATSWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY 241 ISLLAGLQTI SL EAA LDGATSWQRFRY+T PM+ PI+A+VMTFS++FTFTDFQL+Y Sbjct: 187 ISLLAGLQTIPASLQEAASLDGATSWQRFRYVTLPMLTPIIAVVMTFSVLFTFTDFQLIY 246 Query: 242 AITRGGPVNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ 301 +T+GGPVN+THL+ATL+FQRGI GG+LGEGAAIAV+M+PFL+ A +FS+FGL RRKWQQ Sbjct: 247 VLTKGGPVNATHLMATLSFQRGIPGGQLGEGAAIAVAMVPFLLGAIMFSFFGLQRRKWQQ 306 Query: 302 GEAN 305 G + Sbjct: 307 GGQD 310 >ref|YP_002277989.1| binding-protein-dependent transport systems inner membrane component [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58889.1| binding-protein-dependent transport systems inner membrane component [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 310 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/304 (64%), Positives = 243/304 (79%), Gaps = 1/304 (0%) Query: 2 HQPGWLARLFDYKPFLIVMCLAPAIGLLLVFLTYPLGLGIWLAFTDTTIGQRGIYIGLEN 61 + G ++ L L + + PA L+ FLTYPLGLG+WL FTDT IG+ GI+IGLEN Sbjct: 8 DRRGPVSSLLQNNNVLGFLFMLPAAVFLVCFLTYPLGLGVWLGFTDTRIGRDGIFIGLEN 67 Query: 62 FQYLLKDPLWWNAVFYSIFYTAIATFGKFALGFWLALLLNNHFPFKSLIRAIVLLPWIVP 121 +Q+L+ D ++W +VF +I YT++A+ KFALG WLA+LLN H P+KS RAIVLLPW+VP Sbjct: 68 YQFLMDDSVFWLSVFNTILYTSVASVLKFALGLWLAMLLNQHLPYKSFFRAIVLLPWVVP 127 Query: 122 TVLSALAFWWIYDPQFSIISYLLVDVLHWRDSNVDFLGSPWPARFSLIAANIWRGIPFVA 181 TVLSALAFWWIYD QFSIIS+ L+ L ++FLG P AR S+I AN+WRGIPFVA Sbjct: 128 TVLSALAFWWIYDSQFSIISWSLMK-LGLISGPINFLGDPINARISVIVANVWRGIPFVA 186 Query: 182 ISLLAGLQTISPSLYEAAMLDGATSWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVY 241 ISLLAGLQTI SL EAA LDGATSWQRFRY+T PM+ PI+A+VMTFS++FTFTDFQL+Y Sbjct: 187 ISLLAGLQTIPASLQEAASLDGATSWQRFRYVTLPMLTPIIAVVMTFSVLFTFTDFQLIY 246 Query: 242 AITRGGPVNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQ 301 +T+GGPVN+THL+ATL+FQRGI GG+LGEGAAIAV+M+PFL+ A +FS+FGL RRKWQQ Sbjct: 247 VLTKGGPVNATHLMATLSFQRGIPGGQLGEGAAIAVAMVPFLLGAIMFSFFGLQRRKWQQ 306 Query: 302 GEAN 305 G + Sbjct: 307 GGQD 310 >ref|ZP_01227617.1| putative permease protein, ABC-type sugar transporter [Aurantimonas manganoxydans SI85-9A1] gb|EAS49497.1| putative permease protein, ABC-type sugar transporter [Aurantimonas manganoxydans SI85-9A1] Length = 310 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/300 (65%), Positives = 242/300 (80%), Gaps = 1/300 (0%) Query: 3 QPGWLARLFDYKPFLIVMCLAPAIGLLLVFLTYPLGLGIWLAFTDTTIGQRGIYIGLENF 62 +P R + L +M + PA LL FLTYPLGLGIWL+FTDTTIG+ GI+IGLEN+ Sbjct: 9 RPSVFRRFVQSRGGLGLMFMLPAAAFLLCFLTYPLGLGIWLSFTDTTIGRTGIFIGLENY 68 Query: 63 QYLLKDPLWWNAVFYSIFYTAIATFGKFALGFWLALLLNNHFPFKSLIRAIVLLPWIVPT 122 +L DP++W +V+ ++ YT +A+ KF LG WLAL+LN H PFK+ RAI+LLPW+VPT Sbjct: 69 AWLFDDPVFWLSVYNTMLYTTVASVLKFGLGLWLALILNEHLPFKNFFRAIILLPWVVPT 128 Query: 123 VLSALAFWWIYDPQFSIISYLLVDVLHWRDSNVDFLGSPWPARFSLIAANIWRGIPFVAI 182 VLSALAFWWI+D QFSIIS++L+ W D+ ++FLG P AR S+IAAN+WRGIPFVAI Sbjct: 129 VLSALAFWWIFDSQFSIISFVLMK-WGWIDAPINFLGDPTNARASVIAANVWRGIPFVAI 187 Query: 183 SLLAGLQTISPSLYEAAMLDGATSWQRFRYITFPMMMPILAIVMTFSIIFTFTDFQLVYA 242 SLLAGLQTI SL EAA LDGATSWQRF IT P++ PI+A+VMTFS++FTFTDFQL+Y Sbjct: 188 SLLAGLQTIPQSLNEAAALDGATSWQRFTKITLPLLTPIIAVVMTFSVLFTFTDFQLIYV 247 Query: 243 ITRGGPVNSTHLLATLAFQRGIAGGELGEGAAIAVSMIPFLVFATLFSYFGLARRKWQQG 302 +TRGGPVN+THL+ATL+FQR I GG+LGEGAAIAV+MIPFL+ A LFS+FGL RRKWQQG Sbjct: 248 LTRGGPVNATHLMATLSFQRAIPGGQLGEGAAIAVAMIPFLLAAILFSFFGLQRRKWQQG 307