BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0025.p (146 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_530826.1| biopolymer transport protein ExbD/TolR [Rhodops... 233 7e-60 ref|NP_773712.1| biopolymer transport protein [Bradyrhizobium ja... 231 3e-59 ref|YP_001991408.1| TonB system transport protein ExbD [Rhodopse... 229 1e-58 ref|NP_947473.1| biopolymer transport protein ExbD/TolR [Rhodops... 227 5e-58 ref|YP_569491.1| biopolymer transport protein ExbD/TolR [Rhodops... 226 9e-58 >ref|YP_530826.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris BisB18] gb|ABD86507.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris BisB18] Length = 145 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 122/147 (82%), Positives = 132/147 (89%), Gaps = 4/147 (2%) Query: 1 MGVKLGSGGTFRRRGD-DDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAS 59 M V+LG RR GD DDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAS Sbjct: 1 MAVRLGGS---RRGGDNDDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAS 57 Query: 60 TAEPQPRPDKPVFVTVKPDLSVAVGEDVIARETLTSTLDGATQGRKDERIFLRADKAVSY 119 T EPQPRP++PVFVT+KPDLSVAVGE+VIARE L LD AT+G+KDERIFLRADKAVSY Sbjct: 58 TVEPQPRPEQPVFVTLKPDLSVAVGEEVIAREALPGMLDTATKGQKDERIFLRADKAVSY 117 Query: 120 GDLMEVMNLLRNAGYLKIALVGLDGRS 146 G+LM VMNL+R+AGYLKIALVGLDGRS Sbjct: 118 GELMAVMNLMRDAGYLKIALVGLDGRS 144 >ref|NP_773712.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] emb|CAC38750.1| ExbD protein [Bradyrhizobium japonicum] dbj|BAC52337.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] Length = 148 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 119/147 (80%), Positives = 132/147 (89%), Gaps = 2/147 (1%) Query: 1 MGVKLGSG-GTFRRRGD-DDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPA 58 M KLG+G G+ +RGD DL HEINVTPFIDVMLVLLIIFMVAAPLATVD+GV+LPA Sbjct: 1 MAAKLGAGPGSPLKRGDPGDLDVTHEINVTPFIDVMLVLLIIFMVAAPLATVDIGVELPA 60 Query: 59 STAEPQPRPDKPVFVTVKPDLSVAVGEDVIARETLTSTLDGATQGRKDERIFLRADKAVS 118 + AEP PRPDKPVFVTVKPDLS+AVGEDV+ARE L+S+LD AT+GRKDERI+LRADKAVS Sbjct: 61 TAAEPAPRPDKPVFVTVKPDLSIAVGEDVVAREALSSSLDAATRGRKDERIYLRADKAVS 120 Query: 119 YGDLMEVMNLLRNAGYLKIALVGLDGR 145 YGDLMEVMN LRNAGYLK+ALVGLDGR Sbjct: 121 YGDLMEVMNSLRNAGYLKVALVGLDGR 147 >ref|YP_001991408.1| TonB system transport protein ExbD [Rhodopseudomonas palustris TIE-1] gb|ACF00933.1| TonB system transport protein ExbD [Rhodopseudomonas palustris TIE-1] Length = 145 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/146 (78%), Positives = 129/146 (88%), Gaps = 4/146 (2%) Query: 1 MGVKLGSGGTFRRRGDDDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAST 60 M VKL S RR GDDD+VEAHEINVTPFIDVMLVLLI+FMVAAPLATVD+GVDLPAST Sbjct: 1 MAVKLAS----RRGGDDDMVEAHEINVTPFIDVMLVLLIVFMVAAPLATVDVGVDLPAST 56 Query: 61 AEPQPRPDKPVFVTVKPDLSVAVGEDVIARETLTSTLDGATQGRKDERIFLRADKAVSYG 120 A PQPRP+KP+FV++KPDLS+A+GE+++ RE LTS LD T G KDERIFLRADKAVSYG Sbjct: 57 AAPQPRPEKPIFVSLKPDLSLALGEEMVPREALTSALDSVTGGNKDERIFLRADKAVSYG 116 Query: 121 DLMEVMNLLRNAGYLKIALVGLDGRS 146 DLM MNLLR+AGYLK+ALVGLDGR+ Sbjct: 117 DLMAAMNLLRDAGYLKVALVGLDGRA 142 >ref|NP_947473.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris CGA009] emb|CAE27569.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris CGA009] Length = 145 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 128/146 (87%), Gaps = 4/146 (2%) Query: 1 MGVKLGSGGTFRRRGDDDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAST 60 M VKL S RR GDDD+VEAHEINVTPFIDVMLVLLI+FMVAAPLATVD+GVDLPAST Sbjct: 1 MAVKLAS----RRGGDDDMVEAHEINVTPFIDVMLVLLIVFMVAAPLATVDVGVDLPAST 56 Query: 61 AEPQPRPDKPVFVTVKPDLSVAVGEDVIARETLTSTLDGATQGRKDERIFLRADKAVSYG 120 A PQPRP+KP+FV++KPDLS+A+GE+++ RE LTS LD T G KDERIFLRADKAVSYG Sbjct: 57 AAPQPRPEKPIFVSLKPDLSLALGEEMVPREALTSALDSVTGGNKDERIFLRADKAVSYG 116 Query: 121 DLMEVMNLLRNAGYLKIALVGLDGRS 146 DLM MNLLR+AGYLK+ALVGLDG + Sbjct: 117 DLMAAMNLLRDAGYLKVALVGLDGSA 142 >ref|YP_569491.1| biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris BisB5] gb|ABE39590.1| Biopolymer transport protein ExbD/TolR [Rhodopseudomonas palustris BisB5] Length = 145 Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 114/146 (78%), Positives = 127/146 (86%), Gaps = 3/146 (2%) Query: 1 MGVKLGSGGTFRRRGDDDLVEAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPAST 60 M VKLG+ R GDDDL E HEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLP ST Sbjct: 1 MAVKLGAK---RAGGDDDLAETHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPTST 57 Query: 61 AEPQPRPDKPVFVTVKPDLSVAVGEDVIARETLTSTLDGATQGRKDERIFLRADKAVSYG 120 AEPQ RPDKP+F+++KPDLS+A+GE VIARE + ++L AT G KDERIFLRADKAVSYG Sbjct: 58 AEPQARPDKPIFISLKPDLSLALGEQVIAREAVGASLGAATNGNKDERIFLRADKAVSYG 117 Query: 121 DLMEVMNLLRNAGYLKIALVGLDGRS 146 +LM VMNLLR+AGYLK+ALVGLDGRS Sbjct: 118 ELMAVMNLLRDAGYLKVALVGLDGRS 143