BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0024.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773713.1| biopolymer transport protein [Bradyrhizobium ja... 357 7e-97 emb|CAC38749.1| ExbB protein [Bradyrhizobium japonicum] 357 9e-97 ref|YP_571124.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas... 351 8e-95 ref|YP_530825.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas... 348 6e-94 ref|YP_484862.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas... 341 7e-92 >ref|NP_773713.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52338.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 357 bits (917), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 183/232 (78%), Positives = 202/232 (87%) Query: 30 DAALLPRNLSPWGMFESADIVVKTVMIGLAFASLATWTVWLAKTIEIRRKTALARQRIGL 89 D ALLPRNLSPWGMF ADI+VKTVMIGLA AS+ TWTVWLAKT+E+RRK+ALA QR Sbjct: 30 DEALLPRNLSPWGMFLGADIIVKTVMIGLAVASVVTWTVWLAKTVELRRKSALAVQRTRA 89 Query: 90 LERDTLLAEVEQASRDGNDAVAQIVQSASREAALSGGTFDDGFKERIALRLERVEAAMSR 149 LE LAE + + D +DAVAQ++QS ++EA LSGG DDG +ER+ALRLERVEAAMSR Sbjct: 90 LEGRMKLAEAAERTGDAHDAVAQLIQSCAKEAELSGGIVDDGLQERVALRLERVEAAMSR 149 Query: 150 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIAEALLATALG 209 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISE+HTT+LAVVAPGIAEALLATALG Sbjct: 150 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISESHTTSLAVVAPGIAEALLATALG 209 Query: 210 LVAAIPAVVIYNHLTRSIASYRALLGDASVMVMLLVSREGDRSLFRLARAAE 261 LVAAIPAVVIYNHL R IA+YRALLGDAS +MLLVSR+ D S FRLARAAE Sbjct: 210 LVAAIPAVVIYNHLVRGIANYRALLGDASAQLMLLVSRQRDISDFRLARAAE 261 >emb|CAC38749.1| ExbB protein [Bradyrhizobium japonicum] Length = 258 Score = 357 bits (916), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 183/232 (78%), Positives = 202/232 (87%) Query: 30 DAALLPRNLSPWGMFESADIVVKTVMIGLAFASLATWTVWLAKTIEIRRKTALARQRIGL 89 D ALLPRNLSPWGMF ADI+VKTVMIGLA AS+ TWTVWLAKT+E+RRK+ALA QR Sbjct: 27 DEALLPRNLSPWGMFLGADIIVKTVMIGLAVASVVTWTVWLAKTVELRRKSALAVQRTRA 86 Query: 90 LERDTLLAEVEQASRDGNDAVAQIVQSASREAALSGGTFDDGFKERIALRLERVEAAMSR 149 LE LAE + + D +DAVAQ++QS ++EA LSGG DDG +ER+ALRLERVEAAMSR Sbjct: 87 LEGRMKLAEAAERTGDAHDAVAQLIQSCAKEAELSGGIVDDGLQERVALRLERVEAAMSR 146 Query: 150 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIAEALLATALG 209 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISE+HTT+LAVVAPGIAEALLATALG Sbjct: 147 QIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISESHTTSLAVVAPGIAEALLATALG 206 Query: 210 LVAAIPAVVIYNHLTRSIASYRALLGDASVMVMLLVSREGDRSLFRLARAAE 261 LVAAIPAVVIYNHL R IA+YRALLGDAS +MLLVSR+ D S FRLARAAE Sbjct: 207 LVAAIPAVVIYNHLVRGIANYRALLGDASAQLMLLVSRQRDISDFRLARAAE 258 >ref|YP_571124.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB5] gb|ABE41223.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB5] Length = 267 Score = 351 bits (900), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 182/242 (75%), Positives = 207/242 (85%), Gaps = 1/242 (0%) Query: 20 MLPGASLAAADAALLPRNLSPWGMFESADIVVKTVMIGLAFASLATWTVWLAKTIEIRRK 79 +L G AAAD LLPR+LSPWGMF++ADIVVK VM GLA ASLATWTVWL+KTIE+R + Sbjct: 27 LLCGPGFAAADGGLLPRDLSPWGMFKNADIVVKIVMTGLAVASLATWTVWLSKTIELRHE 86 Query: 80 TALARQRIGLLERDTLLAEVEQASRDGNDAVAQIVQSASREAALSGGTFDDGFKERIALR 139 TA AR + LE DT LAE+ A + +DAVAQ+VQ+A+REA+LSG TFDD FK+R+ LR Sbjct: 87 TARARDGLAKLEADTTLAELRSAD-EAHDAVAQLVQTAAREASLSGWTFDDDFKDRVGLR 145 Query: 140 LERVEAAMSRQIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGI 199 LERVEAAMSR+IARGTG+LATIGA APFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGI Sbjct: 146 LERVEAAMSRRIARGTGILATIGAVAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGI 205 Query: 200 AEALLATALGLVAAIPAVVIYNHLTRSIASYRALLGDASVMVMLLVSREGDRSLFRLARA 259 AEALLATALGLVAA+PAVVIYN+L R IA+YRALLGDAS V+LLVSR+ RS +ARA Sbjct: 206 AEALLATALGLVAAVPAVVIYNYLVRQIANYRALLGDASAQVLLLVSRDRGRSARLMARA 265 Query: 260 AE 261 AE Sbjct: 266 AE 267 >ref|YP_530825.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB18] gb|ABD86506.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB18] Length = 283 Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 184/241 (76%), Positives = 208/241 (86%) Query: 21 LPGASLAAADAALLPRNLSPWGMFESADIVVKTVMIGLAFASLATWTVWLAKTIEIRRKT 80 LP + AAAD A LPRNLSPWGMF++ADIVVK VM+GLA ASLATWTVWL+KT+E+RR+T Sbjct: 43 LPTLASAAADLAALPRNLSPWGMFQNADIVVKVVMVGLALASLATWTVWLSKTLELRRET 102 Query: 81 ALARQRIGLLERDTLLAEVEQASRDGNDAVAQIVQSASREAALSGGTFDDGFKERIALRL 140 A QR+ LLE DT L ++EQ D NDAVAQ++ SASREA+LSGG FDD FKER+ALRL Sbjct: 103 ERALQRLALLESDTPLRDIEQDCTDANDAVAQLILSASREASLSGGVFDDAFKERVALRL 162 Query: 141 ERVEAAMSRQIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIA 200 ERVE AMSR+IARGTG+LATIGAT+PF+GLFGTVWGIMNAFIGIS+AHTTNLAVVAPGIA Sbjct: 163 ERVEGAMSRRIARGTGILATIGATSPFIGLFGTVWGIMNAFIGISQAHTTNLAVVAPGIA 222 Query: 201 EALLATALGLVAAIPAVVIYNHLTRSIASYRALLGDASVMVMLLVSREGDRSLFRLARAA 260 EALLATALGLVAAIPAVVIYNHL R IA YRALLGDAS ++LL+SR+ R RL RAA Sbjct: 223 EALLATALGLVAAIPAVVIYNHLARVIAGYRALLGDASAQLLLLLSRDKGRRGARLGRAA 282 Query: 261 E 261 E Sbjct: 283 E 283 >ref|YP_484862.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris HaA2] gb|ABD05951.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris HaA2] Length = 266 Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 180/240 (75%), Positives = 204/240 (85%), Gaps = 3/240 (1%) Query: 22 PGASLAAADAALLPRNLSPWGMFESADIVVKTVMIGLAFASLATWTVWLAKTIEIRRKTA 81 PG +AA D A LPR+LSPWGMF SADIVV+ VM GL ASLATWTVWL+KT+E+RR+TA Sbjct: 30 PG--VAATDVASLPRDLSPWGMFTSADIVVQVVMAGLVVASLATWTVWLSKTLELRRETA 87 Query: 82 LARQRIGLLERDTLLAEVEQASRDGNDAVAQIVQSASREAALSGGTFDDGFKERIALRLE 141 AR + LE D LAE+ A + DAVAQ+VQ+A+REA+LSG +FDD FKER+ALRLE Sbjct: 88 RARDGLARLEADVTLAELRSAD-EAQDAVAQLVQTAAREASLSGWSFDDEFKERVALRLE 146 Query: 142 RVEAAMSRQIARGTGVLATIGATAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIAE 201 RVEAAMSR+IARGTG+LATIGA APFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIAE Sbjct: 147 RVEAAMSRRIARGTGILATIGAVAPFVGLFGTVWGIMNAFIGISEAHTTNLAVVAPGIAE 206 Query: 202 ALLATALGLVAAIPAVVIYNHLTRSIASYRALLGDASVMVMLLVSREGDRSLFRLARAAE 261 ALLATALGLVAA+PAVVIYN+L R IA+YRALLGDAS V+LLVSR+ RS +ARAAE Sbjct: 207 ALLATALGLVAAVPAVVIYNYLVRGIANYRALLGDASAQVLLLVSRDRGRSARLMARAAE 266