BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0012.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002500031.1| AraC family transcriptional regulator [Methy... 218 1e-54 ref|YP_001691230.1| hypothetical protein M446_6972 [Methylobacte... 210 2e-52 ref|ZP_08770370.1| transcriptional regulator, AraC family [Thioc... 207 2e-51 ref|YP_001768513.1| AraC family transcriptional regulator [Methy... 205 8e-51 ref|YP_002422835.1| AraC family transcriptional regulator [Methy... 204 1e-50 >ref|YP_002500031.1| AraC family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL59728.1| transcriptional regulator, AraC family [Methylobacterium nodulans ORS 2060] Length = 365 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 180/312 (57%), Gaps = 3/312 (0%) Query: 1 LRELGKDPAGVIAGAGINLDLLRNPENSISFIALGRLIEAGVAATGCQHFGFLVGQRSGT 60 L + G DP + GI+ L E ISF +LGRL G + C HFG LVGQR+ Sbjct: 46 LIDFGIDPNRLFEQDGISTLFLDGTE-VISFASLGRLTALGAHCSQCPHFGLLVGQRTTL 104 Query: 61 ASLGLVGRLMHTAPTLKDAILDLCTNQRRYVRGAVTYLVIQDDVAFWGYAVHYPGVQAVD 120 ASLGL+G LM + T+ DA+ L + RGAV + I +A Y+++ P + V Sbjct: 105 ASLGLLGVLMRNSETIGDALRALEAHHGLMNRGAVVGVSIDSTLAIVSYSLYQPDAEGVA 164 Query: 121 QISDGAIAIGFNMMRELVGA--APEEVRTSRRTPSNVEPYRRFFGFVPRFDAEQHALVFP 178 + A+A N++R GA AP+EV R P + PYR FF RF+ E ALVFP Sbjct: 165 LHCERALAAMTNVLRAFCGADWAPDEVLLPRSQPPDTTPYRDFFHAHIRFEEEIAALVFP 224 Query: 179 ASLLDRPVRGANGELRRILEKSIAAYWAVEQPCVTDTVTRMLRARVIFPDVSLEEVASEL 238 A LL P+ GAN R+++E+ I AV VTD + R LRA + +S ++VA + Sbjct: 225 ARLLKHPIEGANPVARKVVERRIQQLEAVIPADVTDELRRRLRATMTQKPLSAQQVARMM 284 Query: 239 SVRPRTLNRRLQAEGKSFRELVNQSRFEVARQLLAGTRMDITDIALALGYAELSGFSHAF 298 ++ RTL+RRL++EG SFR + N++R +A+QLLA T + + I+ L ++E + F+HAF Sbjct: 285 AIHRRTLSRRLKSEGTSFRLVANETRLGIAKQLLADTTLSLAQISATLEFSEPAAFTHAF 344 Query: 299 QRWSGVAPSEWR 310 +RW+G PS WR Sbjct: 345 RRWTGTTPSAWR 356 >ref|YP_001691230.1| hypothetical protein M446_6972 [Methylobacterium sp. 4-46] gb|ACA21205.1| hypothetical protein M446_6972 [Methylobacterium sp. 4-46] Length = 372 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 176/314 (56%), Gaps = 3/314 (0%) Query: 1 LRELGKDPAGVIAGAGINLDLLRNPENSISFIALGRLIEAGVAATGCQHFGFLVGQRSGT 60 L EL +P ++ AGI+ + E +ISF +LGRL T C HFG L+GQR Sbjct: 56 LVELKIEPEKILKLAGIDTQIFGTIE-AISFASLGRLTALAADQTQCAHFGLLIGQRVTL 114 Query: 61 ASLGLVGRLMHTAPTLKDAILDLCTNQRRYVRGAVTYLVIQDDVAFWGYAVHYPGVQAVD 120 ASLGL+G M + T+ DA+ + T+ RGAV L I VA YA + P ++ V Sbjct: 115 ASLGLLGTRMRHSETVGDALQAVRTHHDLLNRGAVIELSIDGPVAIVSYAPYEPDIEGVA 174 Query: 121 QISDGAIAIGFNMMRELVGA--APEEVRTSRRTPSNVEPYRRFFGFVPRFDAEQHALVFP 178 + AIA +++R L +PEEV R P + PY RFF RF E ALVFP Sbjct: 175 LHCERAIAALTSVLRSLCSPHWSPEEVLLPRLEPEDTTPYTRFFRAPVRFSQEIAALVFP 234 Query: 179 ASLLDRPVRGANGELRRILEKSIAAYWAVEQPCVTDTVTRMLRARVIFPDVSLEEVASEL 238 A +L RPV GAN +R +E+ I AV +TD V R +R+ V + VA L Sbjct: 235 ARVLRRPVEGANPLIRAAVERRIQQLEAVIPSGLTDEVRRRVRSTVSEKRIERLHVAQSL 294 Query: 239 SVRPRTLNRRLQAEGKSFRELVNQSRFEVARQLLAGTRMDITDIALALGYAELSGFSHAF 298 ++ RTL RRL+AEG +FR + NQ+R +A+QLLA T + + I+ AL ++E F+ AF Sbjct: 295 AIHQRTLARRLKAEGTTFRSVANQTRLAMAKQLLANTNLSLARISAALEFSEPPAFTRAF 354 Query: 299 QRWSGVAPSEWRSN 312 RW+G+APS WR + Sbjct: 355 HRWTGMAPSAWRKD 368 >ref|ZP_08770370.1| transcriptional regulator, AraC family [Thiocapsa marina 5811] gb|EGV18690.1| transcriptional regulator, AraC family [Thiocapsa marina 5811] Length = 356 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/316 (39%), Positives = 183/316 (57%), Gaps = 6/316 (1%) Query: 1 LRELGKDPAGVIAGAGINLDLLRNPENSISFIALGRLIEAGVAATGCQHFGFLVGQRSGT 60 L E G DPA + A AG+++ L +PE I A GRL+ +GC FG +G++ G Sbjct: 35 LVEFGLDPASITAEAGLDIGLFDDPEQGIPLAAAGRLLALAAERSGCPSFGHRLGEQVGL 94 Query: 61 ASLGLVGRLMHTAPTLKDAILDLCTNQRRYVRGAVTYLVIQDDVAFWGYAVHYPGVQAVD 120 +LG +G+L +AP + A+ + + RGAV L I D Y V+ V ++ Sbjct: 95 DALGRIGQLAKSAPDVSTALHQVVLYLHLHDRGAVPALWISADRVVMAYVVYQAEVPGIE 154 Query: 121 QISDGAIAIGFNMMRELVGAA--PEEVRTSRRTPSNVEPYRRFFGFVPRFDAEQHALVFP 178 I DGA+AI FN+++ L GA P EVR SR P++VEPYRRF+ F AE A+VF Sbjct: 155 HIYDGAVAITFNIVKLLCGAGFEPIEVRLSRPRPADVEPYRRFYRSRISFGAEHSAVVFS 214 Query: 179 ASLLDRPVRGANGELRRILEKSIAAYWAVEQPCVTDTVTRMLRARVIF----PDVSLEEV 234 A L RP+ GA+G L + L + I + + + R++R ++ D SL + Sbjct: 215 ADWLKRPLDGADGVLHKQLLQIIEFADVRGEENLVANLRRVIRCILVQGVAPEDTSLAHI 274 Query: 235 ASELSVRPRTLNRRLQAEGKSFRELVNQSRFEVARQLLAGTRMDITDIALALGYAELSGF 294 A S+ RTLNRRLQ+ G +F+ L++++R++VARQLL T + + DIA +L YA+ + F Sbjct: 275 ARLFSLHRRTLNRRLQSLGTTFKTLIDEARYDVARQLLRDTSLPVVDIAASLDYADAAAF 334 Query: 295 SHAFQRWSGVAPSEWR 310 S AF+RWSGV+P WR Sbjct: 335 SRAFKRWSGVSPGAWR 350 >ref|YP_001768513.1| AraC family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA16079.1| transcriptional regulator, AraC family [Methylobacterium sp. 4-46] Length = 376 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 3/311 (0%) Query: 4 LGKDPAGVIAGAGINLDLLRNPENSISFIALGRLIEAGVAATGCQHFGFLVGQRSGTASL 63 LG +PA ++ +GI L ++SF +LGRL+ + C HFG LVGQR+ ASL Sbjct: 48 LGIEPAPLLVQSGIGPRCLEG-AGALSFESLGRLMALAARRSACPHFGLLVGQRTTLASL 106 Query: 64 GLVGRLMHTAPTLKDAILDLCTNQRRYVRGAVTYLVIQDDVAFWGYAVHYPGVQAVDQIS 123 GL+G LM + T+ DA+ L T+ RGAV + + +A Y+ + P + + Sbjct: 107 GLLGVLMRNSETVGDALRVLETHHGLLNRGAVIRVAVNGPLAIASYSPYRPEAEGIALHC 166 Query: 124 DGAIAIGFNMMRELVGA--APEEVRTSRRTPSNVEPYRRFFGFVPRFDAEQHALVFPASL 181 + A+ N++R L G APEEV R P + PY F RF E AL FPA L Sbjct: 167 ERALTAMTNVIRSLCGGDWAPEEVLLPRLGPDDATPYANVFRAPVRFGQEIAALTFPARL 226 Query: 182 LDRPVRGANGELRRILEKSIAAYWAVEQPCVTDTVTRMLRARVIFPDVSLEEVASELSVR 241 L RP+ A+ +R++ E+ I + A +TD + R LRA + ++S + A L+V Sbjct: 227 LGRPIGDASPIVRKLAEQRIRQFAASMPADLTDELRRHLRATLTQGELSARQAAEALAVH 286 Query: 242 PRTLNRRLQAEGKSFRELVNQSRFEVARQLLAGTRMDITDIALALGYAELSGFSHAFQRW 301 RTL+RRL+AEG SFR + N++R VA+QLLA T + + +I++AL ++E + F+HAF+RW Sbjct: 287 RRTLSRRLRAEGTSFRSVANETRLSVAKQLLADTNLSLAEISVALEFSEPAAFTHAFRRW 346 Query: 302 SGVAPSEWRSN 312 +G PS WR Sbjct: 347 TGTTPSAWRKQ 357 >ref|YP_002422835.1| AraC family transcriptional regulator [Methylobacterium chloromethanicum CM4] gb|ACK84907.1| transcriptional regulator, AraC family [Methylobacterium chloromethanicum CM4] Length = 365 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 172/312 (55%), Gaps = 2/312 (0%) Query: 1 LRELGKDPAGVIAGAGINLDLLRNPENSISFIALGRLIEAGVAATGCQHFGFLVGQRSGT 60 L ELG D G+IA AG++ L + F A+GRLI + C H G LVG+++ Sbjct: 46 LVELGADLDGLIAAAGLDRRLFDASSKPVPFTAIGRLIALAADHSRCPHLGLLVGKQTTL 105 Query: 61 ASLGLVGRLMHTAPTLKDAILDLCTNQRRYVRGAVTYLVIQDDVAFWGYAVHYPGVQAVD 120 ASLGL+G L+ ++ A+ L + R RGAV L + +D+ YA H P + Sbjct: 106 ASLGLLGVLLRNCASVGKALQALEAHARVRDRGAVVGLGVYNDIVVLSYAPHEPEAEGAA 165 Query: 121 QISDGAIAIGFNMMRELVGA--APEEVRTSRRTPSNVEPYRRFFGFVPRFDAEQHALVFP 178 + A+A N++R L G AP V R P + PY FFG RFD E ALVFP Sbjct: 166 LHLERALATLTNILRGLYGPDWAPLGVLLPRSAPRDTVPYTEFFGAPVRFDQEAAALVFP 225 Query: 179 ASLLDRPVRGANGELRRILEKSIAAYWAVEQPCVTDTVTRMLRARVIFPDVSLEEVASEL 238 A+LL +P+ GA+ LR+ E I A + +TD + L+ V +E VA Sbjct: 226 AALLQQPIVGADPALRQRAEDHIRRLEADQPSTLTDKLREYLQTAVTQQRCRVERVARLR 285 Query: 239 SVRPRTLNRRLQAEGKSFRELVNQSRFEVARQLLAGTRMDITDIALALGYAELSGFSHAF 298 V RTL+R LQAEG SFR L N+++F VA+QLL T + + I+ AL ++E + F+HAF Sbjct: 286 LVNRRTLSRHLQAEGTSFRRLANEAQFRVAKQLLIDTSLALGQISAALDFSEPAAFTHAF 345 Query: 299 QRWSGVAPSEWR 310 +RWSGV PS WR Sbjct: 346 RRWSGVTPSAWR 357