BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0007.p (537 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774504.1| acyl-CoA synthetase [Bradyrhizobium japonicum U... 921 0.0 ref|YP_001020091.1| acyl-CoA synthetase [Methylibium petroleiphi... 686 0.0 ref|YP_001243252.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi... 672 0.0 ref|YP_001202861.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS ... 663 0.0 ref|YP_779783.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 635 e-180 >ref|NP_774504.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC53129.1| bll7864 [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/535 (82%), Positives = 482/535 (90%) Query: 1 MSGDIAATIQRAREHSIGDLLRRSAKRYPGKTALICGEVSWSFAEMDAICNRLGRGLLTL 60 MS D AATI +AREHSIGDLLRRSA R PGK A+ CG VSW+FAEMDAICNR GRGLL L Sbjct: 1 MSSDTAATISKAREHSIGDLLRRSAGRDPGKLAISCGGVSWTFAEMDAICNRFGRGLLGL 60 Query: 61 GVAKGDRVAVLSRNSHGFAALRFAVARIGAILVPINFMLNPDEINFILANSGAKLLAVGP 120 GV KGDR+AVLSRNSH FAALRFAVARIGA+LVPINFMLNPDEINFIL +SGAKLLA GP Sbjct: 61 GVKKGDRLAVLSRNSHAFAALRFAVARIGAVLVPINFMLNPDEINFILKSSGAKLLATGP 120 Query: 121 DFVETAHAAAAKGSAVETLIWLPGEDPSTAPDGITTFDSLLHSDASAPDVSVDSRDPAQI 180 DFVE A AA+AK AVE +IWLPGEDP+TAP G+TTFD LLH+D S + SVDSRD AQI Sbjct: 121 DFVEPARAASAKDCAVEKMIWLPGEDPATAPAGLTTFDDLLHADGSFLEASVDSRDLAQI 180 Query: 181 IYTSGTESLPKGAILTHEAVMWQYVSCIIDGGMATDDTVLHALPLYHCAQLDVFLGPAIY 240 +YTSGTESLPKGA+LTHEAVMWQYVSCIIDGGM+ DD LHALPLYHCAQLDVFLGP +Y Sbjct: 181 VYTSGTESLPKGAMLTHEAVMWQYVSCIIDGGMSVDDKFLHALPLYHCAQLDVFLGPQVY 240 Query: 241 LGATSLITGKPVPDNVLALIAAHKINSFFAPPTIWIAMLRSGAFDRTDLSTLRKGYYGAS 300 LGA+ +IT KP DN+LALI AH+I SFFAPPTIWIAMLRS FD+TDLSTL+KGYYGAS Sbjct: 241 LGASGVITRKPTADNILALIQAHRITSFFAPPTIWIAMLRSPNFDKTDLSTLQKGYYGAS 300 Query: 301 IMPVEVLLELQRRLPDVKFWNFYGQTEIAPLATVLSPEDQLPKAGSAGKHAINVETRVVR 360 IMPVEVLLELQRRLP VKFWNFYGQTEIAPLATVL PEDQL KAGSAGK +NVETRVV Sbjct: 301 IMPVEVLLELQRRLPAVKFWNFYGQTEIAPLATVLRPEDQLRKAGSAGKPVLNVETRVVN 360 Query: 361 PDMTDVEIGEVGEIVHRSPHLLSGYYNDPVKTAAAFAGGWFHSGDLATVDADGYITVVDR 420 M DV++GEVGEIVHRSPHLLSGYYNDPVKTAAAF+GGWFHSGDLATVD +G+ITVVDR Sbjct: 361 TAMEDVKVGEVGEIVHRSPHLLSGYYNDPVKTAAAFSGGWFHSGDLATVDGEGHITVVDR 420 Query: 421 VKDMIKSGGENVASREVEEMIYRLPSVSEVAVVGLPDPRWIEAVTAIVVVKAGASLDAEA 480 VKDMIK+GGENVASREVEEM+YR+P+VSEVAVVGLPDPRWIEAVTAIVVVK+G +LD E+ Sbjct: 421 VKDMIKTGGENVASREVEEMVYRIPAVSEVAVVGLPDPRWIEAVTAIVVVKSGETLDEES 480 Query: 481 VIKHCAASMAHFKVPKQVIFVDSLPKNPSGKLLKRELRQRYVGGTTLDQAVQKSF 535 VIKHCA MAHFKVPK+VIFVDSLPKNPSGKLLKRELRQR+VGG TLD+A+QK+F Sbjct: 481 VIKHCAGQMAHFKVPKRVIFVDSLPKNPSGKLLKRELRQRFVGGETLDKAIQKNF 535 >ref|YP_001020091.1| acyl-CoA synthetase [Methylibium petroleiphilum PM1] gb|ABM93856.1| putative long-chain-fatty-acid--CoA ligase [Methylibium petroleiphilum PM1] Length = 520 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/508 (65%), Positives = 394/508 (77%), Gaps = 1/508 (0%) Query: 14 EHSIGDLLRRSAKRYPGKTALICGEVSWSFAEMDAICNRLGRGLLTLGVAKGDRVAVLSR 73 ++GDLLRR+ +R+P K A+ CG+ +W++ + D +CNRL GL +A GDRVAVL+R Sbjct: 9 RQTLGDLLRRTRQRHPNKLAIRCGDTAWTYVQFDHVCNRLATGLAAQSIASGDRVAVLAR 68 Query: 74 NSHGFAALRFAVARIGAILVPINFMLNPDEINFILANSGAKLLAVGPDFVETAHAAAAKG 133 NSH FAALRFAVAR+GA+LVPINFML+ DE +IL +SGAKLL E A A+A G Sbjct: 69 NSHAFAALRFAVARLGAVLVPINFMLSADEARYILEHSGAKLLCTDSGLTELARKASA-G 127 Query: 134 SAVETLIWLPGEDPSTAPDGITTFDSLLHSDASAPDVSVDSRDPAQIIYTSGTESLPKGA 193 +AVE L+WLPGEDPS G+T F+ LL P + AQI+YTSGTES PKGA Sbjct: 128 TAVERLVWLPGEDPSEPAAGLTRFEDLLEFGDRVPSPVLHGGMLAQIVYTSGTESRPKGA 187 Query: 194 ILTHEAVMWQYVSCIIDGGMATDDTVLHALPLYHCAQLDVFLGPAIYLGATSLITGKPVP 253 +LTH+AV+ +YVSCI+D ++ D +LHALPLYHCAQLDVFLGPAIY+GAT++ITGKP Sbjct: 188 MLTHDAVIAEYVSCIVDAEISESDLILHALPLYHCAQLDVFLGPAIYIGATNVITGKPTA 247 Query: 254 DNVLALIAAHKINSFFAPPTIWIAMLRSGAFDRTDLSTLRKGYYGASIMPVEVLLELQRR 313 DN+LAL+A I SFFAPPT+WI++LR+ FD TDLS LRKGYYGASIMPVEVL E+QRR Sbjct: 248 DNLLALMARDGITSFFAPPTVWISLLRAPQFDTTDLSALRKGYYGASIMPVEVLKEMQRR 307 Query: 314 LPDVKFWNFYGQTEIAPLATVLSPEDQLPKAGSAGKHAINVETRVVRPDMTDVEIGEVGE 373 LP V+ WN YGQTEIAP+ATVL PEDQL KAGSAG+ +NVETRVV M DV +GE+GE Sbjct: 308 LPKVRLWNLYGQTEIAPVATVLKPEDQLRKAGSAGRATLNVETRVVDDAMRDVAVGEIGE 367 Query: 374 IVHRSPHLLSGYYNDPVKTAAAFAGGWFHSGDLATVDADGYITVVDRVKDMIKSGGENVA 433 IVHRSP LLSGY+ D +T AAF GGWFHSGDL +DA+GY+TVVDR KDMIK+GGENVA Sbjct: 368 IVHRSPQLLSGYFRDEERTRAAFEGGWFHSGDLGVLDAEGYLTVVDRKKDMIKTGGENVA 427 Query: 434 SREVEEMIYRLPSVSEVAVVGLPDPRWIEAVTAIVVVKAGASLDAEAVIKHCAASMAHFK 493 SREVEE IY L VSEVAV+GLP P WIEAVTA++V KAG +L AVI C +A FK Sbjct: 428 SREVEETIYALEGVSEVAVIGLPHPVWIEAVTAVIVPKAGHALTEAAVIAFCDQRLARFK 487 Query: 494 VPKQVIFVDSLPKNPSGKLLKRELRQRY 521 +PK VI D+LPKNPSGKLLKRELR RY Sbjct: 488 IPKTVILTDALPKNPSGKLLKRELRLRY 515 >ref|YP_001243252.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ39346.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. BTAi1] Length = 521 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/511 (65%), Positives = 406/511 (79%) Query: 13 REHSIGDLLRRSAKRYPGKTALICGEVSWSFAEMDAICNRLGRGLLTLGVAKGDRVAVLS 72 R ++GDLLRRSA R PGKTA+ICGE SW++AE +AI +RL GL GV KG+RVA+L+ Sbjct: 6 RRQTLGDLLRRSAARTPGKTAVICGETSWTYAEFNAIVDRLAAGLAARGVVKGERVAILA 65 Query: 73 RNSHGFAALRFAVARIGAILVPINFMLNPDEINFILANSGAKLLAVGPDFVETAHAAAAK 132 RNSH FAALRFA+AR+GA+LVPINFML P+E+ +IL ++GA++LA F A A A Sbjct: 66 RNSHAFAALRFALARLGAVLVPINFMLKPEEVAYILKHAGARMLATDSGFAGVARDAKAL 125 Query: 133 GSAVETLIWLPGEDPSTAPDGITTFDSLLHSDASAPDVSVDSRDPAQIIYTSGTESLPKG 192 AVE LIWLP E PS + F L S A P V + D AQI+YTSGTESLPKG Sbjct: 126 APAVEQLIWLPSEGPSERQTDMIDFADLASSTAQVPAVEIAGSDVAQIVYTSGTESLPKG 185 Query: 193 AILTHEAVMWQYVSCIIDGGMATDDTVLHALPLYHCAQLDVFLGPAIYLGATSLITGKPV 252 A+LTH+AV+WQYVSC++D G+A +D LHALPLYHCAQLDVF GP+IY+GAT++IT P Sbjct: 186 AMLTHDAVIWQYVSCVVDAGIAAEDVTLHALPLYHCAQLDVFFGPSIYVGATNIITAFPT 245 Query: 253 PDNVLALIAAHKINSFFAPPTIWIAMLRSGAFDRTDLSTLRKGYYGASIMPVEVLLELQR 312 PDN+L LIA ++I SFFAPPT+WI++LRS F+ TD+STLRKGYYGASIMPVEVL EL + Sbjct: 246 PDNLLPLIAKYRITSFFAPPTVWISILRSPLFETTDVSTLRKGYYGASIMPVEVLRELAQ 305 Query: 313 RLPDVKFWNFYGQTEIAPLATVLSPEDQLPKAGSAGKHAINVETRVVRPDMTDVEIGEVG 372 RLP V+ WN YGQTEIAPLAT+L PEDQL K GS G+ +NVETRVV DM DV GEVG Sbjct: 306 RLPKVRLWNLYGQTEIAPLATMLGPEDQLRKPGSCGRAVLNVETRVVDDDMNDVAPGEVG 365 Query: 373 EIVHRSPHLLSGYYNDPVKTAAAFAGGWFHSGDLATVDADGYITVVDRVKDMIKSGGENV 432 E+VHRSPHL+ GY++D +TAAAF GGWFHSGDLAT+D +GYIT+VDR KDMIK+GGENV Sbjct: 366 EVVHRSPHLMLGYFHDDERTAAAFQGGWFHSGDLATIDEEGYITIVDRKKDMIKTGGENV 425 Query: 433 ASREVEEMIYRLPSVSEVAVVGLPDPRWIEAVTAIVVVKAGASLDAEAVIKHCAASMAHF 492 ASREVEE +Y +P VSEVAVVGLP PRW+EAV A+VVVK+G L EAV+K +A +A F Sbjct: 426 ASREVEEALYLIPEVSEVAVVGLPHPRWVEAVVAMVVVKSGCDLTEEAVLKQASAKLATF 485 Query: 493 KVPKQVIFVDSLPKNPSGKLLKRELRQRYVG 523 K PK+V+FVD+LPKNPSGKLLKR+LR+ + G Sbjct: 486 KTPKRVVFVDALPKNPSGKLLKRQLREAHAG 516 >ref|YP_001202861.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS 278] emb|CAL74621.1| putative AMP-dependent synthetase and ligase [Bradyrhizobium sp. ORS 278] Length = 521 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/511 (65%), Positives = 406/511 (79%) Query: 13 REHSIGDLLRRSAKRYPGKTALICGEVSWSFAEMDAICNRLGRGLLTLGVAKGDRVAVLS 72 R ++GDLLRRSA R P KTA+ICGE SW++AE +AI +RL GL GVAKG+RVA+L+ Sbjct: 6 RRQTLGDLLRRSAARTPAKTAVICGETSWTYAEFNAIVDRLAAGLAGRGVAKGERVAILA 65 Query: 73 RNSHGFAALRFAVARIGAILVPINFMLNPDEINFILANSGAKLLAVGPDFVETAHAAAAK 132 RNSH FAALRFA+AR+GA+LVPINFML P+E+ +IL ++GA+LLA F TA AA A Sbjct: 66 RNSHAFAALRFALARLGAVLVPINFMLKPEEVAYILKHAGARLLATDSGFAGTARAAKAL 125 Query: 133 GSAVETLIWLPGEDPSTAPDGITTFDSLLHSDASAPDVSVDSRDPAQIIYTSGTESLPKG 192 AVE LIWLP E PS + F L S A P + + D AQI+YTSGTESLPKG Sbjct: 126 APAVEQLIWLPSEGPSERQGDMIDFAVLAASTAPVPSIEIAGSDVAQIVYTSGTESLPKG 185 Query: 193 AILTHEAVMWQYVSCIIDGGMATDDTVLHALPLYHCAQLDVFLGPAIYLGATSLITGKPV 252 A+LTH+AV+WQYVSC++D G+A DD LHALPLYHCAQLDVF GP+IY+GAT++IT P Sbjct: 186 AMLTHDAVIWQYVSCVVDAGIAADDVTLHALPLYHCAQLDVFFGPSIYVGATNIITAFPT 245 Query: 253 PDNVLALIAAHKINSFFAPPTIWIAMLRSGAFDRTDLSTLRKGYYGASIMPVEVLLELQR 312 PDN+L LIA H+I SFFAPPT+WI++LRS F+ TD+STLRKGYYGASIMPVEVL EL + Sbjct: 246 PDNLLPLIATHRITSFFAPPTVWISILRSPLFESTDVSTLRKGYYGASIMPVEVLRELAQ 305 Query: 313 RLPDVKFWNFYGQTEIAPLATVLSPEDQLPKAGSAGKHAINVETRVVRPDMTDVEIGEVG 372 RLP V+ WN YGQTEIAPLAT+L PEDQL K GS G+ +NVETRVV DM DV GEVG Sbjct: 306 RLPKVRLWNLYGQTEIAPLATMLGPEDQLRKPGSCGRAVLNVETRVVDDDMKDVAPGEVG 365 Query: 373 EIVHRSPHLLSGYYNDPVKTAAAFAGGWFHSGDLATVDADGYITVVDRVKDMIKSGGENV 432 E+VHRSPHL+ GY++D +T AAF G WFHSGDLAT+D +GY+T+VDR KDMIK+GGENV Sbjct: 366 EVVHRSPHLMLGYFHDDERTTAAFQGDWFHSGDLATIDEEGYVTIVDRKKDMIKTGGENV 425 Query: 433 ASREVEEMIYRLPSVSEVAVVGLPDPRWIEAVTAIVVVKAGASLDAEAVIKHCAASMAHF 492 ASREVEE +Y++P VSEVAVVGLP PRW+EAV A+VVVK+G L EA++K + +A F Sbjct: 426 ASREVEEALYQIPEVSEVAVVGLPHPRWVEAVVAMVVVKSGCELTEEALLKQASGRLASF 485 Query: 493 KVPKQVIFVDSLPKNPSGKLLKRELRQRYVG 523 K PK+V+FVD+LPKNPSGKLLKR+LR+ + G Sbjct: 486 KTPKRVVFVDALPKNPSGKLLKRQLREAHAG 516 >ref|YP_779783.1| acyl-CoA synthetase [Rhodopseudomonas palustris BisA53] gb|ABJ04803.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] Length = 526 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 305/512 (59%), Positives = 383/512 (74%), Gaps = 2/512 (0%) Query: 12 AREHSIGDLLRRSAKRYPGKTALICGEVSWSFAEMDAICNRLGRGLLTLGVAKGDRVAVL 71 AR +I +LLRRSA+R P KTA+ICG+V+WS+ E D + L RG+++LGV GDRVA+L Sbjct: 6 ARRQTISELLRRSARRMPDKTAVICGDVTWSYREFDQLVETLSRGIVSLGVQVGDRVALL 65 Query: 72 SRNSHGFAALRFAVARIGAILVPINFMLNPDEINFILANSGAKLLAVGPDFVETAHAAAA 131 +RNSH FAA+R+A+AR GA+LVPINFMLN +EI +IL +SGAKLL A AA+ Sbjct: 66 ARNSHAFAAMRYALARAGAVLVPINFMLNAEEIAYILRHSGAKLLCTDSGMAPQAVAASK 125 Query: 132 KGSAVETLIWLPGEDPSTAPDGITTFDSLLHSDASAPDVSVDSRDPA--QIIYTSGTESL 189 ++VE +WLP P+ +G+ SLL A+APD ++ + A QI+YTSGTESL Sbjct: 126 LDTSVEQFVWLPSLRPTEPVEGMIPMQSLLERGANAPDPQIELPNDALAQILYTSGTESL 185 Query: 190 PKGAILTHEAVMWQYVSCIIDGGMATDDTVLHALPLYHCAQLDVFLGPAIYLGATSLITG 249 PKGA+LTH+AV+ QY SC+ D ++HA+P++HCAQLDVF+GP + +GA ++I Sbjct: 186 PKGAMLTHDAVIAQYASCVAACDFKPSDVMVHAMPMFHCAQLDVFVGPFVQVGAMNIIID 245 Query: 250 KPVPDNVLALIAAHKINSFFAPPTIWIAMLRSGAFDRTDLSTLRKGYYGASIMPVEVLLE 309 PVP+ V +I + + + FAPPT+WI++LRS AFD L TL K YYGASIMPV VL+E Sbjct: 246 APVPETVFDMIERYAVTALFAPPTVWISLLRSKAFDPARLQTLEKAYYGASIMPVAVLME 305 Query: 310 LQRRLPDVKFWNFYGQTEIAPLATVLSPEDQLPKAGSAGKHAINVETRVVRPDMTDVEIG 369 +Q+RLP V+FWN YGQTEIAP AT+L PEDQ+ KAGSAGK +NVETRVV D ++ G Sbjct: 306 MQQRLPKVRFWNLYGQTEIAPTATMLGPEDQIRKAGSAGKPVLNVETRVVDDDGRELPPG 365 Query: 370 EVGEIVHRSPHLLSGYYNDPVKTAAAFAGGWFHSGDLATVDADGYITVVDRVKDMIKSGG 429 E+GEIVHRSP L+ GY++D +TA AF GGWFHSGDL D +GY+TVVDR KDMIKSGG Sbjct: 366 EIGEIVHRSPQLMIGYFHDEERTAQAFEGGWFHSGDLGVFDDEGYLTVVDRKKDMIKSGG 425 Query: 430 ENVASREVEEMIYRLPSVSEVAVVGLPDPRWIEAVTAIVVVKAGASLDAEAVIKHCAASM 489 ENVASREVEE IY+L VSEVAV+GL DPRWIEAVTAIVV KAG +L E VI HC A + Sbjct: 426 ENVASREVEETIYQLDGVSEVAVIGLSDPRWIEAVTAIVVPKAGVALTEEQVIAHCKARI 485 Query: 490 AHFKVPKQVIFVDSLPKNPSGKLLKRELRQRY 521 A FK PK+V F D+LP+NPSGK+LKR LRQ Y Sbjct: 486 AGFKSPKRVFFADNLPRNPSGKILKRNLRQAY 517