BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0005.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242028.1| OmpR family two component response transcrip... 320 2e-85 ref|YP_001207569.1| OmpR family two component response transcrip... 317 1e-84 ref|YP_002542281.1| two-component response regulator protein [Ag... 291 5e-77 ref|NP_102946.1| two-component response regulator [Mesorhizobium... 289 2e-76 ref|YP_004612319.1| winged helix family two component transcript... 289 2e-76 >ref|YP_001242028.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38122.1| putative two component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. BTAi1] Length = 255 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 162/233 (69%), Positives = 186/233 (79%), Gaps = 1/233 (0%) Query: 18 RILCVEDDADIARMLAEVLQDNGFRPVLVGSAVEMDALLKRESFDLIVLDVMLPGEDGLS 77 RILCVEDD +IA +L E+LQ++GF P V SA M+ +L+RE DLI+LD+MLP EDG+S Sbjct: 20 RILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMS 79 Query: 78 ICRRLRMSSTIPIIMLTARGEDIDRILGLELGADDYVTKPFNSREVVARIRALLRRVE-S 136 ICRRLR ST+PIIM+TA+GEDIDRILGLELGADDYV KPFN RE+VARIRALLRR + Sbjct: 80 ICRRLRQVSTVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQLH 139 Query: 137 GSVSPSRPRPLTFAGWRINPTTRELHDPAGVRITLTGAEFDLLLTFCRNPGRVLSREQLI 196 +V +R P+TF GWRI P TR L DP V+ITLT AEFD+LL FCRN GRVLSREQLI Sbjct: 140 PAVIAARQAPMTFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQLI 199 Query: 197 EQAFGGLIASVERSVDVHISRIRQKIEPDPKDRSMIKTVRLGGYLFTPAVEQI 249 E A GG VERS+DVHISRIRQKIEP K S+IKTVRLGGY+FTP VE I Sbjct: 200 ELAHGGQAGPVERSIDVHISRIRQKIEPGAKSWSLIKTVRLGGYVFTPRVETI 252 >ref|YP_001207569.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79352.1| putative two component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS 278] Length = 255 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 160/234 (68%), Positives = 185/234 (79%), Gaps = 1/234 (0%) Query: 17 ARILCVEDDADIARMLAEVLQDNGFRPVLVGSAVEMDALLKRESFDLIVLDVMLPGEDGL 76 ARILCVEDD +IA +L E+LQ++GF P V SA M+ +L+RE DLI+LD+MLP EDG+ Sbjct: 19 ARILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGM 78 Query: 77 SICRRLRMSSTIPIIMLTARGEDIDRILGLELGADDYVTKPFNSREVVARIRALLRRVE- 135 SICRRLR S +PIIM+TA+GEDIDRILGLELGADDYV KPFN RE+VARIRALLRR + Sbjct: 79 SICRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQL 138 Query: 136 SGSVSPSRPRPLTFAGWRINPTTRELHDPAGVRITLTGAEFDLLLTFCRNPGRVLSREQL 195 +V +R P+ F GWRI P TR L DP V+ITLT AEFD+LL FCRN GRVLSREQL Sbjct: 139 HPAVIAARQAPMMFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQL 198 Query: 196 IEQAFGGLIASVERSVDVHISRIRQKIEPDPKDRSMIKTVRLGGYLFTPAVEQI 249 IE A GG VERS+DVHISRIRQKIEP + SMIKTVRLGGY+FTP VE + Sbjct: 199 IELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRLGGYVFTPRVETL 252 >ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter K84] gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 240 Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/232 (61%), Positives = 169/232 (72%) Query: 18 RILCVEDDADIARMLAEVLQDNGFRPVLVGSAVEMDALLKRESFDLIVLDVMLPGEDGLS 77 IL VEDD DIA ML E+++ NGF S EMD LL R FDLIVLD MLPGEDG S Sbjct: 8 HILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLPGEDGFS 67 Query: 78 ICRRLRMSSTIPIIMLTARGEDIDRILGLELGADDYVTKPFNSREVVARIRALLRRVESG 137 ICRRLR S +IPI+MLTA ED+DRILGLELGADDYVTKPFNSRE++ARI+++LRR Sbjct: 68 ICRRLRSSRSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRASFS 127 Query: 138 SVSPSRPRPLTFAGWRINPTTRELHDPAGVRITLTGAEFDLLLTFCRNPGRVLSREQLIE 197 P+TFAGWRI+P +R+L D G +++T AEFDLL FC NP +VL+REQL+ Sbjct: 128 QQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLTREQLLS 187 Query: 198 QAFGGLIASVERSVDVHISRIRQKIEPDPKDRSMIKTVRLGGYLFTPAVEQI 249 G VERS+D HISR+RQKIEP+ KD + IKTVRLGGYLF VE++ Sbjct: 188 MTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVERL 239 >ref|NP_102946.1| two-component response regulator [Mesorhizobium loti MAFF303099] dbj|BAB48732.1| probable two-component response regulator [Mesorhizobium loti MAFF303099] Length = 255 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 139/231 (60%), Positives = 171/231 (74%) Query: 18 RILCVEDDADIARMLAEVLQDNGFRPVLVGSAVEMDALLKRESFDLIVLDVMLPGEDGLS 77 IL VEDD +IARML E L +NG + G+ M+A L+ + FDLIVLD+MLPGE+GLS Sbjct: 24 HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83 Query: 78 ICRRLRMSSTIPIIMLTARGEDIDRILGLELGADDYVTKPFNSREVVARIRALLRRVESG 137 ICRRLR + +PI+MLTA GE+IDRI GLE+GADDYVTKPF++RE+ ARIRALLRR Sbjct: 84 ICRRLRAHTNVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYA 143 Query: 138 SVSPSRPRPLTFAGWRINPTTRELHDPAGVRITLTGAEFDLLLTFCRNPGRVLSREQLIE 197 R + L F GWR++P R+LHDP+ R+ T EFDLLL FCRN GRVLSRE+L+ Sbjct: 144 PDERDRTKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNAGRVLSREELLS 203 Query: 198 QAFGGLIASVERSVDVHISRIRQKIEPDPKDRSMIKTVRLGGYLFTPAVEQ 248 GL +ERSVDVH+SRIRQKIE D +D ++KTVRLGGY+FT VE+ Sbjct: 204 VTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLKTVRLGGYIFTATVEE 254 >ref|YP_004612319.1| winged helix family two component transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH88225.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 259 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/236 (58%), Positives = 173/236 (73%) Query: 13 PVTNARILCVEDDADIARMLAEVLQDNGFRPVLVGSAVEMDALLKRESFDLIVLDVMLPG 72 P + +L VEDD +IARML E L +NG + G+ M+A L + FDLIVLD+MLPG Sbjct: 23 PRQGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPG 82 Query: 73 EDGLSICRRLRMSSTIPIIMLTARGEDIDRILGLELGADDYVTKPFNSREVVARIRALLR 132 E+GLSICRRLR + +P++MLTA GE+IDRI GLE+GADDYVTKPF++RE+ ARIRALLR Sbjct: 83 ENGLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLR 142 Query: 133 RVESGSVSPSRPRPLTFAGWRINPTTRELHDPAGVRITLTGAEFDLLLTFCRNPGRVLSR 192 R R + L F GWR++P R+LHDP+ R+ T EFDLLL FCRNPGRVLSR Sbjct: 143 RTAYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLSR 202 Query: 193 EQLIEQAFGGLIASVERSVDVHISRIRQKIEPDPKDRSMIKTVRLGGYLFTPAVEQ 248 E+L+ GL +ERSVDVH+SRIRQKIE D +D +++TVRLGGY+FT VE+ Sbjct: 203 EELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEE 258