BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0168.0004.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207568.1| putative two component sensor histidine kina... 378 e-103 ref|YP_001242027.1| putative two component sensor histidine kina... 377 e-102 ref|YP_002541416.1| two-component sensor histidine kinase protei... 258 2e-66 ref|YP_004612318.1| integral membrane sensor signal transduction... 256 4e-66 ref|NP_102947.1| two-component sensor [Mesorhizobium loti MAFF30... 248 1e-63 >ref|YP_001207568.1| putative two component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL79351.1| putative two component sensor histidine kinase [Bradyrhizobium sp. ORS 278] Length = 461 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/432 (50%), Positives = 281/432 (65%), Gaps = 4/432 (0%) Query: 8 IPR-SVAAQLMSLVALSELIGIMLAAVTIIYLFDSPSITDTQKFLAGRVAELTQLVRSIK 66 +PR + Q+++L +LS L G++L I D P ++ + RVAE VR+ Sbjct: 12 LPRLGLTTQIVTLASLSVLFGMVLMIAAAILFLDPPDEQESPAYGVARVAEAVHFVRAAS 71 Query: 67 TPADADELLAAARRGGLDVRRVALGEL--VPRTTAETRSFSMRAFRQLAAEPGIELMEDL 124 A D L++ R G+ V V L L + + S A RQL+ + L+ + Sbjct: 72 DSAAVDSSLSSLRSSGIQVELVPLASLTLLAKPVQNVPFTSKLARRQLSVLRDVSLLHGV 131 Query: 125 RHPAGSSSQVIVRLDEGHALMADVAVKGGLWSTLLRPVAGGAIILLISMLLLSVYAVRWV 184 + A +Q+IV++D AL+ D + WS +L+P I+LI +LLS YA R + Sbjct: 132 SYGAAPPTQIIVQVDGERALVFDDVPRLEFWSMVLKPTVVFLFIILILGVLLSFYAARAI 191 Query: 185 IAPLAEVARAATSFGRSPRTSKVLRRRGPREIAQVADALNDMRTRIAALLDDRTRMLAAI 244 I PL+E+ARAA +FGRSP + L RRGPREI QVADALNDM+ RI ALLDDRTRMLAAI Sbjct: 192 IRPLSEMARAAAAFGRSPGAQEPLGRRGPREIVQVADALNDMQARIRALLDDRTRMLAAI 251 Query: 245 SHDLRTPLTRLRLRSERVREDALRTAMLGDIAKMTRMINETLEYLREDARTEAASCIDLP 304 SHDLRTPLTRLRLRSER+ + +R+AML DI +++RM++ETL+YLR+D + E + I+L Sbjct: 252 SHDLRTPLTRLRLRSERIGQGDMRSAMLRDIDQVSRMLDETLDYLRDDTKAEQPARIELS 311 Query: 305 SFLQTICSDFADTGHAVSYAGPARLPYVCRPRALSRAVTNVVENAVKHGSLVAVTLRRAE 364 S L+TIC DFAD GHAVSY GP RL RPRALSRAVTNVVENAVKHG+ V V+L Sbjct: 312 SLLETICCDFADVGHAVSYRGPQRLVCEGRPRALSRAVTNVVENAVKHGTEVVVSLDSTA 371 Query: 365 ADHIEIAVADDGPGIPPALRDKVFKPFFKADSARQDSGGFGLGLSIAQDIVKRHGGSIAL 424 I I VADDGPGIP AL+ + +PF K D AR +GGFGLGLSIAQ+I+K+H G IAL Sbjct: 372 DGVIAIEVADDGPGIPQALQARALEPFVKLDQARA-AGGFGLGLSIAQEIMKKHEGGIAL 430 Query: 425 KPGEPSGLLVSM 436 P P GL V + Sbjct: 431 MPNTPRGLRVRL 442 >ref|YP_001242027.1| putative two component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ38121.1| putative two component sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 458 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/445 (49%), Positives = 284/445 (63%), Gaps = 17/445 (3%) Query: 5 QRLIPR-SVAAQLMSLVALSELIGIMLAAVTIIYLFDSPSITDTQKFLAGRVAELTQLVR 63 + PR + Q+++L +LS L G++L + D P ++ + RVAE VR Sbjct: 5 NKTCPRVGLTTQIVTLASLSVLFGVVLMIAAALLFLDPPDEQESPAYGVARVAEAVHFVR 64 Query: 64 SIKTPADADELLAAARRGGLDVRRVALGELVPRTTAETRSFSMR--------AFRQLAAE 115 + D L++ R G+ V ELVP T+ + MR A RQL+ Sbjct: 65 AANDAGAVDSSLSSLRNSGIQV------ELVPLTSLTLLARPMRNVPWTSQLARRQLSVL 118 Query: 116 PGIELMEDLRHPAGSS-SQVIVRLDEGHALMADVAVKGGLWSTLLRPVAGGAIILLISML 174 I L+ + + A +Q+IV++D AL+ D + WS +L+P ++LI + Sbjct: 119 RDITLLHGVSYGAAPPPTQIIVQIDGERALVFDDVPRLEFWSMVLKPTFVFLFLILILGV 178 Query: 175 LLSVYAVRWVIAPLAEVARAATSFGRSPRTSKVLRRRGPREIAQVADALNDMRTRIAALL 234 LLS+YA R +I PL+E+ARAA +FGRSP L RGPREIAQVA+ALNDM+ RI ALL Sbjct: 179 LLSIYAARAIIRPLSEMARAAAAFGRSPAAQAPLSGRGPREIAQVAEALNDMQARIRALL 238 Query: 235 DDRTRMLAAISHDLRTPLTRLRLRSERVREDALRTAMLGDIAKMTRMINETLEYLREDAR 294 DDRTRMLAAISHDLRTPLTRLRLRS+R+ +R AML DI +++RM++ETL+YLR+D + Sbjct: 239 DDRTRMLAAISHDLRTPLTRLRLRSDRIGHGDMRAAMLRDIDQVSRMLDETLDYLRDDTK 298 Query: 295 TEAASCIDLPSFLQTICSDFADTGHAVSYAGPARLPYVCRPRALSRAVTNVVENAVKHGS 354 E + I+L S L+TIC DFAD GHAV+Y GP RL RPRALSRAVTNVVENAVKHGS Sbjct: 299 AEQPARIELSSLLETICCDFADVGHAVTYQGPQRLVCEGRPRALSRAVTNVVENAVKHGS 358 Query: 355 LVAVTLRRAEADHIEIAVADDGPGIPPALRDKVFKPFFKADSARQDSGGFGLGLSIAQDI 414 V V+L A I I VADDGPGIP AL+ + +PF K D AR +GGFGLGLSIAQ+I Sbjct: 359 EVVVSLSVATDGMIAIEVADDGPGIPQALQARALEPFVKLDQARS-AGGFGLGLSIAQEI 417 Query: 415 VKRHGGSIALKPGEPSGLLVSMLLP 439 +K+H G +AL P P GL V + LP Sbjct: 418 MKKHDGGLALMPNAPRGLRVRLSLP 442 >ref|YP_002541416.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gb|ACM29819.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 440 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/274 (47%), Positives = 180/274 (65%), Gaps = 4/274 (1%) Query: 166 AIILLISMLLLSVYAVRWVIAPLAEVARAATSFGRSPRTSKVLRRRGPREIAQVADALND 225 A+I+LI+ ++A+R V P+ ++ AA +S++ RG EI +A ALN Sbjct: 167 AVIVLIAFFF--IFAIRAVTEPIKRISEAAMD-SDINNSSQIFAERGTVEIVSLARALNG 223 Query: 226 MRTRIAALLDDRTRMLAAISHDLRTPLTRLRLRSERVREDALRTAMLGDIAKMTRMINET 285 MR RI ++D RTRML ISHD+RTPLTRLRLR+ER+++ ALR A+L DI + ++ E+ Sbjct: 224 MRNRIRLMVDGRTRMLRGISHDVRTPLTRLRLRTERMQDGALREALLVDIDHIDSLLAES 283 Query: 286 LEYLREDARTEAASCIDLPSFLQTICSDFADTGHAVSYAGPARLPYVCRPRALSRAVTNV 345 L YLR++ TE +D+ S LQT+CSDF+D G V Y GP + CRP +++RAVTN+ Sbjct: 284 LNYLRDEYATEEVERVDVASILQTVCSDFSDVGFEVKYEGPNKFIANCRPLSITRAVTNL 343 Query: 346 VENAVKHGSLVAVTLRRAEADHIEIAVADDGPGIPPALRDKVFKPFFKADSARQDSGGFG 405 +NAVK + V V L+R EA I+V DDGPGI LR+KVF+PFFK D +R GFG Sbjct: 344 CDNAVKFATTVTVQLQRNEAG-FSISVTDDGPGISEDLREKVFEPFFKGDQSRNVQTGFG 402 Query: 406 LGLSIAQDIVKRHGGSIALKPGEPSGLLVSMLLP 439 LGLSI DI H GS+ L P +P GL+V +++P Sbjct: 403 LGLSIVADIAHSHHGSVTLLPHQPHGLIVRIMVP 436 >ref|YP_004612318.1| integral membrane sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gb|AEH88224.1| integral membrane sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 441 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 254/448 (56%), Gaps = 31/448 (6%) Query: 4 AQRLIPRSVAAQLMSLVALSELIGIMLAAVTIIYL--FDSPSITDTQKFLAGRVAELTQL 61 A+R +P+SV Q +++ + ++ + + +V ++ D P + D ++ R A + L Sbjct: 5 ARRFLPQSVRGQFAAIIFTAVIVIMSVGSVVEGWIENVDLPVVEDCER----RAAIVAAL 60 Query: 62 VRSIKTPADA-DELLAAARRGGLDVRRVALGELVPRTTAETRSFSMRAFRQLAAEPGIE- 119 +R +TP++A LLA A R G D + ++P+ T FS R + I+ Sbjct: 61 LR--ETPSEARGALLATATRAGFDFK------ILPKEQTHTIPFSYLQSRSIEWLFVIDR 112 Query: 120 -LMEDLRHPAGSSSQVIVRLDE----GHALMADVAVKGGLWSTLL-RPVAGGAIILLISM 173 +++ G +V LD+ H M D + G L R +A A+ +LI + Sbjct: 113 GMVDGHWTRIGGQYAYVVDLDQQSVLAHFGMPDCWLTSGFVRALFYRFMAFVALPVLIWL 172 Query: 174 LLLSVYAVRWVIAPLAEVARAATSFGRSPRTSKVLRRRGPREIAQVADALNDMRTRIAAL 233 +AV V PL ++ AA +++ RG E+ +A ALN MRTRI + Sbjct: 173 -----FAVWAVTDPLKRIS-AAVGEAEIENGNELFAERGSIEMVGLARALNTMRTRIRTM 226 Query: 234 LDDRTRMLAAISHDLRTPLTRLRLRSERVREDALRTAMLGDIAKMTRMINETLEYLREDA 293 +++RTRML ++SHDLRTPLTRLRLR+ER+ + ++RTA+L D+ + +I+ETL YLR D Sbjct: 227 IENRTRMLRSVSHDLRTPLTRLRLRAERMDDGSVRTAILSDVQHIEDLIDETLIYLRNDV 286 Query: 294 RTEAASCIDLPSFLQTICSDFADTGHAVSYAGPARLPYVCRPRALSRAVTNVVENAVKHG 353 TE D+ S LQT+C++F+D G +V+Y+GP RL C+P AL+RA+TN+ +N VK Sbjct: 287 STEKLQRADIASVLQTVCAEFSDVGFSVTYSGPDRLLGWCKPNALARAITNLCDNGVKFA 346 Query: 354 SLVAVTLRRAEADHIEIAVADDGPGIPPALRDKVFKPFFKADSAR--QDSGGFGLGLSIA 411 V V L +A+ IAV DDGPGI R VF+PFFK D +R GFGLGLSI Sbjct: 347 GNVTVALTQADT-AARIAVGDDGPGISMTARSSVFEPFFKEDMSRGVASKHGFGLGLSIV 405 Query: 412 QDIVKRHGGSIALKPGEPSGLLVSMLLP 439 DI++ HGG I L EP+GL+V++ LP Sbjct: 406 ADIIQGHGGKIELHDNEPNGLVVTIDLP 433 >ref|NP_102947.1| two-component sensor [Mesorhizobium loti MAFF303099] dbj|BAB48733.1| probable two-component sensor [Mesorhizobium loti MAFF303099] Length = 441 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 246/446 (55%), Gaps = 25/446 (5%) Query: 6 RLIPRSVAAQLMSLVALSELIGIMLAAVTIIYLFDS---PSITDTQKFLAGRVAELTQLV 62 R +P+SV Q +++ ++ +I IM A + L D+ P + D+ + Sbjct: 7 RFLPQSVRGQFAAIIFMA-VIAIMSAGSVVEGLIDNVDLPVVDDSAR------RAAVVAA 59 Query: 63 RSIKTPADA-DELLAAARRGGLDVRRVALGELVPRTTAETRSFSMRAFRQLAAEPGIEL- 120 +TP +A +LAAA R G D + ++PR T S +R + IE Sbjct: 60 LLRETPTEARGAVLAAATRAGFDFK------ILPRELVSTIPDSYLQWRSITWLLQIESS 113 Query: 121 -MEDLRHPAGSSSQVIVRLDEGHALMADVAVKGGLWSTLLRPVAGGAIILLISM-LLLSV 178 + G ++ LD+ +++A + ++ V+ + +++ +LL + Sbjct: 114 SIAGRWIRIGGQYAFVIDLDQ-QSVLAHFGMPDSWLTSGFVRVSFYRFMAFVALPVLLWL 172 Query: 179 YAVRWVIAPLAEVARAATSFGRSPRTSKVLRRRGPREIAQVADALNDMRTRIAALLDDRT 238 +AV V PL ++ A +++ RG E+ +A ALN MRTRI ++++RT Sbjct: 173 FAVWAVTEPLKRISNAVGE-AEIENGNELFAERGSIEMVGLARALNRMRTRIRTMIENRT 231 Query: 239 RMLAAISHDLRTPLTRLRLRSERVREDALRTAMLGDIAKMTRMINETLEYLREDARTEAA 298 RML ++SHDLRTPLTRLRLR+ER+ + +RTA+L D+ + +I+ETL YLR D TE Sbjct: 232 RMLRSVSHDLRTPLTRLRLRAERMDDGPVRTAILSDVRHIEDLIDETLTYLRNDVSTEKL 291 Query: 299 SCIDLPSFLQTICSDFADTGHAVSYAGPARLPYVCRPRALSRAVTNVVENAVKHGSLVAV 358 D+ S LQT+C++F+D G +VSY+GP RL C+P AL+RA+TN+ +N VK V V Sbjct: 292 QRADIASVLQTVCAEFSDVGFSVSYSGPDRLLGWCKPNALARAITNLCDNGVKFAGNVTV 351 Query: 359 TLRRAEADHIEIAVADDGPGIPPALRDKVFKPFFKADSAR--QDSGGFGLGLSIAQDIVK 416 L + + IAV DDGPGI R +VF+PFFK D +R GFGLGLSI DI++ Sbjct: 352 ALMQTDT-AARIAVGDDGPGISMTARSRVFEPFFKEDMSRGVASKHGFGLGLSIVADIIQ 410 Query: 417 RHGGSIALKPGEPSGLLVSMLLPPTP 442 HGG I L +PSGL+VS+ LP P Sbjct: 411 GHGGKIELHDNQPSGLVVSVDLPNGP 436