BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0168.0002.p         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772056.1| transcription antitermination protein NusG [Bra...   347   6e-94
ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomona...   344   3e-93
ref|YP_485892.1| transcription antitermination protein NusG [Rho...   344   3e-93
ref|ZP_08630418.1| transcription antitermination protein NusG [B...   343   4e-93
ref|YP_533332.1| transcription antitermination protein NusG [Rho...   343   5e-93

>ref|NP_772056.1| transcription antitermination protein NusG [Bradyrhizobium
           japonicum USDA 110]
 dbj|BAC50681.1| transcription antitermination protein [Bradyrhizobium japonicum
           USDA 110]
          Length = 184

 Score =  347 bits (889), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 173/174 (99%)

Query: 3   KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKFFP 62
           KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFE VLVPTEKVTEVRRGRKIDAERKFFP
Sbjct: 11  KRWYIVHAYSNFEKKVAESIREQAKQRGLEELFELVLVPTEKVTEVRRGRKIDAERKFFP 70

Query: 63  GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS 122
           GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS
Sbjct: 71  GYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVS 130

Query: 123 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV
Sbjct: 131 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 184


>ref|YP_004108488.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
 gb|ADU43755.1| NusG antitermination factor [Rhodopseudomonas palustris DX-1]
          Length = 176

 Score =  344 bits (883), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/176 (96%), Positives = 173/176 (98%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAESIREQAKQRGLE+LFEQVLVPTEKVTEVRRGRK+DAERKF
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLVKM LTDEAFHLIKNTPKVTGFLGAENKPMPISE+EAMRILHQVQEGVERPKAS
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKAS 120

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>ref|YP_485892.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris HaA2]
 gb|ABD06981.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris HaA2]
          Length = 176

 Score =  344 bits (883), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/176 (96%), Positives = 173/176 (98%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKV+ESIREQAKQRGLE+LFEQVLVPTEKVTEVRRGRK+DAERKF
Sbjct: 1   MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLVKM LTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS
Sbjct: 61  FPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176


>ref|ZP_08630418.1| transcription antitermination protein NusG [Bradyrhizobiaceae
           bacterium SG-6C]
 gb|EGP06797.1| transcription antitermination protein NusG [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 176

 Score =  343 bits (881), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 171/173 (98%), Positives = 172/173 (99%)

Query: 4   RWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKFFPG 63
           RWYIVHAYSNFEKKVAESIREQAKQRGLE+LFEQVLVPTEKVTEVRRGRKIDAERKFFPG
Sbjct: 2   RWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKFFPG 61

Query: 64  YVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVSF 123
           YVLVKM LTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVSF
Sbjct: 62  YVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKASVSF 121

Query: 124 EIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           EIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV
Sbjct: 122 EIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 174


>ref|YP_533332.1| transcription antitermination protein NusG [Rhodopseudomonas
           palustris BisB18]
 gb|ABD89013.1| transcription antitermination protein nusG [Rhodopseudomonas
           palustris BisB18]
          Length = 176

 Score =  343 bits (880), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 171/176 (97%), Positives = 172/176 (97%)

Query: 1   MDKRWYIVHAYSNFEKKVAESIREQAKQRGLEELFEQVLVPTEKVTEVRRGRKIDAERKF 60
           M  RWYIVHAYSNFEKKVAESIREQAKQRGLE+LFEQVLVPTEKVTEVRRGRKIDAERKF
Sbjct: 1   MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRRGRKIDAERKF 60

Query: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEAEAMRILHQVQEGVERPKAS 120
           FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISE EAMRILHQVQEGVERPKAS
Sbjct: 61  FPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISEPEAMRILHQVQEGVERPKAS 120

Query: 121 VSFEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELEFGQVEKV 176
           VSFEIGENVRVADGPFASFSGVVEEIDE RSRVKVAVSIFGRATPVELEFGQVEKV
Sbjct: 121 VSFEIGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVEKV 176