BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0167.0022.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772192.1| hypothetical protein bll5552 [Bradyrhizobium ja... 339 2e-91 ref|YP_001241112.1| hypothetical protein BBta_5215 [Bradyrhizobi... 326 1e-87 ref|YP_532990.1| rhomboid-like protein [Rhodopseudomonas palustr... 309 3e-82 ref|YP_004108308.1| Rhomboid family protein [Rhodopseudomonas pa... 306 1e-81 ref|YP_576926.1| rhomboid-like protein [Nitrobacter hamburgensis... 298 4e-79 >ref|NP_772192.1| hypothetical protein bll5552 [Bradyrhizobium japonicum USDA 110] dbj|BAC50817.1| bll5552 [Bradyrhizobium japonicum USDA 110] Length = 432 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 181/266 (68%), Positives = 201/266 (75%), Gaps = 30/266 (11%) Query: 2 DSHPESPLAPP--PEAPREQILTLPPALTAYILLIAAIHLRVLLPPELENWTIDVFGFIP 59 DSH P P APRE ILTLP ALTAYI+L+A IHLRVLLPPELENWTIDVFGFIP Sbjct: 167 DSHDAQPDVPALVEAAPREPILTLPFALTAYIVLLALIHLRVLLPPELENWTIDVFGFIP 226 Query: 60 KRYDSTLLDITFPGGEGAKVWTFVTYSLLHANLTHIGFNVLWL---GSHL---------- 106 KRYDS+LL++ PGG GAKVW+FVTYSLLHANLTH+GFNVLWL GS L Sbjct: 227 KRYDSSLLNLQIPGGAGAKVWSFVTYSLLHANLTHLGFNVLWLLPFGSALARRFGAIRFF 286 Query: 107 ---------------LTHEHAIAPMIGASASVSGTMAAAIRFAFVKGSFLSFSRGDAEAA 151 THEHA+APMIGASASVSG MAAAIRFAFV+GSFLSFSR DA+ A Sbjct: 287 LFLAVTAAAGALAHLATHEHAVAPMIGASASVSGAMAAAIRFAFVRGSFLSFSRSDADTA 346 Query: 152 ARVPALSLWRALRNGRVLAFLAIWFGVNILFGATSLSLGGEGASVAWQAHIGGFLAGLLL 211 A+VPAL L RALR+GRV+ FLA+WFGVNI+FG ++ + E SVAWQAHIGGF AGLLL Sbjct: 347 AKVPALPLSRALRDGRVVGFLAVWFGVNIIFGVGAIGVDAETTSVAWQAHIGGFFAGLLL 406 Query: 212 FSLFDPVPRTRDDAADASSVDQSGRV 237 F+LFDPVPR R DAADASS D S R+ Sbjct: 407 FALFDPVPRVRSDAADASSQDVSDRI 432 >ref|YP_001241112.1| hypothetical protein BBta_5215 [Bradyrhizobium sp. BTAi1] gb|ABQ37206.1| putative membrane protein of unknown function with Rhomboid-like family domain [Bradyrhizobium sp. BTAi1] Length = 264 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/264 (68%), Positives = 198/264 (75%), Gaps = 28/264 (10%) Query: 1 LDSHPESPLAPPPEAPREQILTLPPALTAYILLIAAIHLRVLLPPELENWTIDVFGFIPK 60 +DS + P PP PRE IL LP ALTAYI+LIAAIHLRVLLP + + ID+F F+PK Sbjct: 1 MDSPSDLPQDPPLATPREPILNLPGALTAYIVLIAAIHLRVLLPEDWDTLIIDLFAFVPK 60 Query: 61 RYDSTLLDITFPGGEGAKVWTFVTYSLLHANLTHIGFNVLWL---GSHL----------- 106 RYD TL+D FPGG AKVWTFVTYSLLHANLTHIGFNVLWL GS L Sbjct: 61 RYDPTLMDGAFPGGTPAKVWTFVTYSLLHANLTHIGFNVLWLLPFGSALARRFGAFRFYL 120 Query: 107 --------------LTHEHAIAPMIGASASVSGTMAAAIRFAFVKGSFLSFSRGDAEAAA 152 LTHEHA+APMIGASASVSGTMAAA+RFAFVKGSFLSFSRGDA+ AA Sbjct: 121 FMAVTAAAGALAHLLTHEHALAPMIGASASVSGTMAAAMRFAFVKGSFLSFSRGDADVAA 180 Query: 153 RVPALSLWRALRNGRVLAFLAIWFGVNILFGATSLSLGGEGASVAWQAHIGGFLAGLLLF 212 RVPALSL RALRN RVLAFLAIWFGVNI+FGA LS+G EGA+VAWQAHIGGF+AGL+LF Sbjct: 181 RVPALSLSRALRNPRVLAFLAIWFGVNIVFGAGGLSIGAEGANVAWQAHIGGFVAGLILF 240 Query: 213 SLFDPVPRTRDDAADASSVDQSGR 236 +LFDP+P RDDAA A D R Sbjct: 241 ALFDPIPHVRDDAAPALPSDVIDR 264 >ref|YP_532990.1| rhomboid-like protein [Rhodopseudomonas palustris BisB18] gb|ABD88671.1| Rhomboid-like protein [Rhodopseudomonas palustris BisB18] Length = 276 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 165/243 (67%), Positives = 184/243 (75%), Gaps = 28/243 (11%) Query: 14 EAPREQILTLPPALTAYILLIAAIHLRVLLPPELENWTIDVFGFIPKRYDSTLLDITFPG 73 + PRE ILTLP ALTAY+ L+A IHLRVLLPP+LE WTI++FGFIP RYDSTLL FPG Sbjct: 30 DPPREPILTLPGALTAYVALLAVIHLRVLLPPDLEYWTIEMFGFIPMRYDSTLLATPFPG 89 Query: 74 GEGAKVWTFVTYSLLHANLTHIGFNVLWL---GS-------------------------H 105 G AK+W+FVTYSLLHANL+HI FNVLWL GS H Sbjct: 90 GTAAKIWSFVTYSLLHANLSHILFNVLWLLPFGSALARRFGAVRFFVFMAVTAIAGALAH 149 Query: 106 LLTHEHAIAPMIGASASVSGTMAAAIRFAFVKGSFLSFSRGDAEAAARVPALSLWRALRN 165 L+THEHA+APMIGASASVSG MAAAIRFAFV+GSFLSF RGDAE AA VPA L RALR+ Sbjct: 150 LVTHEHAMAPMIGASASVSGAMAAAIRFAFVQGSFLSFRRGDAETAALVPAQPLSRALRD 209 Query: 166 GRVLAFLAIWFGVNILFGATSLSLGGEGASVAWQAHIGGFLAGLLLFSLFDPVPRTRDDA 225 RVL FLAIWFG+NI+FG S+++G EGASVAWQAHIGGF AGLLLF+LFDPVPR R A Sbjct: 210 PRVLGFLAIWFGINIVFGVGSIAIGAEGASVAWQAHIGGFFAGLLLFALFDPVPRARPGA 269 Query: 226 ADA 228 A Sbjct: 270 DGA 272 >ref|YP_004108308.1| Rhomboid family protein [Rhodopseudomonas palustris DX-1] gb|ADU43575.1| Rhomboid family protein [Rhodopseudomonas palustris DX-1] Length = 254 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 161/241 (66%), Positives = 181/241 (75%), Gaps = 28/241 (11%) Query: 12 PPEAPREQILTLPPALTAYILLIAAIHLRVLLPPELENWTIDVFGFIPKRYDSTLLDITF 71 PP+ PRE ILTLP A+T Y+ L+A IHLR L+ P+ E WTI+VFGFIP RYD TLLD F Sbjct: 11 PPQPPREPILTLPAAVTGYVALLAVIHLRTLVSPDFEYWTIEVFGFIPMRYDQTLLDSPF 70 Query: 72 PGGEGAKVWTFVTYSLLHANLTHIGFNVLWL---GS------------------------ 104 PGG GAK+WTFV+YSLLHANL+H+ FNVLWL GS Sbjct: 71 PGGTGAKLWTFVSYSLLHANLSHLLFNVLWLLPFGSALARRFGAARFYVFMAVTGAAGAF 130 Query: 105 -HLLTHEHAIAPMIGASASVSGTMAAAIRFAFVKGSFLSFSRGDAEAAARVPALSLWRAL 163 HLLTH H IAPMIGASASVSG MAAAIRFAFV+GSFLS RGDA+AAARVPA L RAL Sbjct: 131 AHLLTHPHEIAPMIGASASVSGAMAAAIRFAFVRGSFLSLRRGDADAAARVPAQPLMRAL 190 Query: 164 RNGRVLAFLAIWFGVNILFGATSLSLGGEGASVAWQAHIGGFLAGLLLFSLFDPVPRTRD 223 R+ RVLAFL IWFG+NI+FG S+++G EGASVAWQAHIGGF AGLLLFSLFDPVPRT + Sbjct: 191 RDPRVLAFLGIWFGINIIFGIGSIAIGNEGASVAWQAHIGGFFAGLLLFSLFDPVPRTPE 250 Query: 224 D 224 Sbjct: 251 S 251 >ref|YP_576926.1| rhomboid-like protein [Nitrobacter hamburgensis X14] gb|ABE62466.1| Rhomboid-like protein [Nitrobacter hamburgensis X14] Length = 262 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 164/240 (68%), Positives = 184/240 (76%), Gaps = 29/240 (12%) Query: 20 ILTLPPALTAYILLIAAIHLR-VLLPPELENWTIDVFGFIPKRYDSTLLDITFPGGEGAK 78 ILTLP ALTAYI L+A +H+ LPP+LE WTI+ FGFIPKRYD +LL TFPGG GAK Sbjct: 16 ILTLPGALTAYIGLLAIVHVVWSALPPDLEYWTIETFGFIPKRYDPSLLTATFPGGGGAK 75 Query: 79 VWTFVTYSLLHANLTHIGFNVLWL---GS-------------------------HLLTHE 110 VWTFVTYSLLHANL+HIGFNVLWL GS HL+THE Sbjct: 76 VWTFVTYSLLHANLSHIGFNVLWLLPFGSAVARRFGAFRFFLFMAVTAVAGAAAHLVTHE 135 Query: 111 HAIAPMIGASASVSGTMAAAIRFAFVKGSFLSFSRGDAEAAARVPALSLWRALRNGRVLA 170 H+IAPMIGASASVSG MAAAIRFAFV+GSFLSF DA+AAA+VPALSL RAL+N RVLA Sbjct: 136 HSIAPMIGASASVSGAMAAAIRFAFVRGSFLSFRGNDADAAAQVPALSLMRALQNPRVLA 195 Query: 171 FLAIWFGVNILFGATSLSLGGEGASVAWQAHIGGFLAGLLLFSLFDPVPRTRDDAADASS 230 FLAIWFG+NI+FG S+++G E SVAWQAHIGGF+AGL+LFSLFDPVPR DAA ASS Sbjct: 196 FLAIWFGINIIFGMGSVAVGAESGSVAWQAHIGGFMAGLVLFSLFDPVPRPPRDAASASS 255