BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0018.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774551.1| hypothetical protein bll7911 [Bradyrhizobium ja...   236   1e-60
ref|NP_772152.1| hypothetical protein blr5512 [Bradyrhizobium ja...   184   4e-45
ref|ZP_08630454.1| hypothetical protein CSIRO_3563 [Bradyrhizobi...   184   7e-45
ref|YP_781280.1| TPR repeat-containing protein [Rhodopseudomonas...   182   2e-44
ref|YP_570362.1| TPR repeat-containing protein [Rhodopseudomonas...   179   3e-43

>ref|NP_774551.1| hypothetical protein bll7911 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53176.1| bll7911 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 130/163 (79%), Gaps = 2/163 (1%)

Query: 38  DPYGSSYG--TPAPSYPQQKDRKTTHKIKKPVKQSGLEDPAFRDGYRAAYATIYERNDYA 95
           DPY  +Y    P P+YP++   K T K KK   QS + DPAF  GYR AY TIYERNDYA
Sbjct: 42  DPYAGAYSDQKPQPTYPKRPGTKATQKGKKQGNQSSIGDPAFAAGYRVAYDTIYERNDYA 101

Query: 96  AAIDQLHALGRDDHPDIANLIGYSYRKLGDYKQSQVWYERALKADPNHVLTWNYYGLWQI 155
            AI QL +LG DDHP++ANLIGYSYRKLGDY+QSQVWYERAL+ADPNHV TW YYGLWQ+
Sbjct: 102 TAIAQLKSLGHDDHPNVANLIGYSYRKLGDYEQSQVWYERALRADPNHVQTWQYYGLWQL 161

Query: 156 EQGNRDQAQYHLLRIAEICGIDCEEYRTLAAALEKPTGTNLVY 198
           E+GNR+QA YHL RIA ICG DC+EYR+LAAAL+KP+GT LVY
Sbjct: 162 ERGNREQALYHLGRIASICGTDCDEYRSLAAALDKPSGTALVY 204


>ref|NP_772152.1| hypothetical protein blr5512 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50777.1| blr5512 [Bradyrhizobium japonicum USDA 110]
          Length = 180

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 111/154 (72%), Gaps = 3/154 (1%)

Query: 45  GTPAPSYPQQKDRKTTHKIKKPVKQSGLEDPAFRDGYRAAYATIYERNDYAAAIDQLHAL 104
           G+  PS P + D   T   K   K S + DP F   YR AY TIY+ +DY  AIDQL +L
Sbjct: 30  GSDEPSSPPKSD---TSTKKGKKKSSSVSDPKFLAAYRTAYTTIYDNHDYTGAIDQLKSL 86

Query: 105 GRDDHPDIANLIGYSYRKLGDYKQSQVWYERALKADPNHVLTWNYYGLWQIEQGNRDQAQ 164
            RD+  D+ANLIGYSYRKLGDY+ S+V+YE ALK DPNHV TW YYGLWQ+EQGNR+QAQ
Sbjct: 87  KRDEVADVANLIGYSYRKLGDYQSSKVYYELALKDDPNHVRTWQYYGLWQLEQGNREQAQ 146

Query: 165 YHLLRIAEICGIDCEEYRTLAAALEKPTGTNLVY 198
           YHL +IA + G D  EYR+LAAAL+KPTG  LVY
Sbjct: 147 YHLNKIASLAGTDSSEYRSLAAALDKPTGATLVY 180


>ref|ZP_08630454.1| hypothetical protein CSIRO_3563 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06833.1| hypothetical protein CSIRO_3563 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 180

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 46  TPAPSYPQQKDRKTTHKIKKPVKQSGLEDPAFRDGYRAAYATIYERNDYAAAIDQLHALG 105
           TP+P  P    +      KK  K+S L+ PAF  GYR+AYATIYER +YAAAIDQL ALG
Sbjct: 32  TPSPP-PASDTKSQPKDKKKGEKKSSLDSPAFLQGYRSAYATIYERGEYAAAIDQLKALG 90

Query: 106 RDDHPDIANLIGYSYRKLGDYKQSQVWYERALKADPNHVLTWNYYGLWQIEQGNRDQAQY 165
           +DD  D+ANLIGYSYRKLG+Y+ + VWYERALKADPNHV TW YYGLWQ+EQGNR+QA++
Sbjct: 91  QDDRADVANLIGYSYRKLGNYQLASVWYERALKADPNHVRTWQYYGLWQVEQGNREQARH 150

Query: 166 HLLRIAEICGIDCEEYRTLAAAL 188
           HL +I  I G D  EY++LAAAL
Sbjct: 151 HLAKIEAIAGRDSSEYQSLAAAL 173


>ref|YP_781280.1| TPR repeat-containing protein [Rhodopseudomonas palustris BisA53]
 gb|ABJ06300.1| Tetratricopeptide TPR_2 repeat protein [Rhodopseudomonas palustris
           BisA53]
          Length = 186

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 103/126 (81%)

Query: 73  EDPAFRDGYRAAYATIYERNDYAAAIDQLHALGRDDHPDIANLIGYSYRKLGDYKQSQVW 132
           +D  F  GYR+AYA IY+R +Y++AIDQL AL  DD  D+ANLIGYSYRKLG+Y+ SQ W
Sbjct: 61  DDDRFIQGYRSAYAAIYDRAEYSSAIDQLKALEADDRADVANLIGYSYRKLGNYQLSQAW 120

Query: 133 YERALKADPNHVLTWNYYGLWQIEQGNRDQAQYHLLRIAEICGIDCEEYRTLAAALEKPT 192
           YERALKADP+HV TW YYGLWQ+EQGNR+QA+YHL RI  +CG DC++YR+LAAALE+P+
Sbjct: 121 YERALKADPDHVRTWQYYGLWQLEQGNREQAEYHLGRIRALCGTDCDDYRSLAAALEQPS 180

Query: 193 GTNLVY 198
            +   Y
Sbjct: 181 SSGPAY 186


>ref|YP_570362.1| TPR repeat-containing protein [Rhodopseudomonas palustris BisB5]
 gb|ABE40461.1| TPR repeat [Rhodopseudomonas palustris BisB5]
          Length = 178

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 96/117 (82%)

Query: 77  FRDGYRAAYATIYERNDYAAAIDQLHALGRDDHPDIANLIGYSYRKLGDYKQSQVWYERA 136
           FRDGYR AYATIYER+DYAAAIDQL ALGRDD+  +A LIGYSYRKLGD K +Q +YERA
Sbjct: 59  FRDGYRTAYATIYERHDYAAAIDQLKALGRDDNASVATLIGYSYRKLGDAKLAQAYYERA 118

Query: 137 LKADPNHVLTWNYYGLWQIEQGNRDQAQYHLLRIAEICGIDCEEYRTLAAALEKPTG 193
           LK DPNHV TW YYGLWQ+EQG+R++AQ HL RIA +CG  CEEY++LA A+    G
Sbjct: 119 LKTDPNHVRTWQYYGLWQVEQGHRERAQVHLDRIAALCGTSCEEYKSLADAIGSGAG 175