BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0167.0004.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771207.1| hypothetical protein blr4567 [Bradyrhizobium ja...   106   1e-21
ref|YP_001205790.1| putative carboxylase, like RuBisCO small sub...    97   6e-19
ref|YP_001240102.1| putative carboxylase, like RuBisCO small sub...    96   1e-18
ref|YP_318115.1| allophanate hydrolase subunit 2 [Nitrobacter wi...    91   7e-17
ref|ZP_01047331.1| allophanate hydrolase subunit 2 [Nitrobacter ...    87   1e-15

>ref|NP_771207.1| hypothetical protein blr4567 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49832.1| blr4567 [Bradyrhizobium japonicum USDA 110]
          Length = 345

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 60/79 (75%)

Query: 1   VITADFGRFAQISAGRPFRFKAVTMAEAQAEAIKFHELLRSLPDCLRGIEDFGLNIEALR 60
           VITAD GR AQ SAG  FRFKAV+MAEAQ EA KF + +RSLPD LR  +   LNIEAL 
Sbjct: 263 VITADVGRLAQTSAGTAFRFKAVSMAEAQDEARKFAQAIRSLPDRLRSADTVALNIEALS 322

Query: 61  DANVAGQAVNAVDVSTWQV 79
           DANVAG AV+AVD  TWQV
Sbjct: 323 DANVAGYAVSAVDAGTWQV 341


>ref|YP_001205790.1| putative carboxylase, like RuBisCO small subunit [Bradyrhizobium
           sp. ORS 278]
 emb|CAL77565.1| putative carboxylase, like RuBisCO, small subunit [Bradyrhizobium
           sp. ORS 278]
          Length = 342

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query: 1   VITADFGRFAQISAGRPFRFKAVTMAEAQAEAIKFHELLRSLPDCLRGIEDFGLNIEALR 60
           VITADFGR AQ  AG PFRF+AV+MAEAQAE  ++ +LLRSLPD +R +     +++AL 
Sbjct: 260 VITADFGRLAQTPAGTPFRFQAVSMAEAQAELRRYRDLLRSLPDRVRELTSSEFDVDALF 319

Query: 61  DANVAGQAVNAVDVSTWQVALP 82
            ANVAG AV+A DV+TW    P
Sbjct: 320 TANVAGHAVSATDVTTWPGVTP 341


>ref|YP_001240102.1| putative carboxylase, like RuBisCO small subunit [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ36196.1| putative carboxylase, like RuBisCO, small subunit [Bradyrhizobium
           sp. BTAi1]
          Length = 349

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 57/77 (74%)

Query: 1   VITADFGRFAQISAGRPFRFKAVTMAEAQAEAIKFHELLRSLPDCLRGIEDFGLNIEALR 60
           VITADFGR AQ  AG PFRFKAV+MAEAQAE  ++ +LLRSLP  +  +     NI+AL 
Sbjct: 262 VITADFGRLAQTPAGTPFRFKAVSMAEAQAELRRYKDLLRSLPGRVTELTSSAFNIDALF 321

Query: 61  DANVAGQAVNAVDVSTW 77
            ANVAG AV+A DV+TW
Sbjct: 322 TANVAGHAVSATDVTTW 338


>ref|YP_318115.1| allophanate hydrolase subunit 2 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04763.1| allophanate hydrolase subunit 2 [Nitrobacter winogradskyi Nb-255]
          Length = 339

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)

Query: 1   VITADFGRFAQISAGRPFRFKAVTMAEAQAEAIKFHELLRSLPDCLRGIEDFGLNIEALR 60
           V+TAD GRFAQI  GR FRFK+VT+AEAQAEA    +LLR+LP  +R + +  ++ +ALR
Sbjct: 262 VMTADLGRFAQIPVGRGFRFKSVTVAEAQAEARAMADLLRTLPGRVRAVRNTDID-DALR 320

Query: 61  DANVAGQAVNAVDVSTWQV 79
           +AN+AG AVNA D  TWQ 
Sbjct: 321 NANIAGTAVNAFDSGTWQT 339


>ref|ZP_01047331.1| allophanate hydrolase subunit 2 [Nitrobacter sp. Nb-311A]
 gb|EAQ34759.1| allophanate hydrolase subunit 2 [Nitrobacter sp. Nb-311A]
          Length = 345

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 1   VITADFGRFAQISAGRPFRFKAVTMAEAQAEAIKFHELLRSLPDCLRGIEDFGLNIEALR 60
           VIT+D GRFAQI  GR FRFKAVT+AEAQ  A    +LLR+LPD +  I +  +N +AL+
Sbjct: 262 VITSDLGRFAQIPVGRSFRFKAVTIAEAQTVARSMADLLRTLPDRVFEIRNANIN-DALQ 320

Query: 61  DANVAGQAVNAVDVSTWQVALP 82
           +AN+ G AVNA D  TWQ   P
Sbjct: 321 NANIGGTAVNAFDSGTWQTWPP 342