BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0166.0016.p (1058 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobiu... 1544 0.0 ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizo... 1519 0.0 ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizo... 1512 0.0 ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomo... 1491 0.0 ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomo... 1489 0.0 >ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110] dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110] Length = 1167 Score = 1544 bits (3998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 764/851 (89%), Positives = 793/851 (93%), Gaps = 17/851 (1%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF-------------LANRLRVHGLSPGMTEEDY 60 RCSFRP TRKPILPFFTVGAAAS+ LANRLRVHGLS G TEEDY Sbjct: 271 RCSFRPMTRKPILPFFTVGAAASSDAAAVEAAELKRQAEEGLANRLRVHGLSQGTTEEDY 330 Query: 61 SKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDLDP 120 SKRLAFELDVI RMKYAGYFLIVSDFIKWAK+QGIPVGPGRGSGAGSLVAW LTITDLDP Sbjct: 331 SKRLAFELDVIMRMKYAGYFLIVSDFIKWAKSQGIPVGPGRGSGAGSLVAWALTITDLDP 390 Query: 121 MRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQARGV 180 ++F LLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQ+RYGRDQVAQIITFGTLQARGV Sbjct: 391 IKFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQQRYGRDQVAQIITFGTLQARGV 450 Query: 181 LRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDIAQ 240 LRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLA AIE EPKLQAFRDEDPVVARAFDIAQ Sbjct: 451 LRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIESEPKLQAFRDEDPVVARAFDIAQ 510 Query: 241 RLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGL 300 RLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGL Sbjct: 511 RLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGL 570 Query: 301 KTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALIDMR 360 KTLTVLDVA KLLK RD+ VDLATLPIDDA SYQMLARG+VVGVFQVESQGMRRAL+DMR Sbjct: 571 KTLTVLDVACKLLKPRDIHVDLATLPIDDAESYQMLARGEVVGVFQVESQGMRRALVDMR 630 Query: 361 PDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQVM 420 PDRFEDIIALVALYRPGPMANIPTYC+RKHGDEE EYLHP+LEPILKETFGVIIYQEQVM Sbjct: 631 PDRFEDIIALVALYRPGPMANIPTYCSRKHGDEEPEYLHPVLEPILKETFGVIIYQEQVM 690 Query: 421 QIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLAKF 480 QIAQ M+GYSLG ADLLRRAMGKKIRAEMDKQRDIFVAGA+KNGV KGQAETIFELLAKF Sbjct: 691 QIAQVMSGYSLGDADLLRRAMGKKIRAEMDKQRDIFVAGAVKNGVPKGQAETIFELLAKF 750 Query: 481 ADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGIKV 540 ADYGFNKSHAAAYALVSYHTAYMKAHYPVEF+AASMTL+LNNTDKLSEFRSEAQRLGIKV Sbjct: 751 ADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKV 810 Query: 541 EAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVSPR 600 E PNINRSGATFEV + TIYYALAALKGVGIQA++QIIEER + G+FTSLADFAARV+PR Sbjct: 811 EPPNINRSGATFEVGEKTIYYALAALKGVGIQAIDQIIEERTKNGLFTSLADFAARVNPR 870 Query: 601 AVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAADAPS 660 A+NKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQR+HEAAT GQNDMFG +ADAP+ Sbjct: 871 AINKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRAHEAATIGQNDMFGMSADAPT 930 Query: 661 IMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAG 720 IMLPQIE WLPA+RLRREYDAIGFFLSGHPLDDYAT LKRLRVQSWAEFSRAVKTGATAG Sbjct: 931 IMLPQIEAWLPAERLRREYDAIGFFLSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAG 990 Query: 721 KVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGA 780 KVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGA Sbjct: 991 KVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQLGA 1050 Query: 781 ELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLNMPEAAPAPGGPAKA 840 ELQGEDVRARVLHAEPLD AAAKTQKGLRIF+RDTK L+SIA+RL PE A + G A Sbjct: 1051 ELQGEDVRARVLHAEPLDDAAAKTQKGLRIFLRDTKALESIAKRLAGPEMASSNGA---A 1107 Query: 841 PAV-KPAAAPR 850 P V P APR Sbjct: 1108 PKVGSPGIAPR 1118 >ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1] gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1] Length = 1173 Score = 1519 bits (3932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 739/829 (89%), Positives = 778/829 (93%), Gaps = 16/829 (1%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF----------------LANRLRVHGLSPGMTE 57 RCS+RP+TRKPILPFFTVGA + A LA RL+VHG++PGMTE Sbjct: 274 RCSYRPRTRKPILPFFTVGAGSGADAVDAASAEAAELKRQAEEGLARRLKVHGMAPGMTE 333 Query: 58 EDYSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITD 117 EDY KRLAFELDVITRMKYAGYFLIVSDFIKWAKA GIPVGPGRGSGAGSLVAWVLTITD Sbjct: 334 EDYQKRLAFELDVITRMKYAGYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITD 393 Query: 118 LDPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQA 177 LDPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVI YVQ+RYGRDQVAQIITFGTLQA Sbjct: 394 LDPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQA 453 Query: 178 RGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFD 237 RGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLA AIEGEPKLQAFRDEDPVVARAFD Sbjct: 454 RGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFD 513 Query: 238 IAQRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDF 297 IA RLEGLTRHASTHAAGIVIGDRPLSELVP+YRDPKSDMPVTQFNMKWVEPAGLVKFDF Sbjct: 514 IAMRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDF 573 Query: 298 LGLKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALI 357 LGLKTLTVLDVAVKLLKQRDV VDLATLPIDDA SYQMLARGDVVGVFQVESQGMRRALI Sbjct: 574 LGLKTLTVLDVAVKLLKQRDVHVDLATLPIDDAASYQMLARGDVVGVFQVESQGMRRALI 633 Query: 358 DMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQE 417 DMRPDRFEDIIALVALYRPGPMANIPTYCARKHG+EE+EYLHPILEPILKETFGVIIYQE Sbjct: 634 DMRPDRFEDIIALVALYRPGPMANIPTYCARKHGEEEAEYLHPILEPILKETFGVIIYQE 693 Query: 418 QVMQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELL 477 QVMQ+AQQM+GYSLG+ADLLRRAMGKKIRAEMDKQR FV GA+KNGV+K QA+TIF+LL Sbjct: 694 QVMQVAQQMSGYSLGEADLLRRAMGKKIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLL 753 Query: 478 AKFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLG 537 AKFADYGFNKSHAAAYALVSYHTAYMKAHYPVEF+AASMTL+LNNTDKLSEFR+EAQRLG Sbjct: 754 AKFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLG 813 Query: 538 IKVEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARV 597 IKVE P+INRSG TFEVS NTI+YALAALKGVG QA+E I+E RN+ G FTSLADFA+RV Sbjct: 814 IKVEPPSINRSGPTFEVSGNTIFYALAALKGVGPQAIEMIVEARNKGGPFTSLADFASRV 873 Query: 598 SPRAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAAD 657 +PRA+NKRIIE+LAAAGAFD L+ NRARVFAGADAI+AACQR+HEAATSGQNDMFG AAD Sbjct: 874 NPRAINKRIIETLAAAGAFDVLDKNRARVFAGADAIVAACQRAHEAATSGQNDMFGNAAD 933 Query: 658 APSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGA 717 AP+I+LP +E WLPA+RLRREYDAIGFFLSGHPLDDYA ALKRLRVQSWAEFSRAVKTGA Sbjct: 934 APAIILPNVENWLPAERLRREYDAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGA 993 Query: 718 TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQ 777 TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQ Sbjct: 994 TAGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQ 1053 Query: 778 LGAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 LGAELQGEDVRARVLHAEPLD AAAKTQ+GLRIF+RDTKPLDSI +RL Sbjct: 1054 LGAELQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKRLQ 1102 >ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS 278] emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS 278] Length = 1174 Score = 1512 bits (3915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 741/828 (89%), Positives = 776/828 (93%), Gaps = 15/828 (1%) Query: 14 RCSFRPKTRKPILPFFTVGA-------AASAXFF--------FLANRLRVHGLSPGMTEE 58 RCS+RP+TRKPILPFFTVGA AASA L RL+VHG++PGMTEE Sbjct: 274 RCSYRPRTRKPILPFFTVGAGTGDTVDAASAEAAELKRQAEEGLERRLKVHGMAPGMTEE 333 Query: 59 DYSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDL 118 DY KRLAFELDVI RMKYAGYFLIVSDFIKWAKA GIPVGPGRGSGAGSLVAWVLTITDL Sbjct: 334 DYQKRLAFELDVIMRMKYAGYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDL 393 Query: 119 DPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQAR 178 DPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVI YVQ+RYGRDQVAQIITFGTLQAR Sbjct: 394 DPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQAR 453 Query: 179 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDI 238 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLA AIEGEPKLQAFRDEDPVVARAFDI Sbjct: 454 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDI 513 Query: 239 AQRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 298 A RLEGLTRHASTHAAGIVIGDRPLSELVP+YRDPKSDMPVTQFNMKWVEPAGLVKFDFL Sbjct: 514 AMRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 573 Query: 299 GLKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALID 358 GLKTLTVLDVAVKLLKQRDV VDLATLPIDDA SYQMLARGDVVGVFQVESQGMRRALID Sbjct: 574 GLKTLTVLDVAVKLLKQRDVHVDLATLPIDDAASYQMLARGDVVGVFQVESQGMRRALID 633 Query: 359 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQ 418 MRPDRFEDIIALVALYRPGPMANIPTYCARKHG+EE EYLHPILEPILKETFGVIIYQEQ Sbjct: 634 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGEEEPEYLHPILEPILKETFGVIIYQEQ 693 Query: 419 VMQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLA 478 VMQ+AQQM+GYSLG+ADLLRRAMGKKIRAEMDKQR FV GA+KNGV K QA+TIF+LLA Sbjct: 694 VMQVAQQMSGYSLGEADLLRRAMGKKIRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLA 753 Query: 479 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGI 538 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEF+AASMTL+LNNTDKLSEFR+EAQRLGI Sbjct: 754 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGI 813 Query: 539 KVEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVS 598 KVE P+INRSG TFEVS NTI+YALAALKGVG QA+E I+E RN+ G FTSLADFA+RVS Sbjct: 814 KVEPPSINRSGPTFEVSGNTIFYALAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVS 873 Query: 599 PRAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAADA 658 PRA+NKRIIE+LAAAGAFD L+ NRARVFAGADAI+AACQR++EAATSGQNDMFG AADA Sbjct: 874 PRAINKRIIETLAAAGAFDCLDKNRARVFAGADAIVAACQRANEAATSGQNDMFGNAADA 933 Query: 659 PSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGAT 718 P+I+LP IE WLPA+RLRREYDAIGFFLSGHPLDDYA ALKRLRVQSWAEFSRAVKTGAT Sbjct: 934 PAIILPNIENWLPAERLRREYDAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGAT 993 Query: 719 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL 778 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL Sbjct: 994 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL 1053 Query: 779 GAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLN 826 GAELQGEDVRARVLHAEPLD AAAKTQ+GLRIF+RDTKPLDSI +RL Sbjct: 1054 GAELQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKRLQ 1101 >ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2] gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 1151 Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 729/840 (86%), Positives = 773/840 (92%), Gaps = 16/840 (1%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF---------------LANRLRVHGLSPGMTEE 58 RC++RP TRKPILP FTVGA+ + LA+R+RVHGLS GMTEE Sbjct: 272 RCAYRPLTRKPILPLFTVGASVNDAEEAAAAEAAELRRQAEQGLADRMRVHGLSQGMTEE 331 Query: 59 DYSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDL 118 DY KRLAFELDVITRMKYAGYFLIVSDFIKWAKA GIPVGPGRGSGAGSLVA+ LTITDL Sbjct: 332 DYQKRLAFELDVITRMKYAGYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDL 391 Query: 119 DPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQAR 178 DP+RF LLFERFLNPERVSMPDFDIDFCQDRRGEVI+YVQ RYGRDQVAQIITFGTLQAR Sbjct: 392 DPIRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQAR 451 Query: 179 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDI 238 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV+L QAIE EPKLQAFRDEDPVVARAFDI Sbjct: 452 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDI 511 Query: 239 AQRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 298 AQ+LEGLTRHASTHAAGIVIGDRPLS+LVP+YRDPKSDMPVTQFNMKWVEPAGLVKFDFL Sbjct: 512 AQKLEGLTRHASTHAAGIVIGDRPLSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 571 Query: 299 GLKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALID 358 GLKTLTVLDVAVKLLKQRD+ +DLATL I+D SYQMLARGDVVGVFQVESQGMRRAL+D Sbjct: 572 GLKTLTVLDVAVKLLKQRDIHIDLATLGIEDPVSYQMLARGDVVGVFQVESQGMRRALVD 631 Query: 359 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQ 418 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHP+LEPILKETFGVIIYQEQ Sbjct: 632 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPMLEPILKETFGVIIYQEQ 691 Query: 419 VMQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLA 478 VMQIAQ MAGYSLG+ADLLRRAMGKKIRAEM+KQR IFV GA KNGV K A+TIF+LLA Sbjct: 692 VMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRAIFVEGATKNGVPKDSADTIFDLLA 751 Query: 479 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGI 538 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEF+AASMTL+LNNTDKLSEFR+EAQRLGI Sbjct: 752 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGI 811 Query: 539 KVEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVS 598 KVEAP++NRSG TFEV NTIYYALA LKGVG+QAV+ I+E R K F SLADFAARV+ Sbjct: 812 KVEAPSVNRSGPTFEVGANTIYYALAGLKGVGLQAVQMIVEARGDKP-FASLADFAARVN 870 Query: 599 PRAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAADA 658 PRA+NKR+IESLAAAGAFD L+ NRARVFAGADAI+AACQRSHEAATSGQNDMFGG ADA Sbjct: 871 PRAINKRVIESLAAAGAFDCLDSNRARVFAGADAIIAACQRSHEAATSGQNDMFGGLADA 930 Query: 659 PSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGAT 718 P ++LPQIEPWLPA+RLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEF +AVK+GAT Sbjct: 931 PQVVLPQIEPWLPAERLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGAT 990 Query: 719 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL 778 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL Sbjct: 991 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL 1050 Query: 779 GAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLNMPEAAPAPGGPA 838 GAELQGEDVRARVLHAEPLD AAAKTQKGLRIF+RDTKPLDSI +RL PE+ + G A Sbjct: 1051 GAELQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKRLQPPESKVSGGNIA 1110 >ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5] gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 1151 Score = 1489 bits (3856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 725/840 (86%), Positives = 777/840 (92%), Gaps = 16/840 (1%) Query: 14 RCSFRPKTRKPILPFFTVGAAASAXFFF---------------LANRLRVHGLSPGMTEE 58 RC++RP TRKPILP FTVGA+ + LA+R+R+HGLS GM+EE Sbjct: 272 RCAYRPLTRKPILPLFTVGASVNDAEEAAAAEAAELRRQAEQGLADRMRIHGLSQGMSEE 331 Query: 59 DYSKRLAFELDVITRMKYAGYFLIVSDFIKWAKAQGIPVGPGRGSGAGSLVAWVLTITDL 118 DY KRLAFELDVITRMKYAGYFLIVSDFIKWAKA GIPVGPGRGSGAGSLVA+ LTITDL Sbjct: 332 DYRKRLAFELDVITRMKYAGYFLIVSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDL 391 Query: 119 DPMRFALLFERFLNPERVSMPDFDIDFCQDRRGEVIQYVQERYGRDQVAQIITFGTLQAR 178 DP+RF LLFERFLNPERVSMPDFDIDFCQDRRGEVI+YVQ+RYGRDQVAQIITFGTLQAR Sbjct: 392 DPIRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQAR 451 Query: 179 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAQAIEGEPKLQAFRDEDPVVARAFDI 238 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPV+L QAIE EPKLQAFRDEDPVVARAFDI Sbjct: 452 GVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDI 511 Query: 239 AQRLEGLTRHASTHAAGIVIGDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 298 AQ+LEGLTRHASTHAAGIVIGDRPLS+LVP+YRDPKSDMPVTQFNMKWVEPAGLVKFDFL Sbjct: 512 AQKLEGLTRHASTHAAGIVIGDRPLSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFL 571 Query: 299 GLKTLTVLDVAVKLLKQRDVDVDLATLPIDDAPSYQMLARGDVVGVFQVESQGMRRALID 358 GLKTLTVLDVAVKLLKQR++ +DLATL I+DAPSYQMLARGDVVGVFQVESQGMRRAL+D Sbjct: 572 GLKTLTVLDVAVKLLKQRNIHIDLATLGIEDAPSYQMLARGDVVGVFQVESQGMRRALVD 631 Query: 359 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEESEYLHPILEPILKETFGVIIYQEQ 418 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEE EYLHP+LEPILKETFGVIIYQEQ Sbjct: 632 MRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQ 691 Query: 419 VMQIAQQMAGYSLGQADLLRRAMGKKIRAEMDKQRDIFVAGAMKNGVAKGQAETIFELLA 478 VMQIAQ MAGYSLG+ADLLRRAMGKKIRAEM+KQR IFV GA +NGV K A+TIF+LLA Sbjct: 692 VMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRAIFVEGATRNGVPKDAADTIFDLLA 751 Query: 479 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFLAASMTLELNNTDKLSEFRSEAQRLGI 538 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEF+AASMTL+LNNTDKLSEFR+EAQRLGI Sbjct: 752 KFADYGFNKSHAAAYALVSYHTAYMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGI 811 Query: 539 KVEAPNINRSGATFEVSDNTIYYALAALKGVGIQAVEQIIEERNRKGVFTSLADFAARVS 598 KVEAP++NRSG TFEV +NTIYYALA LKGVG AV+ I+E R K F+SLADFAARV+ Sbjct: 812 KVEAPSVNRSGPTFEVGENTIYYALAGLKGVGQHAVQMIVEARGDKP-FSSLADFAARVN 870 Query: 599 PRAVNKRIIESLAAAGAFDTLEPNRARVFAGADAILAACQRSHEAATSGQNDMFGGAADA 658 PRA+NKR+IESLAAAGAFD L+PNRARVFAGADAI+AACQRSHEAATSGQNDMFGG ADA Sbjct: 871 PRAINKRVIESLAAAGAFDCLDPNRARVFAGADAIIAACQRSHEAATSGQNDMFGGLADA 930 Query: 659 PSIMLPQIEPWLPADRLRREYDAIGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGAT 718 PSI+LPQ+EPWLPA+RLRREYDAIGFFLSGHPLDDYATALKRLRVQSW++F +AVK+GAT Sbjct: 931 PSIVLPQVEPWLPAERLRREYDAIGFFLSGHPLDDYATALKRLRVQSWSDFCKAVKSGAT 990 Query: 719 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYRDVLEPGAAVLLQL 778 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYR+VLEPGAAVLLQL Sbjct: 991 AGKVAATVVSRMERRTKTGNKMGIMGLSDPTGHFEAVLFSEGLAQYREVLEPGAAVLLQL 1050 Query: 779 GAELQGEDVRARVLHAEPLDHAAAKTQKGLRIFVRDTKPLDSIARRLNMPEAAPAPGGPA 838 GAELQGEDVRARVLHAEPLD AAAKTQKGLRIF+RDTKPLDSI++RL PE A G A Sbjct: 1051 GAELQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKRLQPPETKVAGGNIA 1110