BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0166.0008.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771517.1| prolyl-tRNA synthetase [Bradyrhizobium japonicu... 848 0.0 ref|YP_569994.1| prolyl-tRNA synthetase [Rhodopseudomonas palust... 824 0.0 ref|YP_001992253.1| prolyl-tRNA synthetase [Rhodopseudomonas pal... 824 0.0 ref|NP_948269.1| prolyl-tRNA synthetase [Rhodopseudomonas palust... 823 0.0 pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synth... 822 0.0 >ref|NP_771517.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] sp|Q89KM8.1|SYP_BRAJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA ligase; Short=ProRS dbj|BAC50142.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/439 (92%), Positives = 427/439 (97%) Query: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 MRLSRFFLPILKENPKEAEIVSHRLMLRAGM+RQEAAGIYAWLPLGFRVLKKIEQIVREE Sbjct: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 Query: 61 QDRAGALELLMPTLQLADLWRESGRYDAYGPEMLRILDRHKRELLYGPTNEEMITEIFRS 120 QDR+GALELLMPTLQLADLWRESGRYDAYGPEMLRI DRHKRELLYGPTNEEMITEIFR+ Sbjct: 61 QDRSGALELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120 Query: 121 YIKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRSYNKMFVA 180 Y+KSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDL+EA AR +YNKMFVA Sbjct: 121 YVKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLNEAAARVAYNKMFVA 180 Query: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYINRDVLDLPVPGEDVDYD 240 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGV+INRDVLDLPVPGEDVDY+ Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFINRDVLDLPVPGEDVDYE 240 Query: 241 GDLTPIIKQWTSVYAATEDVHEAARFEREVPEAKRLNTRGIEVGQIFYFGTKYSDTMKAM 300 DLTPIIKQWTSVYAATEDVH+AARFE+EVPEAKRLNTRGIEVGQIFYFGTKYS+ MKAM Sbjct: 241 SDLTPIIKQWTSVYAATEDVHDAARFEQEVPEAKRLNTRGIEVGQIFYFGTKYSEPMKAM 300 Query: 301 VAGPDGVDVPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFRAAILNLKQGDAAV 360 VAGPDGVDVPIHGGSYGVGVSRL+GAIIEACHDDAGIKWPEAVAPFRA +LNLKQGDAAV Sbjct: 301 VAGPDGVDVPIHGGSYGVGVSRLLGAIIEACHDDAGIKWPEAVAPFRAVVLNLKQGDAAV 360 Query: 361 DGACEQLYRELSAKGVDVLYDDTDQRAGAKFAAADLIGIPWQILVGPKGLADGKVEVKRR 420 D ACE+LY EL AKGVDVLYDDTDQRAGAKFAAADLIGIPWQI++GPKGLADGKVE+KRR Sbjct: 361 DAACEKLYAELQAKGVDVLYDDTDQRAGAKFAAADLIGIPWQIMIGPKGLADGKVELKRR 420 Query: 421 SDGSRDNMSPADVVAKLAG 439 SDGSR+ MSPAD VA+L G Sbjct: 421 SDGSRETMSPADAVARLVG 439 >ref|YP_569994.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] sp|Q135Z6.1|SYP_RHOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA ligase; Short=ProRS gb|ABE40093.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 439 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/438 (90%), Positives = 419/438 (95%) Query: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 MRLSRFFLPILKENPKEAEIVSHRLMLRAGM+RQEAAGIYAWLPLG RVLKKIEQIVREE Sbjct: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60 Query: 61 QDRAGALELLMPTLQLADLWRESGRYDAYGPEMLRILDRHKRELLYGPTNEEMITEIFRS 120 Q+RAGA+ELLMPTLQLADLWRESGRYDAYGPEMLRI DRHKRELLYGPTNEEMITEIFR+ Sbjct: 61 QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120 Query: 121 YIKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRSYNKMFVA 180 Y+KSYK+LPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFD+DEA AR+SYN+MFVA Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180 Query: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYINRDVLDLPVPGEDVDYD 240 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVY +RDVL+LPVPGEDVDYD Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLNLPVPGEDVDYD 240 Query: 241 GDLTPIIKQWTSVYAATEDVHEAARFEREVPEAKRLNTRGIEVGQIFYFGTKYSDTMKAM 300 GDLTPII+QWTSVYAATEDVH+AAR+E EVPEA RLNTRGIEVGQIFYFGTKYSD+MKA Sbjct: 241 GDLTPIIQQWTSVYAATEDVHDAARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKAN 300 Query: 301 VAGPDGVDVPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFRAAILNLKQGDAAV 360 VAGPDG D PIHGGSYGVGVSRLVGAIIEACHD+ GIKWPE VAPFR AILNLKQGDA Sbjct: 301 VAGPDGADAPIHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRVAILNLKQGDAQT 360 Query: 361 DGACEQLYRELSAKGVDVLYDDTDQRAGAKFAAADLIGIPWQILVGPKGLADGKVEVKRR 420 D ACEQLYREL+AKGVDVLYDDTDQRAGAKFA ADLIGIPWQ+LVGPKGLADGKVE+KRR Sbjct: 361 DAACEQLYRELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKVELKRR 420 Query: 421 SDGSRDNMSPADVVAKLA 438 SDGSR+ ++ A+ VA+LA Sbjct: 421 SDGSRETIALAEAVARLA 438 >ref|YP_001992253.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] sp|B3Q7L2.1|SYP_RHOPT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA ligase; Short=ProRS gb|ACF01778.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] Length = 438 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/438 (90%), Positives = 418/438 (95%) Query: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 MRLSRFFLPILKENPKEAEIVSHRLMLRAGM+RQEAAGIYAWLPLG RVLKKIEQIVREE Sbjct: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60 Query: 61 QDRAGALELLMPTLQLADLWRESGRYDAYGPEMLRILDRHKRELLYGPTNEEMITEIFRS 120 Q+RAGA+ELLMPTLQLADLWRESGRYDAYGPEMLRI DRHKRELLYGPTNEEMITEIFR+ Sbjct: 61 QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120 Query: 121 YIKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRSYNKMFVA 180 YIKSYK+LPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFD+DEAGAR+SYNKMFVA Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180 Query: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYINRDVLDLPVPGEDVDYD 240 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYI+RDVL+LPVP E+VDYD Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240 Query: 241 GDLTPIIKQWTSVYAATEDVHEAARFEREVPEAKRLNTRGIEVGQIFYFGTKYSDTMKAM 300 GDLTPIIKQWTSVYAATEDVHE AR+E EVPEA RLNTRGIEVGQIFYFGTKYSD+MKA Sbjct: 241 GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKAN 300 Query: 301 VAGPDGVDVPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFRAAILNLKQGDAAV 360 V GPDG D PIHGGSYGVGVSRL+GAIIEACHDD GI WPEAVAPFR ILNLKQGDAA Sbjct: 301 VTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAAT 360 Query: 361 DGACEQLYRELSAKGVDVLYDDTDQRAGAKFAAADLIGIPWQILVGPKGLADGKVEVKRR 420 D AC+QLYRELSAKGVDVLYDDTDQRAGAKFA ADLIGIPWQI VGP+GLA+GKVE+KRR Sbjct: 361 DAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRR 420 Query: 421 SDGSRDNMSPADVVAKLA 438 SDGSR+N++ ADVVA+L Sbjct: 421 SDGSRENLALADVVARLT 438 >ref|NP_948269.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] sp|Q6N5P6.1|SYP_RHOPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA ligase; Short=ProRS emb|CAE28369.1| proline-tRNA ligase [Rhodopseudomonas palustris CGA009] Length = 438 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/438 (90%), Positives = 418/438 (95%) Query: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 MRLSRFFLPILKENPKEAEIVSHRLMLRAGM+RQEAAGIYAWLPLG RVLKKIEQIVREE Sbjct: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60 Query: 61 QDRAGALELLMPTLQLADLWRESGRYDAYGPEMLRILDRHKRELLYGPTNEEMITEIFRS 120 Q+RAGA+ELLMPTLQLADLWRESGRYDAYGPEMLRI DRHKRELLYGPTNEEMITEIFR+ Sbjct: 61 QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120 Query: 121 YIKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRSYNKMFVA 180 YIKSYK+LPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFD+DEAGAR+SYNKMFVA Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180 Query: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYINRDVLDLPVPGEDVDYD 240 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYI+RDVL+LPVP E+VDYD Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240 Query: 241 GDLTPIIKQWTSVYAATEDVHEAARFEREVPEAKRLNTRGIEVGQIFYFGTKYSDTMKAM 300 GDLTPIIKQWTSVYAATEDVHE AR+E EVPEA RLNTRGIEVGQIFYFGTKYSD+MKA Sbjct: 241 GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKAN 300 Query: 301 VAGPDGVDVPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFRAAILNLKQGDAAV 360 V GPDG D PIHGGSYGVGVSRL+GAIIEACHDD GI WPEAVAPFR ILNLKQGDAA Sbjct: 301 VTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAAT 360 Query: 361 DGACEQLYRELSAKGVDVLYDDTDQRAGAKFAAADLIGIPWQILVGPKGLADGKVEVKRR 420 D AC+QLYRELSAKGVDVLYDDTDQRAGAKFA ADLIGIPWQI VGP+GLA+GKVE+KRR Sbjct: 361 DAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRR 420 Query: 421 SDGSRDNMSPADVVAKLA 438 SDG+R+N++ ADVVA+L Sbjct: 421 SDGARENLALADVVARLT 438 >pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Proams pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Proams pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Proams pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Cysams pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Cysams pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Cysams pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Atp pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Atp pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In Complex With Atp Length = 458 Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/438 (90%), Positives = 418/438 (95%) Query: 1 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEQIVREE 60 MRLSRFFLPILKENPKEAEIVSHRLMLRAGM+RQEAAGIYAWLPLG RVLKKIEQIVREE Sbjct: 21 MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 80 Query: 61 QDRAGALELLMPTLQLADLWRESGRYDAYGPEMLRILDRHKRELLYGPTNEEMITEIFRS 120 Q+RAGA+ELLMPTLQLADLWRESGRYDAYGPEMLRI DRHKRELLYGPTNEEMITEIFR+ Sbjct: 81 QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 140 Query: 121 YIKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRSYNKMFVA 180 YIKSYK+LPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFD+DEAGAR+SYNKMFVA Sbjct: 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 200 Query: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYINRDVLDLPVPGEDVDYD 240 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYI+RDVL+LPVP E+VDYD Sbjct: 201 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 260 Query: 241 GDLTPIIKQWTSVYAATEDVHEAARFEREVPEAKRLNTRGIEVGQIFYFGTKYSDTMKAM 300 GDLTPIIKQWTSVYAATEDVHE AR+E EVPEA RLNTRGIEVGQIFYFGTKYSD+MKA Sbjct: 261 GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKAN 320 Query: 301 VAGPDGVDVPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFRAAILNLKQGDAAV 360 V GPDG D PIHGGSYGVGVSRL+GAIIEACHDD GI WPEAVAPFR ILNLKQGDAA Sbjct: 321 VTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAAT 380 Query: 361 DGACEQLYRELSAKGVDVLYDDTDQRAGAKFAAADLIGIPWQILVGPKGLADGKVEVKRR 420 D AC+QLYRELSAKGVDVLYDDTDQRAGAKFA ADLIGIPWQI VGP+GLA+GKVE+KRR Sbjct: 381 DAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRR 440 Query: 421 SDGSRDNMSPADVVAKLA 438 SDG+R+N++ ADVVA+L Sbjct: 441 SDGARENLALADVVARLT 458