BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0021.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774401.1| hypothetical protein blr7761 [Bradyrhizobium ja...   239   9e-62
ref|YP_001237488.1| hypothetical protein BBta_1346 [Bradyrhizobi...   235   2e-60
ref|YP_001208119.1| hypothetical protein BRADO6263 [Bradyrhizobi...   234   3e-60
ref|YP_001989968.1| Endoribonuclease L-PSP [Rhodopseudomonas pal...   220   7e-56
ref|NP_946220.1| endoribonuclease L-PSP [Rhodopseudomonas palust...   219   8e-56

>ref|NP_774401.1| hypothetical protein blr7761 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53026.1| blr7761 [Bradyrhizobium japonicum USDA 110]
          Length = 129

 Score =  239 bits (610), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 113/128 (88%), Positives = 120/128 (93%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           MSRRLISTGSPFEK AGYSRAV+DGDFAFVAGTTGYDY TMTMP+DVTSQSRNCFKTIEA
Sbjct: 1   MSRRLISTGSPFEKTAGYSRAVVDGDFAFVAGTTGYDYTTMTMPADVTSQSRNCFKTIEA 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           ALKEGGF MADIVR TYYLTD +D DAHFAVCGEVLGDIRPAAT+L+V+ LYKPEMKVEI
Sbjct: 61  ALKEGGFEMADIVRVTYYLTDIKDADAHFAVCGEVLGDIRPAATLLVVSALYKPEMKVEI 120

Query: 121 EVTAKRRN 128
           E TAKRR+
Sbjct: 121 EATAKRRS 128


>ref|YP_001237488.1| hypothetical protein BBta_1346 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33582.1| hypothetical protein BBta_1346 [Bradyrhizobium sp. BTAi1]
          Length = 129

 Score =  235 bits (600), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 119/128 (92%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           MSRRLISTGSPFEK AGYSRAV+DGDFAFVAGTTGYDY+TMTMP+DVTSQSRNCFKTI A
Sbjct: 1   MSRRLISTGSPFEKTAGYSRAVVDGDFAFVAGTTGYDYSTMTMPADVTSQSRNCFKTIAA 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           AL+E GF MADIVRATYYLTD  D DAHFAVCGEVLGDIRPAATM++VA L KPEMKVEI
Sbjct: 61  ALQEAGFEMADIVRATYYLTDVNDADAHFAVCGEVLGDIRPAATMVVVAALLKPEMKVEI 120

Query: 121 EVTAKRRN 128
           E+TAKRR+
Sbjct: 121 EITAKRRS 128


>ref|YP_001208119.1| hypothetical protein BRADO6263 [Bradyrhizobium sp. ORS 278]
 emb|CAL79904.1| Conserved hypothetical protein; putative Endoribonuclease L-PSP
           domain [Bradyrhizobium sp. ORS 278]
          Length = 129

 Score =  234 bits (597), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/127 (87%), Positives = 119/127 (93%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           M+RRLISTGSPFEK AGYSRAV+DGDFAFVAGTTGYDY+TMTMP+DVTSQSRNCFKTI A
Sbjct: 1   MARRLISTGSPFEKTAGYSRAVVDGDFAFVAGTTGYDYSTMTMPADVTSQSRNCFKTIAA 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           AL+EGGF MADIVRATYYLTD  D DAHFAVCGEVLGDIRPAAT+++VA L KPEMKVEI
Sbjct: 61  ALQEGGFEMADIVRATYYLTDVNDADAHFAVCGEVLGDIRPAATLVVVAALLKPEMKVEI 120

Query: 121 EVTAKRR 127
           EVTAKRR
Sbjct: 121 EVTAKRR 127


>ref|YP_001989968.1| Endoribonuclease L-PSP [Rhodopseudomonas palustris TIE-1]
 gb|ACE99492.1| Endoribonuclease L-PSP [Rhodopseudomonas palustris TIE-1]
          Length = 128

 Score =  220 bits (560), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 116/128 (90%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           MSRRLISTGSPFEK AGYSRAV+DGDF FV+GTTGYDY TM++P DVTSQ+RNCFKTI A
Sbjct: 1   MSRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGA 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           ALKE GFAM DIVRATYY+TD +D DA FAVCGE LG+IRPAAT++ VAGLYKPEMK+EI
Sbjct: 61  ALKEAGFAMEDIVRATYYITDPKDADAVFAVCGEHLGEIRPAATIIAVAGLYKPEMKIEI 120

Query: 121 EVTAKRRN 128
           EVTAKRR+
Sbjct: 121 EVTAKRRS 128


>ref|NP_946220.1| endoribonuclease L-PSP [Rhodopseudomonas palustris CGA009]
 emb|CAE26311.1| Endoribonuclease L-PSP [Rhodopseudomonas palustris CGA009]
          Length = 128

 Score =  219 bits (559), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 116/128 (90%)

Query: 1   MSRRLISTGSPFEKIAGYSRAVIDGDFAFVAGTTGYDYATMTMPSDVTSQSRNCFKTIEA 60
           MSRRLISTGSPFEK AGYSRAV+DGDF FV+GTTGYDY TM++P DVTSQ+RNCFKTI A
Sbjct: 1   MSRRLISTGSPFEKTAGYSRAVVDGDFVFVSGTTGYDYTTMSLPEDVTSQTRNCFKTIGA 60

Query: 61  ALKEGGFAMADIVRATYYLTDARDVDAHFAVCGEVLGDIRPAATMLIVAGLYKPEMKVEI 120
           ALKE GFAM DIVRATYY+TD +D DA FAVCGE LG+IRPAAT++ VAGLYKPEMK+EI
Sbjct: 61  ALKEAGFAMEDIVRATYYITDPKDADAVFAVCGEHLGEIRPAATIVAVAGLYKPEMKIEI 120

Query: 121 EVTAKRRN 128
           EVTAKRR+
Sbjct: 121 EVTAKRRS 128