BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0020.p (480 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774402.1| homospermidine synthase [Bradyrhizobium japonic... 989 0.0 ref|ZP_08628553.1| homospermidine synthase(HSS) [Bradyrhizobiace... 962 0.0 ref|ZP_07025371.1| Homospermidine synthase [Afipia sp. 1NLS2] >g... 941 0.0 ref|YP_002287914.1| homospermidine synthase (HSS) [Oligotropha c... 915 0.0 ref|YP_001208120.1| homospermidine synthase [Bradyrhizobium sp. ... 792 0.0 >ref|NP_774402.1| homospermidine synthase [Bradyrhizobium japonicum USDA 110] dbj|BAC53027.1| homospermidine synthase [Bradyrhizobium japonicum USDA 110] Length = 480 Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/480 (97%), Positives = 476/480 (99%) Query: 1 MSPASQIYAKITGPIVMIGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHN 60 MSPASQIYAKITGPIVM+GFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHN Sbjct: 1 MSPASQIYAKITGPIVMVGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHN 60 Query: 61 VKFIQKAVTRDNYRDLLSPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEP 120 V+FIQK VT+DNYR+LL+PLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEP Sbjct: 61 VRFIQKGVTKDNYRELLTPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEP 120 Query: 121 WLGFYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNV 180 WLGFYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNV Sbjct: 121 WLGFYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNV 180 Query: 181 AADLKLNAPKPKTKAEWADLMRQAGVKGIHIAERDTQRSKSPKEPDVFVNTWSVEGFLSE 240 AADLKLNAPKPKTKAEWADLMRQAG+KGIHIAERDTQRSK PKEPDVFVNTWSVEGFLSE Sbjct: 181 AADLKLNAPKPKTKAEWADLMRQAGIKGIHIAERDTQRSKKPKEPDVFVNTWSVEGFLSE 240 Query: 241 GVQPSELGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHN 300 GVQPSELGWGTHEKWMPENA THEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHN Sbjct: 241 GVQPSELGWGTHEKWMPENARTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHN 300 Query: 301 ESISIADYFTVRDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEI 360 ESISIADYFTVRDASG A+YRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEI Sbjct: 301 ESISIADYFTVRDASGKAVYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEI 360 Query: 361 VDGIDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPN 420 VDGIDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPN Sbjct: 361 VDGIDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPN 420 Query: 421 EGIVEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFKNILVR 480 EGIVEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQF+NILVR Sbjct: 421 EGIVEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFRNILVR 480 >ref|ZP_08628553.1| homospermidine synthase(HSS) [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08766.1| homospermidine synthase(HSS) [Bradyrhizobiaceae bacterium SG-6C] Length = 479 Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/474 (94%), Positives = 469/474 (98%) Query: 7 IYAKITGPIVMIGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHNVKFIQK 66 +YA+I+GPIVM+GFGSIGKGTLP+IERHLDYDKSR+TVIDPKDEGRKAHCEKHNV+FIQ+ Sbjct: 6 VYARISGPIVMVGFGSIGKGTLPMIERHLDYDKSRITVIDPKDEGRKAHCEKHNVRFIQQ 65 Query: 67 AVTRDNYRDLLSPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPWLGFYF 126 AVT+DNYR+LL+PLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPWLGFYF Sbjct: 66 AVTKDNYRELLTPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPWLGFYF 125 Query: 127 DSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNVAADLKL 186 D+SKGPEARSNYALRE TLAAK+ARP GSTTAVSCCGANPGMVSFFVKQALLNVA+DLKL Sbjct: 126 DASKGPEARSNYALRENTLAAKRARPPGSTTAVSCCGANPGMVSFFVKQALLNVASDLKL 185 Query: 187 NAPKPKTKAEWADLMRQAGVKGIHIAERDTQRSKSPKEPDVFVNTWSVEGFLSEGVQPSE 246 NAP+PKTKAEWADLMRQAG+KGIHIAERDTQRSK PKEPDVFVNTWSVEGFLSEGVQPSE Sbjct: 186 NAPRPKTKAEWADLMRQAGIKGIHIAERDTQRSKKPKEPDVFVNTWSVEGFLSEGVQPSE 245 Query: 247 LGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNESISIA 306 LGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNESISI+ Sbjct: 246 LGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNESISIS 305 Query: 307 DYFTVRDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIVDGIDE 366 DYFTVRDASG +YRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIVDGIDE Sbjct: 306 DYFTVRDASGKVMYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIVDGIDE 365 Query: 367 LGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNEGIVEA 426 LGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNEGIVEA Sbjct: 366 LGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNEGIVEA 425 Query: 427 DEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFKNILVR 480 DEMDFDRLLEIQ+PYLGPVKG+YTDWTPLTDRPGLFPEDIDTSDPWQFKN+LVR Sbjct: 426 DEMDFDRLLEIQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFKNVLVR 479 >ref|ZP_07025371.1| Homospermidine synthase [Afipia sp. 1NLS2] gb|EFI52513.1| Homospermidine synthase [Afipia sp. 1NLS2] Length = 481 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/479 (91%), Positives = 463/479 (96%) Query: 2 SPASQIYAKITGPIVMIGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHNV 61 S AS ++A+ITGPIVM+GFGSIGKG LPLIERH DYDKSR+TVIDPKDEGRKAHCEKHNV Sbjct: 3 SNASSVHARITGPIVMVGFGSIGKGLLPLIERHFDYDKSRITVIDPKDEGRKAHCEKHNV 62 Query: 62 KFIQKAVTRDNYRDLLSPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPW 121 +FIQ+ +T+DNYRDLL+PLLTEG GQGFCVN+SVDTGS DIMELCNELGALYIDTVNEPW Sbjct: 63 RFIQQGLTKDNYRDLLTPLLTEGNGQGFCVNVSVDTGSADIMELCNELGALYIDTVNEPW 122 Query: 122 LGFYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNVA 181 LGFYFD+SKGPEARSNYALRE TLA KKARPAGSTTAVSCCGANPGMVSFFVKQAL+NVA Sbjct: 123 LGFYFDASKGPEARSNYALRENTLAFKKARPAGSTTAVSCCGANPGMVSFFVKQALMNVA 182 Query: 182 ADLKLNAPKPKTKAEWADLMRQAGVKGIHIAERDTQRSKSPKEPDVFVNTWSVEGFLSEG 241 ADLKLNAPKPK++ EWADLMRQAG+KGIHIAERDTQRSK PKEPDVFVNTWSVEGF+SEG Sbjct: 183 ADLKLNAPKPKSRTEWADLMRQAGIKGIHIAERDTQRSKKPKEPDVFVNTWSVEGFISEG 242 Query: 242 VQPSELGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNE 301 VQPSELGWGTHEKWMPENAHTH+AGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNE Sbjct: 243 VQPSELGWGTHEKWMPENAHTHQAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNE 302 Query: 302 SISIADYFTVRDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIV 361 SISI+DYFTV DASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAA+ QEKHHILDENEIV Sbjct: 303 SISISDYFTVFDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAARAQEKHHILDENEIV 362 Query: 362 DGIDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNE 421 DGIDELGVLL+GHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSA++ GMVWALENPNE Sbjct: 363 DGIDELGVLLYGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSALVAGMVWALENPNE 422 Query: 422 GIVEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFKNILVR 480 GIVE DEMDFDRLLEIQ+PYLGPVKG+YTDWTPL DRPGLFPEDIDTSDPWQF+N+LVR Sbjct: 423 GIVETDEMDFDRLLEIQMPYLGPVKGYYTDWTPLKDRPGLFPEDIDTSDPWQFRNVLVR 481 >ref|YP_002287914.1| homospermidine synthase (HSS) [Oligotropha carboxidovorans OM5] ref|YP_004633967.1| homospermidine synthase Hss [Oligotropha carboxidovorans OM5] gb|ACI92049.1| homospermidine synthase (HSS) [Oligotropha carboxidovorans OM5] gb|AEI04096.1| homospermidine synthase Hss [Oligotropha carboxidovorans OM4] gb|AEI07726.1| homospermidine synthase Hss [Oligotropha carboxidovorans OM5] Length = 481 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/479 (88%), Positives = 455/479 (94%) Query: 2 SPASQIYAKITGPIVMIGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHNV 61 S AS ++A+ITGPIVM+GFGSIGKG LPLIERH DYDKSRVTV+DPKDEGRKAHCE++NV Sbjct: 3 SNASPVHARITGPIVMVGFGSIGKGLLPLIERHFDYDKSRVTVLDPKDEGRKAHCEQNNV 62 Query: 62 KFIQKAVTRDNYRDLLSPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPW 121 +FIQK +T+DNYR+LL PLLTEGGGQGFCVN+SVDTGSTDIME CNE+GALYID VNEPW Sbjct: 63 RFIQKGLTKDNYRELLGPLLTEGGGQGFCVNVSVDTGSTDIMEFCNEIGALYIDAVNEPW 122 Query: 122 LGFYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNVA 181 LGFYFD+SKGPEARSNYALRE TLAAK ARPAGSTTAVSCCGANPGMVSFFVKQAL+N+A Sbjct: 123 LGFYFDASKGPEARSNYALREATLAAKHARPAGSTTAVSCCGANPGMVSFFVKQALMNIA 182 Query: 182 ADLKLNAPKPKTKAEWADLMRQAGVKGIHIAERDTQRSKSPKEPDVFVNTWSVEGFLSEG 241 ADLKLNAPKP T+AEW DLMRQAG+KGIHIAERDTQRS P+EPDVFVNTWSVEGF+SE Sbjct: 183 ADLKLNAPKPATRAEWGDLMRQAGIKGIHIAERDTQRSMKPREPDVFVNTWSVEGFMSEA 242 Query: 242 VQPSELGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNE 301 VQP+ELGWGTHEKWMP NA THEAGCGAAIYLMQPGA+TRVRTWCPTRGAQYGFL+THNE Sbjct: 243 VQPAELGWGTHEKWMPANAFTHEAGCGAAIYLMQPGADTRVRTWCPTRGAQYGFLITHNE 302 Query: 302 SISIADYFTVRDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIV 361 +ISI+DYFTVRDASG AIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIV Sbjct: 303 AISISDYFTVRDASGKAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIV 362 Query: 362 DGIDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNE 421 DGIDELGVLL+GHDNNAYWYGSQLSIEETR+LAPYQNATGLQVTSA++ GMVWALENPNE Sbjct: 363 DGIDELGVLLYGHDNNAYWYGSQLSIEETRQLAPYQNATGLQVTSAMVAGMVWALENPNE 422 Query: 422 GIVEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFKNILVR 480 GIVE DEMDFDRLLEIQ PYLGP+KG+YTDWTPLT RPG FPEDID +DPWQFKN+LVR Sbjct: 423 GIVETDEMDFDRLLEIQKPYLGPMKGYYTDWTPLTGRPGFFPEDIDEADPWQFKNVLVR 481 >ref|YP_001208120.1| homospermidine synthase [Bradyrhizobium sp. ORS 278] emb|CAL79905.1| homospermidine synthase [Bradyrhizobium sp. ORS 278] Length = 474 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/477 (78%), Positives = 413/477 (86%), Gaps = 4/477 (0%) Query: 4 ASQIYAKITGPIVMIGFGSIGKGTLPLIERHLDYDKSRVTVIDPKDEGRKAHCEKHNVKF 63 +SQI+AKITGPIVMIGFGSIGKGTLPLIERH DYDKSR +IDP D+G A +KH V+F Sbjct: 2 SSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELA--KKHGVRF 59 Query: 64 IQKAVTRDNYRDLLSPLLTEGGGQGFCVNLSVDTGSTDIMELCNELGALYIDTVNEPWLG 123 IQ+ VTRDNYRDLL PLLTEGGGQGFCVNLSVDT S DIM LC E+GALYIDTV EPW G Sbjct: 60 IQQGVTRDNYRDLLVPLLTEGGGQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAG 119 Query: 124 FYFDSSKGPEARSNYALREVTLAAKKARPAGSTTAVSCCGANPGMVSFFVKQALLNVAAD 183 FYFD GPE RSNYALRE LAA++ P G TTAVS CGANPGMVS+FVKQALL++A D Sbjct: 120 FYFDKQMGPEKRSNYALRETLLAARRKSPGG-TTAVSTCGANPGMVSWFVKQALLDIARD 178 Query: 184 LKLNAPKPKTKAEWADLMRQAGVKGIHIAERDTQRSKSPKEPDVFVNTWSVEGFLSEGVQ 243 K +PK++ WA LM++ GVKG+HIAERDTQRSK+PK DVFVNTWSVEGF+SEG+Q Sbjct: 179 TKTAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQ 238 Query: 244 PSELGWGTHEKWMPENAHTHEAGCGAAIYLMQPGANTRVRTWCPTRGAQYGFLVTHNESI 303 P+ELGWGTHE WMP+N H GCGAAIYL+QPGANTRVR+WCPT GAQYGFLVTHNESI Sbjct: 239 PAELGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESI 298 Query: 304 SIADYFTVRDASGTAIYRPTCHYAYHPADDAVLSLHEMFGRAAKMQEKHHILDENEIVDG 363 SIADY+TVRD +YRPTCHYAYHPA+DAVLSLHE+FG KMQEK HILDENEIVDG Sbjct: 299 SIADYYTVRDGD-KVVYRPTCHYAYHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDG 357 Query: 364 IDELGVLLFGHDNNAYWYGSQLSIEETRKLAPYQNATGLQVTSAVLGGMVWALENPNEGI 423 IDELGVLL+GH NAYWYGSQLSIEETR++APYQNATG+QV+SAVL GMVWALENPN GI Sbjct: 358 IDELGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSSAVLAGMVWALENPNAGI 417 Query: 424 VEADEMDFDRLLEIQLPYLGPVKGFYTDWTPLTDRPGLFPEDIDTSDPWQFKNILVR 480 VEADEMDF R LEIQ PYLGPVKG+YTDWTPL DRPGLFPEDIDTSDPWQF+NILVR Sbjct: 418 VEADEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR 474